Wall clock time and date at job start Tue Mar 31 2020 17:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.29082 * 2 1 4 4 C 1.54001 * 110.32298 * 237.86156 * 2 1 3 5 5 N 1.47490 * 107.08487 * 242.31441 * 4 2 1 6 6 C 1.34768 * 127.03755 * 154.52276 * 5 4 2 7 7 O 1.21616 * 120.00246 * 180.02562 * 6 5 4 8 8 C 1.47421 * 120.00015 * 0.02562 * 6 5 4 9 9 C 1.36090 * 126.45363 * 180.02562 * 8 6 5 10 10 O 1.34254 * 106.95329 * 179.97438 * 9 8 6 11 11 C 1.34045 * 108.22707 * 0.02562 * 10 9 8 12 12 C 1.50703 * 125.37941 * 180.02562 * 11 10 9 13 13 C 1.53780 * 113.60969 * 37.47945 * 12 11 10 14 14 C 1.53782 * 87.07857 * 220.01481 * 13 12 11 15 15 C 1.53777 * 113.61772 * 299.97922 * 12 11 10 16 16 N 1.29937 * 109.24424 * 0.02562 * 11 10 9 17 17 C 1.48124 * 105.92791 * 334.77941 * 5 4 2 18 18 C 1.54594 * 103.42226 * 39.02624 * 17 5 4 19 19 H 1.09002 * 110.57827 * 81.16565 * 18 17 5 20 20 C 1.53000 * 110.98808 * 204.36922 * 18 17 5 21 21 N 1.46501 * 109.47332 * 288.65081 * 20 18 17 22 22 C 1.36933 * 120.00094 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00022 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99966 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00216 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00083 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46843 * 90.00209 * 26 24 22 28 28 H 1.48496 * 109.47188 * 209.99956 * 26 24 22 29 29 H 1.48496 * 109.47336 * 330.00221 * 26 24 22 30 30 H 1.08999 * 109.47180 * 180.68121 * 1 2 3 31 31 H 1.08997 * 109.47347 * 300.68677 * 1 2 3 32 32 H 1.09006 * 109.46827 * 60.68053 * 1 2 3 33 33 H 1.09001 * 109.91401 * 122.95910 * 4 2 1 34 34 H 1.08998 * 110.07932 * 1.76316 * 4 2 1 35 35 H 1.08003 * 126.51783 * 0.24597 * 9 8 6 36 36 H 1.08998 * 112.84752 * 168.78123 * 12 11 10 37 37 H 1.08996 * 113.61411 * 334.56351 * 13 12 11 38 38 H 1.09004 * 113.61799 * 105.47046 * 13 12 11 39 39 H 1.08998 * 113.61554 * 270.88324 * 14 13 12 40 40 H 1.08997 * 113.61556 * 139.97768 * 14 13 12 41 41 H 1.08995 * 113.61418 * 254.53106 * 15 12 11 42 42 H 1.09007 * 113.61411 * 25.43240 * 15 12 11 43 43 H 1.09004 * 110.65994 * 157.50642 * 17 5 4 44 44 H 1.08995 * 110.66231 * 280.62386 * 17 5 4 45 45 H 1.08998 * 109.47201 * 48.65424 * 20 18 17 46 46 H 1.09003 * 109.47088 * 168.64889 * 20 18 17 47 47 H 0.97003 * 119.99451 * 0.02562 * 21 20 18 48 48 H 0.96992 * 120.00110 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9205 -0.7102 6 6 3.0644 -3.0861 -1.3447 7 8 3.7156 -3.9556 -0.7980 8 6 2.5318 -3.3071 -2.7014 9 6 2.6877 -4.4269 -3.4588 10 8 2.0465 -4.2080 -4.6179 11 6 1.5089 -2.9808 -4.5743 12 6 0.7030 -2.3417 -5.6758 13 6 -0.2191 -3.3258 -6.4148 14 6 0.1734 -2.5975 -7.7112 15 6 1.4746 -2.1942 -6.9977 16 7 1.7924 -2.4293 -3.4325 17 6 3.2815 -1.5369 0.6473 18 6 2.0693 -0.7720 1.2263 19 1 1.3208 -1.4692 1.6032 20 6 2.5071 0.1966 2.3267 21 7 2.9000 -0.5617 3.5170 22 6 3.3317 0.0972 4.6370 23 1 3.3821 1.1760 4.6431 24 6 3.7044 -0.6214 5.7647 25 7 4.1189 0.0120 6.8415 26 14 3.6165 -2.4873 5.7544 27 1 4.9097 -3.0411 5.2787 28 1 3.3440 -2.9775 7.1293 29 1 2.5262 -2.9265 4.8470 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3634 0.5244 0.8837 32 1 -0.3633 0.5033 -0.8961 33 1 2.7167 -0.1223 -1.8111 34 1 1.2353 -1.1173 -1.8377 35 1 3.2216 -5.3230 -3.1788 36 1 0.2025 -1.4271 -5.3579 37 1 0.1235 -4.3598 -6.3740 38 1 -1.2720 -3.2172 -6.1546 39 1 -0.4731 -1.7533 -7.9505 40 1 0.3289 -3.2662 -8.5577 41 1 1.7891 -1.1720 -7.2079 42 1 2.2803 -2.9188 -7.1163 43 1 3.4979 -2.4223 1.2451 44 1 4.1540 -0.8859 0.5925 45 1 3.3539 0.7864 1.9757 46 1 1.6799 0.8613 2.5760 47 1 2.8551 -1.5307 3.5113 48 1 4.3790 -0.4901 7.6295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106850248.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:45 Heat of formation + Delta-G solvation = 1.538576 kcal Electronic energy + Delta-G solvation = -28633.433461 eV Core-core repulsion = 24690.191017 eV Total energy + Delta-G solvation = -3943.242443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.56755 -41.21201 -39.55642 -39.16374 -36.66161 -35.98578 -34.18760 -33.30066 -31.87680 -31.00496 -27.89302 -27.29138 -27.05835 -26.57325 -25.27496 -24.12610 -22.73658 -22.53332 -21.27405 -21.19379 -20.01062 -19.60799 -18.73347 -17.93901 -17.85541 -17.26821 -16.71117 -16.60975 -16.52697 -16.08845 -15.79271 -15.53703 -15.13662 -14.83146 -14.74978 -14.47593 -14.08969 -13.83650 -13.74963 -13.62730 -13.52690 -13.38849 -13.32936 -13.03392 -12.84573 -12.56030 -12.42404 -12.16815 -11.97921 -11.92248 -11.84094 -11.78953 -11.60980 -11.47886 -11.41925 -11.40132 -11.23703 -11.00035 -10.16653 -9.76549 -9.31035 -8.04548 -5.37110 -0.03026 0.85463 1.35267 1.37639 1.43630 1.45681 1.75714 2.08307 2.45281 2.69635 3.25963 3.28027 3.53940 3.54829 3.56173 3.65160 3.75389 3.77743 3.93314 3.93980 4.04760 4.23376 4.30388 4.41034 4.45297 4.49192 4.52102 4.68918 4.73916 4.75325 4.80045 4.80583 4.84126 4.86415 4.92853 5.03764 5.06690 5.11019 5.13726 5.16105 5.17352 5.21993 5.32445 5.50738 5.52186 5.74927 6.19732 6.28895 6.43126 6.86634 7.05815 7.82546 7.99832 9.16834 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.002459 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.801265 B =11386.137215 C =12217.977517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.103 0.897 4 C 0.112 3.888 5 N -0.605 5.605 6 C 0.608 3.392 7 O -0.578 6.578 8 C -0.093 4.093 9 C 0.027 3.973 10 O -0.190 6.190 11 C 0.214 3.786 12 C -0.026 4.026 13 C -0.132 4.132 14 C -0.129 4.129 15 C -0.130 4.130 16 N -0.472 5.472 17 C 0.112 3.888 18 C -0.096 4.096 19 H 0.075 0.925 20 C 0.169 3.831 21 N -0.761 5.761 22 C -0.229 4.229 23 H 0.063 0.937 24 C -0.061 4.061 25 N -0.981 5.981 26 Si 0.947 3.053 27 H -0.282 1.282 28 H -0.293 1.293 29 H -0.258 1.258 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.145 0.855 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.363 0.637 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -5.550 -36.214 38.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.121 0.879 4 C -0.010 4.010 5 N -0.335 5.335 6 C 0.398 3.602 7 O -0.460 6.460 8 C -0.212 4.212 9 C -0.047 4.047 10 O -0.076 6.076 11 C 0.005 3.995 12 C -0.045 4.045 13 C -0.170 4.170 14 C -0.167 4.167 15 C -0.168 4.168 16 N -0.201 5.201 17 C -0.011 4.011 18 C -0.116 4.116 19 H 0.093 0.907 20 C 0.043 3.957 21 N -0.406 5.406 22 C -0.360 4.360 23 H 0.081 0.919 24 C -0.253 4.253 25 N -0.632 5.632 26 Si 0.775 3.225 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.183 1.183 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.268 0.732 36 H 0.163 0.837 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.195 0.805 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.312 -5.272 -35.690 37.809 hybrid contribution 0.834 -1.780 1.054 2.231 sum -10.478 -7.052 -34.636 36.867 Atomic orbital electron populations 1.21785 0.92707 1.01715 1.03021 1.22124 0.97555 0.99897 0.91565 0.87908 1.22510 0.96536 0.85765 0.96149 1.48634 1.52460 1.15053 1.17369 1.16733 0.79259 0.80707 0.83534 1.90812 1.43008 1.44289 1.67845 1.21472 1.07543 0.94809 0.97336 1.25686 0.95917 1.00964 0.82176 1.84381 1.52874 1.34306 1.36023 1.26915 0.96844 0.80240 0.95523 1.21695 0.95674 0.99912 0.87249 1.23040 0.99936 0.98248 0.95750 1.22811 0.96215 1.01049 0.96592 1.23037 0.97935 1.03445 0.92390 1.70804 1.14880 1.30639 1.03803 1.22466 0.97709 0.99014 0.81887 1.22395 0.96450 0.97422 0.95304 0.90694 1.20768 0.97376 0.93048 0.84546 1.42800 1.80720 1.04816 1.12293 1.19051 1.34055 0.92224 0.90676 0.91869 1.25419 1.02014 1.02040 0.95823 1.69860 1.52729 1.36156 1.04429 0.85523 0.78480 0.81606 0.76873 1.20874 1.21920 1.18251 0.93533 0.92179 0.90142 0.90724 0.87772 0.73150 0.83716 0.89907 0.89342 0.88030 0.90020 0.89392 0.90198 0.92120 0.90190 0.94760 0.94378 0.80475 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.90 71.98 0.64 -1.93 16 2 C -0.09 -2.05 3.17 -9.90 -0.03 -2.08 16 3 H 0.10 2.05 7.85 -2.39 -0.02 2.03 16 4 C 0.11 2.56 5.93 86.53 0.51 3.08 16 5 N -0.60 -17.88 3.29 -813.94 -2.68 -20.56 16 6 C 0.61 19.27 7.89 86.66 0.68 19.95 16 7 O -0.58 -21.96 17.10 -4.08 -0.07 -22.03 16 8 C -0.09 -2.33 6.84 40.41 0.28 -2.05 16 9 C 0.03 0.52 11.95 67.32 0.80 1.32 16 10 O -0.19 -3.21 10.39 0.45 0.00 -3.20 16 11 C 0.21 3.54 7.33 88.39 0.65 4.19 16 12 C -0.03 -0.24 4.29 -11.01 -0.05 -0.28 16 13 C -0.13 -0.82 7.62 31.12 0.24 -0.58 16 14 C -0.13 -0.47 8.08 31.12 0.25 -0.22 16 15 C -0.13 -0.85 7.63 31.12 0.24 -0.61 16 16 N -0.47 -10.19 8.55 -293.03 -2.50 -12.69 16 17 C 0.11 3.62 6.44 86.61 0.56 4.18 16 18 C -0.10 -2.89 2.60 -9.70 -0.03 -2.92 16 19 H 0.07 2.40 7.86 -2.39 -0.02 2.38 16 20 C 0.17 6.25 5.58 86.38 0.48 6.73 16 21 N -0.76 -36.30 5.33 -343.45 -1.83 -38.13 16 22 C -0.23 -13.27 10.47 84.03 0.88 -12.39 16 23 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 24 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 25 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 26 Si 0.95 47.69 27.73 68.60 1.90 49.59 16 27 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 29 H -0.26 -11.98 6.52 99.48 0.65 -11.33 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.10 2.28 5.69 -2.39 -0.01 2.26 16 35 H 0.25 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.65 7.81 -2.39 -0.02 0.63 16 38 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.08 0.66 8.09 -2.38 -0.02 0.64 16 43 H 0.06 2.26 7.85 -2.38 -0.02 2.24 16 44 H 0.08 2.58 7.94 -2.39 -0.02 2.56 16 45 H 0.03 1.27 8.00 -2.39 -0.02 1.25 16 46 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.36 17.05 5.53 -92.71 -0.51 16.54 16 48 H 0.26 16.04 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -76.95 389.80 2.09 -74.86 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.39 Total: 22.69 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.58 Total: 13.14 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -6.71 Total: -135.04 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.07 Total: -25.24 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.90 Total: 49.59 kcal Total: -76.95 2.09 -74.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106850248.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.394 kcal (2) G-P(sol) polarization free energy of solvation -76.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds