Wall clock time and date at job start Tue Mar 31 2020 17:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47127 * 2 1 4 4 O 1.42900 * 109.46919 * 119.99173 * 2 1 3 5 5 C 1.35676 * 117.00228 * 270.00657 * 4 2 1 6 6 C 1.38922 * 119.68298 * 180.02562 * 5 4 2 7 7 C 1.38380 * 119.11001 * 179.97438 * 6 5 4 8 8 C 1.38829 * 118.48477 * 0.02562 * 7 6 5 9 9 C 1.38043 * 119.28775 * 0.25231 * 8 7 6 10 10 N 1.31968 * 120.83596 * 359.45492 * 9 8 7 11 11 C 1.50694 * 109.47479 * 239.99485 * 2 1 3 12 12 O 1.21284 * 120.00070 * 245.00643 * 11 2 1 13 13 N 1.34777 * 120.00094 * 65.00175 * 11 2 1 14 14 C 1.48115 * 127.03247 * 179.71023 * 13 11 2 15 15 C 1.54595 * 103.42265 * 219.28396 * 14 13 11 16 16 H 1.08998 * 110.57636 * 81.17221 * 15 14 13 17 17 C 1.53003 * 110.99124 * 204.37535 * 15 14 13 18 18 N 1.46500 * 109.47007 * 288.65420 * 17 15 14 19 19 C 1.36937 * 119.99912 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99841 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00150 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99668 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00208 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46972 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46610 * 120.00281 * 23 21 19 26 26 H 1.48491 * 109.47575 * 240.00222 * 23 21 19 27 27 C 1.54624 * 102.91187 * 322.86950 * 15 14 13 28 28 H 1.09004 * 110.32613 * 262.80719 * 27 15 14 29 29 C 1.52993 * 110.41411 * 140.63213 * 27 15 14 30 30 C 1.47478 * 127.03408 * 0.02562 * 13 11 2 31 31 H 1.08998 * 109.47571 * 300.00633 * 1 2 3 32 32 H 1.09009 * 109.47017 * 60.00556 * 1 2 3 33 33 H 1.09008 * 109.47563 * 180.02562 * 1 2 3 34 34 H 1.08002 * 120.44550 * 359.97438 * 6 5 4 35 35 H 1.08002 * 120.75560 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.35145 * 179.97438 * 8 7 6 37 37 H 1.08003 * 119.57882 * 179.72181 * 9 8 7 38 38 H 1.09002 * 110.66648 * 337.76950 * 14 13 11 39 39 H 1.09005 * 110.66221 * 100.88974 * 14 13 11 40 40 H 1.09003 * 109.46665 * 48.65370 * 17 15 14 41 41 H 1.09003 * 109.47300 * 168.64850 * 17 15 14 42 42 H 0.96996 * 119.99699 * 359.97438 * 18 17 15 43 43 H 0.97001 * 119.99642 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.47160 * 302.87646 * 29 27 15 45 45 H 1.09007 * 109.46971 * 62.87717 * 29 27 15 46 46 H 1.09003 * 109.47520 * 182.87450 * 29 27 15 47 47 H 1.09000 * 109.91868 * 273.87931 * 30 13 11 48 48 H 1.09004 * 109.91578 * 34.96532 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 1.1669 5 6 2.2114 0.0832 2.2742 6 6 2.6744 -0.5145 3.4397 7 6 2.8801 0.2685 4.5620 8 6 2.6135 1.6284 4.4784 9 6 2.1497 2.1538 3.2891 10 7 1.9686 1.3824 2.2338 11 6 2.0324 -0.7105 -1.2303 12 8 2.6529 -1.7468 -1.1212 13 7 1.7920 -0.1944 -2.4519 14 6 2.2150 -0.7548 -3.7561 15 6 2.6179 0.4960 -4.5705 16 1 3.6266 0.8151 -4.3085 17 6 2.5092 0.2300 -6.0733 18 7 3.5814 -0.6785 -6.4872 19 6 3.6859 -1.0622 -7.7975 20 1 2.9782 -0.6947 -8.5259 21 6 4.7022 -1.9226 -8.1898 22 7 5.5649 -2.3700 -7.3022 23 14 4.8444 -2.4466 -9.9771 24 1 3.7604 -1.8096 -10.7674 25 1 6.1625 -2.0225 -10.5138 26 1 4.7237 -3.9236 -10.0712 27 6 1.5772 1.5489 -4.1242 28 1 0.7601 1.6024 -4.8437 29 6 2.2380 2.9200 -3.9689 30 6 1.0596 1.0473 -2.7632 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 2.8713 -1.5760 3.4695 35 1 3.2398 -0.1683 5.4819 36 1 2.7630 2.2676 5.3361 37 1 1.9365 3.2104 3.2202 38 1 3.0678 -1.4217 -3.6298 39 1 1.3869 -1.2746 -4.2381 40 1 1.5430 -0.2244 -6.2928 41 1 2.6001 1.1707 -6.6163 42 1 4.2171 -1.0082 -5.8330 43 1 6.2748 -2.9715 -7.5763 44 1 3.0598 2.8486 -3.2564 45 1 2.6218 3.2498 -4.9344 46 1 1.5033 3.6384 -3.6053 47 1 -0.0092 0.8424 -2.8252 48 1 1.2501 1.7940 -1.9923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106886271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:17 Heat of formation + Delta-G solvation = -18.472007 kcal Electronic energy + Delta-G solvation = -28564.583065 eV Core-core repulsion = 24620.472897 eV Total energy + Delta-G solvation = -3944.110167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.07813 -40.12385 -38.53290 -37.38137 -34.70694 -33.18139 -32.80865 -32.11640 -31.37449 -30.34230 -28.96008 -26.62862 -25.73472 -24.80580 -23.88677 -23.36185 -22.57667 -21.16131 -19.94880 -19.55879 -18.76704 -17.46976 -16.95458 -16.72019 -16.20522 -16.13230 -15.89716 -15.20272 -14.87665 -14.73438 -14.38271 -14.20854 -13.78073 -13.67332 -13.50526 -13.33398 -13.24237 -13.03877 -12.86040 -12.65093 -12.31459 -12.30154 -12.13192 -12.02778 -11.78281 -11.36887 -11.27742 -11.10741 -10.85744 -10.56266 -10.46989 -10.35270 -10.29070 -9.98550 -9.95192 -9.68966 -9.64139 -8.87359 -8.81538 -8.62793 -6.91052 -5.73960 -3.03526 0.82305 0.92894 2.30798 2.58976 3.26657 3.45149 3.45609 3.50162 3.52957 3.93058 4.25958 4.51026 4.54811 4.58500 4.65830 4.71193 4.73925 4.81363 4.85299 4.89945 4.92382 5.25418 5.30112 5.37322 5.41176 5.42329 5.50612 5.52986 5.59689 5.61503 5.75722 5.79608 5.81105 5.85252 5.96713 6.04654 6.08715 6.12257 6.18819 6.19948 6.40361 6.46864 6.71485 6.84285 6.94468 7.49622 7.54767 7.71866 8.15030 8.44102 9.55340 10.12574 10.46707 11.48705 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019725 B = 0.002289 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.176347 B =12230.474328 C =12889.694918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.078 3.922 3 H 0.113 0.887 4 O -0.276 6.276 5 C 0.325 3.675 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.616 5.616 14 C 0.116 3.884 15 C -0.102 4.102 16 H 0.084 0.916 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.100 4.100 28 H 0.089 0.911 29 C -0.142 4.142 30 C 0.100 3.900 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 12.780 23.839 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 H 0.130 0.870 4 O -0.181 6.181 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.352 5.352 14 C -0.005 4.005 15 C -0.122 4.122 16 H 0.102 0.898 17 C 0.038 3.962 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.120 4.120 28 H 0.107 0.893 29 C -0.199 4.199 30 C -0.023 4.023 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.821 12.205 22.989 28.586 hybrid contribution 0.598 -0.558 -0.084 0.822 sum -11.223 11.647 22.905 28.040 Atomic orbital electron populations 1.22208 0.92424 1.03789 1.03875 1.22008 0.95754 0.97819 0.82575 0.86974 1.86393 1.79731 1.34388 1.17614 1.19917 0.91001 0.87374 0.87058 1.21126 1.05953 1.02409 0.91392 1.21433 0.94032 0.93436 0.97658 1.21983 1.05359 0.96236 1.00042 1.22422 0.92655 0.99182 0.87305 1.67260 1.22111 1.04750 1.32593 1.19743 0.80225 0.85335 0.82899 1.90771 1.39851 1.23154 1.85570 1.48713 1.55669 1.25327 1.05490 1.22541 1.01028 0.96567 0.80332 1.22526 0.99103 0.93683 0.96877 0.89787 1.20622 0.92548 0.93760 0.89315 1.42387 1.32596 1.54781 1.07993 1.19245 1.10019 1.22294 0.85607 0.91115 1.24764 0.98122 1.00409 0.97716 1.69678 1.18435 1.37293 1.32533 0.86120 0.77310 0.78097 0.84671 1.20573 1.21903 1.21866 1.22093 0.98862 0.95521 0.95481 0.89273 1.21836 1.00291 0.95306 1.02469 1.22357 0.96016 0.86198 0.97697 0.90877 0.90018 0.91200 0.83864 0.84098 0.84549 0.82336 0.89206 0.90502 0.96060 0.95852 0.78202 0.93515 0.92647 0.91778 0.92684 0.91223 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.41 37.16 0.35 -1.28 16 2 C 0.08 1.00 2.27 -27.89 -0.06 0.93 16 3 H 0.11 1.33 6.53 -51.93 -0.34 0.99 16 4 O -0.28 -3.93 9.30 -38.59 -0.36 -4.28 16 5 C 0.33 3.90 7.45 -17.12 -0.13 3.77 16 6 C -0.19 -1.83 10.04 -39.28 -0.39 -2.22 16 7 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 8 C -0.22 -1.38 10.11 -39.43 -0.40 -1.78 16 9 C 0.14 1.08 11.18 -17.56 -0.20 0.88 16 10 N -0.54 -5.80 8.65 -13.33 -0.12 -5.91 16 11 C 0.53 8.54 7.27 -10.99 -0.08 8.46 16 12 O -0.52 -10.74 16.72 -14.31 -0.24 -10.98 16 13 N -0.62 -8.83 3.29 -169.99 -0.56 -9.39 16 14 C 0.12 1.94 6.44 -2.32 -0.01 1.92 16 15 C -0.10 -1.60 2.60 -88.93 -0.23 -1.83 16 16 H 0.08 1.44 7.86 -51.93 -0.41 1.03 16 17 C 0.17 3.19 5.59 -4.04 -0.02 3.16 16 18 N -0.73 -18.49 5.52 -59.90 -0.33 -18.82 16 19 C -0.24 -6.74 9.99 -15.06 -0.15 -6.90 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 C -0.10 -1.14 3.17 -89.25 -0.28 -1.42 16 28 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 29 C -0.14 -1.43 8.90 37.15 0.33 -1.10 16 30 C 0.10 1.05 5.04 -2.99 -0.02 1.03 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.66 5.72 -51.92 -0.30 0.37 16 33 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.09 1.78 7.85 -51.93 -0.41 1.37 16 39 H 0.08 1.27 7.95 -51.93 -0.41 0.85 16 40 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 43 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 48 H 0.07 0.65 6.93 -51.93 -0.36 0.29 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -35.41 393.42 -9.28 -44.69 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.51 Total: 6.69 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.79 Total: 2.45 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.28 Total: -62.12 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.60 Total: -15.27 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.41 -9.28 -44.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106886271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.217 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds