Wall clock time and date at job start Tue Mar 31 2020 17:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.29082 * 2 1 4 4 C 1.54001 * 110.32298 * 237.86156 * 2 1 3 5 5 N 1.47490 * 107.08487 * 242.31441 * 4 2 1 6 6 C 1.34768 * 127.03755 * 154.52276 * 5 4 2 7 7 O 1.21616 * 120.00246 * 180.02562 * 6 5 4 8 8 C 1.47421 * 120.00015 * 0.02562 * 6 5 4 9 9 C 1.36090 * 126.45363 * 180.02562 * 8 6 5 10 10 O 1.34254 * 106.95329 * 179.97438 * 9 8 6 11 11 C 1.34045 * 108.22707 * 0.02562 * 10 9 8 12 12 C 1.50703 * 125.37941 * 180.02562 * 11 10 9 13 13 C 1.53780 * 113.60969 * 37.47945 * 12 11 10 14 14 C 1.53782 * 87.07857 * 220.01481 * 13 12 11 15 15 C 1.53777 * 113.61772 * 299.97922 * 12 11 10 16 16 N 1.29937 * 109.24424 * 0.02562 * 11 10 9 17 17 C 1.48124 * 105.92791 * 334.77941 * 5 4 2 18 18 C 1.54594 * 103.42226 * 39.02624 * 17 5 4 19 19 H 1.09002 * 110.57827 * 81.16565 * 18 17 5 20 20 C 1.53000 * 110.98808 * 204.36922 * 18 17 5 21 21 N 1.46501 * 109.47332 * 288.65081 * 20 18 17 22 22 C 1.36933 * 120.00094 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00022 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99966 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00216 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00083 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46843 * 90.00209 * 26 24 22 28 28 H 1.48496 * 109.47188 * 209.99956 * 26 24 22 29 29 H 1.48496 * 109.47336 * 330.00221 * 26 24 22 30 30 H 1.08999 * 109.47180 * 180.68121 * 1 2 3 31 31 H 1.08997 * 109.47347 * 300.68677 * 1 2 3 32 32 H 1.09006 * 109.46827 * 60.68053 * 1 2 3 33 33 H 1.09001 * 109.91401 * 122.95910 * 4 2 1 34 34 H 1.08998 * 110.07932 * 1.76316 * 4 2 1 35 35 H 1.08003 * 126.51783 * 0.24597 * 9 8 6 36 36 H 1.08998 * 112.84752 * 168.78123 * 12 11 10 37 37 H 1.08996 * 113.61411 * 334.56351 * 13 12 11 38 38 H 1.09004 * 113.61799 * 105.47046 * 13 12 11 39 39 H 1.08998 * 113.61554 * 270.88324 * 14 13 12 40 40 H 1.08997 * 113.61556 * 139.97768 * 14 13 12 41 41 H 1.08995 * 113.61418 * 254.53106 * 15 12 11 42 42 H 1.09007 * 113.61411 * 25.43240 * 15 12 11 43 43 H 1.09004 * 110.65994 * 157.50642 * 17 5 4 44 44 H 1.08995 * 110.66231 * 280.62386 * 17 5 4 45 45 H 1.08998 * 109.47201 * 48.65424 * 20 18 17 46 46 H 1.09003 * 109.47088 * 168.64889 * 20 18 17 47 47 H 0.97003 * 119.99451 * 0.02562 * 21 20 18 48 48 H 0.96992 * 120.00110 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9205 -0.7102 6 6 3.0644 -3.0861 -1.3447 7 8 3.7156 -3.9556 -0.7980 8 6 2.5318 -3.3071 -2.7014 9 6 2.6877 -4.4269 -3.4588 10 8 2.0465 -4.2080 -4.6179 11 6 1.5089 -2.9808 -4.5743 12 6 0.7030 -2.3417 -5.6758 13 6 -0.2191 -3.3258 -6.4148 14 6 0.1734 -2.5975 -7.7112 15 6 1.4746 -2.1942 -6.9977 16 7 1.7924 -2.4293 -3.4325 17 6 3.2815 -1.5369 0.6473 18 6 2.0693 -0.7720 1.2263 19 1 1.3208 -1.4692 1.6032 20 6 2.5071 0.1966 2.3267 21 7 2.9000 -0.5617 3.5170 22 6 3.3317 0.0972 4.6370 23 1 3.3821 1.1760 4.6431 24 6 3.7044 -0.6214 5.7647 25 7 4.1189 0.0120 6.8415 26 14 3.6165 -2.4873 5.7544 27 1 4.9097 -3.0411 5.2787 28 1 3.3440 -2.9775 7.1293 29 1 2.5262 -2.9265 4.8470 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3634 0.5244 0.8837 32 1 -0.3633 0.5033 -0.8961 33 1 2.7167 -0.1223 -1.8111 34 1 1.2353 -1.1173 -1.8377 35 1 3.2216 -5.3230 -3.1788 36 1 0.2025 -1.4271 -5.3579 37 1 0.1235 -4.3598 -6.3740 38 1 -1.2720 -3.2172 -6.1546 39 1 -0.4731 -1.7533 -7.9505 40 1 0.3289 -3.2662 -8.5577 41 1 1.7891 -1.1720 -7.2079 42 1 2.2803 -2.9188 -7.1163 43 1 3.4979 -2.4223 1.2451 44 1 4.1540 -0.8859 0.5925 45 1 3.3539 0.7864 1.9757 46 1 1.6799 0.8613 2.5760 47 1 2.8551 -1.5307 3.5113 48 1 4.3790 -0.4901 7.6295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106850248.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:46 Heat of formation + Delta-G solvation = 25.358318 kcal Electronic energy + Delta-G solvation = -28632.400559 eV Core-core repulsion = 24690.191017 eV Total energy + Delta-G solvation = -3942.209542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.78312 -40.02944 -39.16339 -37.93318 -35.24529 -34.72400 -32.78615 -31.50952 -31.05462 -29.50596 -26.80705 -26.40258 -26.25559 -25.99991 -23.91626 -22.63675 -22.04286 -21.11856 -20.48926 -19.98772 -19.24106 -18.00176 -17.46501 -17.12957 -16.92575 -16.16569 -16.00195 -15.73264 -15.31503 -14.61849 -14.35207 -14.21807 -13.90263 -13.66794 -13.40684 -13.29050 -13.13786 -13.03436 -12.98176 -12.71399 -12.42087 -12.22838 -12.00133 -11.61670 -11.55883 -11.46343 -11.38799 -11.09633 -11.04946 -10.92854 -10.89351 -10.57636 -10.46884 -10.25769 -10.14979 -10.06454 -9.55485 -9.31789 -8.87036 -8.61665 -7.20612 -5.73853 -3.09433 0.82644 1.69928 2.19785 2.83976 3.16690 3.42563 3.45517 3.46513 3.50182 3.92367 4.01237 4.21532 4.23871 4.45277 4.54245 4.63114 4.65692 4.77889 4.92663 5.01528 5.09570 5.13326 5.23846 5.28494 5.32864 5.35764 5.36165 5.45884 5.46378 5.50214 5.57326 5.60922 5.68024 5.74486 5.80967 5.82678 5.90978 6.00705 6.09247 6.14406 6.19251 6.23494 6.46606 6.65613 6.77008 7.16901 7.51149 8.01641 8.04251 8.45086 9.23920 9.96612 10.16043 11.44441 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.002459 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.801265 B =11386.137215 C =12217.977517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.107 3.893 5 N -0.602 5.602 6 C 0.614 3.386 7 O -0.539 6.539 8 C -0.062 4.062 9 C 0.009 3.991 10 O -0.194 6.194 11 C 0.205 3.795 12 C -0.020 4.020 13 C -0.133 4.133 14 C -0.139 4.139 15 C -0.130 4.130 16 N -0.454 5.454 17 C 0.112 3.888 18 C -0.107 4.107 19 H 0.082 0.918 20 C 0.170 3.830 21 N -0.757 5.757 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.031 0.969 46 H 0.032 0.968 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -5.132 -32.954 34.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.016 4.016 5 N -0.334 5.334 6 C 0.401 3.599 7 O -0.417 6.417 8 C -0.181 4.181 9 C -0.065 4.065 10 O -0.080 6.080 11 C -0.004 4.004 12 C -0.039 4.039 13 C -0.171 4.171 14 C -0.177 4.177 15 C -0.169 4.169 16 N -0.184 5.184 17 C -0.009 4.009 18 C -0.127 4.127 19 H 0.101 0.899 20 C 0.042 3.958 21 N -0.402 5.402 22 C -0.373 4.373 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.247 0.753 36 H 0.151 0.849 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.591 -4.884 -32.370 34.112 hybrid contribution 0.321 -1.998 0.156 2.030 sum -9.270 -6.882 -32.213 34.220 Atomic orbital electron populations 1.21809 0.94151 1.01804 1.01888 1.22117 0.96436 0.99805 0.93719 0.89337 1.22408 0.96420 0.86634 0.96143 1.48557 1.52457 1.14433 1.17946 1.16313 0.79816 0.81140 0.82592 1.90850 1.41155 1.43098 1.66592 1.21758 1.05312 0.93106 0.97969 1.25277 0.97315 1.01187 0.82692 1.84332 1.53057 1.34100 1.36541 1.26149 0.97940 0.80673 0.95590 1.21327 0.95361 0.99286 0.87927 1.23029 0.99808 0.98856 0.95427 1.22823 0.97037 1.00754 0.97067 1.23024 0.97587 1.03144 0.93109 1.70873 1.14134 1.30356 1.02993 1.22594 0.97291 0.99997 0.81058 1.22575 0.96953 0.98010 0.95124 0.89937 1.20607 0.97244 0.92562 0.85358 1.42739 1.80918 1.04529 1.12044 1.19039 1.35741 0.93151 0.89398 0.89177 1.24666 1.01214 0.97282 0.95958 1.69700 1.50616 1.34322 1.03578 0.86575 0.78025 0.87336 0.76785 1.20949 1.21730 1.20329 0.92863 0.91909 0.92624 0.91760 0.88527 0.75276 0.84862 0.89220 0.90192 0.89374 0.90576 0.90109 0.89442 0.89653 0.90115 0.95153 0.94969 0.80641 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.90 37.16 0.33 -1.18 16 2 C -0.10 -1.24 3.17 -89.25 -0.28 -1.52 16 3 H 0.09 1.01 7.85 -51.93 -0.41 0.60 16 4 C 0.11 1.32 5.93 -2.98 -0.02 1.30 16 5 N -0.60 -9.08 3.29 -171.24 -0.56 -9.64 16 6 C 0.61 9.74 7.89 -12.53 -0.10 9.64 16 7 O -0.54 -10.05 17.10 5.26 0.09 -9.96 16 8 C -0.06 -0.80 6.84 -83.02 -0.57 -1.36 16 9 C 0.01 0.09 11.95 29.96 0.36 0.45 16 10 O -0.19 -1.82 10.39 6.53 0.07 -1.75 16 11 C 0.21 1.90 7.33 -13.08 -0.10 1.80 16 12 C -0.02 -0.11 4.29 -90.96 -0.39 -0.51 16 13 C -0.13 -0.59 7.62 -25.92 -0.20 -0.79 16 14 C -0.14 -0.46 8.08 -25.92 -0.21 -0.67 16 15 C -0.13 -0.59 7.63 -25.92 -0.20 -0.79 16 16 N -0.45 -5.27 8.55 -7.65 -0.07 -5.33 16 17 C 0.11 1.83 6.44 -2.31 -0.01 1.81 16 18 C -0.11 -1.67 2.60 -88.93 -0.23 -1.90 16 19 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16 20 C 0.17 3.22 5.58 -4.04 -0.02 3.19 16 21 N -0.76 -18.17 5.33 -59.91 -0.32 -18.49 16 22 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 26 Si 0.88 22.85 27.73 -169.99 -4.71 18.13 16 27 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.17 5.69 -51.93 -0.30 0.87 16 35 H 0.23 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.45 7.81 -51.93 -0.41 0.04 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.45 8.09 -51.93 -0.42 0.03 16 43 H 0.08 1.56 7.85 -51.93 -0.41 1.15 16 44 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 45 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.36 8.62 5.53 -40.82 -0.23 8.39 16 48 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -35.03 389.80 -8.39 -43.42 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.64 Total: 4.35 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.89 Total: 2.40 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.17 Total: -62.46 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.16 Total: -11.71 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.03 -8.39 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106850248.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.778 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds