Wall clock time and date at job start Tue Mar 31 2020 17:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 110.65237 * 2 1 4 4 C 1.54942 * 110.89505 * 236.69456 * 2 1 3 5 5 N 1.48113 * 103.25098 * 204.21424 * 4 2 1 6 6 C 1.34781 * 127.02791 * 219.55349 * 5 4 2 7 7 O 1.21288 * 119.99677 * 179.68848 * 6 5 4 8 8 C 1.50699 * 120.00343 * 359.68155 * 6 5 4 9 9 O 1.42894 * 109.46994 * 179.97438 * 8 6 5 10 10 C 1.42907 * 113.99700 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47083 * 180.02562 * 10 9 8 12 12 C 1.38667 * 120.42005 * 269.71888 * 11 10 9 13 13 C 1.38628 * 118.42156 * 179.78012 * 12 11 10 14 14 C 1.38224 * 119.16089 * 0.51771 * 13 12 11 15 15 N 1.31858 * 120.76376 * 359.72102 * 14 13 12 16 16 C 1.31883 * 121.72339 * 0.02562 * 15 14 13 17 17 C 1.47486 * 105.93573 * 39.29221 * 5 4 2 18 18 C 1.54003 * 107.08454 * 334.55302 * 17 5 4 19 19 H 1.08993 * 110.32784 * 120.19822 * 18 17 5 20 20 C 1.53001 * 110.32182 * 242.31216 * 18 17 5 21 21 N 1.46494 * 109.47490 * 293.54027 * 20 18 17 22 22 C 1.36927 * 120.00432 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99996 * 0.02562 * 22 21 20 24 24 C 1.38818 * 120.00484 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99630 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00154 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47132 * 60.00419 * 26 24 22 28 28 H 1.48504 * 109.46876 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47160 * 299.99819 * 26 24 22 30 30 H 1.09006 * 109.46934 * 296.81404 * 1 2 3 31 31 H 1.08998 * 109.47022 * 56.80917 * 1 2 3 32 32 H 1.08993 * 109.46865 * 176.81888 * 1 2 3 33 33 H 1.08997 * 110.66229 * 85.77224 * 4 2 1 34 34 H 1.08998 * 110.65593 * 322.65752 * 4 2 1 35 35 H 1.09001 * 109.47046 * 300.00464 * 8 6 5 36 36 H 1.09008 * 109.46600 * 60.00211 * 8 6 5 37 37 H 1.09000 * 109.46700 * 299.99669 * 10 9 8 38 38 H 1.08992 * 109.47343 * 60.00095 * 10 9 8 39 39 H 1.08004 * 120.78954 * 0.02562 * 12 11 10 40 40 H 1.08002 * 120.41815 * 180.21763 * 13 12 11 41 41 H 1.07997 * 119.62156 * 179.74702 * 14 13 12 42 42 H 1.08003 * 119.61525 * 180.02562 * 16 15 14 43 43 H 1.08999 * 109.91088 * 93.91448 * 17 5 4 44 44 H 1.08998 * 109.91112 * 215.18998 * 17 5 4 45 45 H 1.08998 * 109.47318 * 53.54622 * 20 18 17 46 46 H 1.09010 * 109.46802 * 173.54224 * 20 18 17 47 47 H 0.97000 * 119.99385 * 0.02562 * 21 20 18 48 48 H 0.96995 * 120.00053 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0827 -0.7948 -1.2098 5 7 3.4321 -1.2057 -0.7582 6 6 4.5602 -1.2366 -1.4952 7 8 5.6045 -1.5919 -0.9909 8 6 4.5240 -0.8298 -2.9458 9 8 5.8334 -0.9463 -3.5060 10 6 5.9099 -0.5817 -4.8856 11 6 7.3279 -0.7423 -5.3698 12 6 8.2214 0.3151 -5.2890 13 6 9.5170 0.1202 -5.7422 14 6 9.8695 -1.1094 -6.2658 15 7 8.9918 -2.0912 -6.3317 16 6 7.7525 -1.9432 -5.9055 17 6 3.2903 -1.5680 0.6644 18 6 2.0775 -0.7915 1.2102 19 1 1.3221 -1.4828 1.5836 20 6 2.5154 0.1661 2.3202 21 7 2.9826 -0.6053 3.4747 22 6 3.4267 0.0421 4.5965 23 1 3.4323 1.1216 4.6304 24 6 3.8699 -0.6889 5.6902 25 7 3.8636 -2.0045 5.6487 26 14 4.4751 0.1944 7.2209 27 1 3.3826 1.0363 7.7710 28 1 4.8890 -0.8053 8.2381 29 1 5.6341 1.0540 6.8706 30 1 -0.3633 0.4636 0.9172 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3633 -1.0260 -0.0570 33 1 2.1496 -0.1568 -2.0910 34 1 1.4623 -1.6679 -1.4120 35 1 3.8371 -1.4794 -3.4883 36 1 4.1859 0.2035 -3.0250 37 1 5.2521 -1.2262 -5.4687 38 1 5.6003 0.4565 -5.0048 39 1 7.9164 1.2666 -4.8790 40 1 10.2403 0.9207 -5.6912 41 1 10.8757 -1.2681 -6.6249 42 1 7.0617 -2.7705 -5.9753 43 1 3.1179 -2.6401 0.7590 44 1 4.1895 -1.2842 1.2111 45 1 3.3238 0.7998 1.9555 46 1 1.6713 0.7888 2.6169 47 1 2.9772 -1.5748 3.4443 48 1 4.1735 -2.5154 6.4127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106927191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:25 Heat of formation + Delta-G solvation = -27.373702 kcal Electronic energy + Delta-G solvation = -27691.416907 eV Core-core repulsion = 23746.920734 eV Total energy + Delta-G solvation = -3944.496174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54524 -40.10170 -38.43851 -37.28965 -34.63817 -33.30143 -32.87520 -32.10582 -31.42867 -29.66565 -28.21422 -26.56103 -26.25201 -24.95521 -23.92023 -23.18981 -22.38578 -21.20279 -19.96822 -19.32431 -17.69121 -17.31556 -17.07188 -17.03460 -16.70942 -16.22463 -15.79249 -15.57606 -15.03244 -14.72677 -14.34142 -14.07166 -13.95279 -13.90068 -13.56139 -13.40652 -13.27852 -12.93683 -12.85261 -12.72222 -12.54419 -12.26209 -11.94861 -11.82246 -11.69095 -11.45952 -11.08506 -10.85366 -10.62458 -10.51777 -10.33826 -10.19793 -10.12915 -9.99752 -9.78204 -9.71714 -9.63931 -9.40955 -8.85657 -8.59022 -6.90716 -5.73657 -3.02723 0.66715 0.93483 2.60780 2.65240 3.37790 3.46628 3.50861 3.52029 3.79290 4.11686 4.31684 4.38696 4.47913 4.52283 4.60233 4.61157 4.64292 4.75770 4.78701 4.91092 4.91633 4.95778 5.00583 5.25256 5.27196 5.31788 5.40709 5.44816 5.48943 5.60144 5.68968 5.74306 5.75110 5.87303 5.96606 6.05777 6.13783 6.16951 6.24617 6.32219 6.40573 6.46613 6.69174 6.71983 6.86595 7.57873 7.61984 7.71677 8.23073 8.44858 9.55976 10.12666 10.47152 11.49091 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012429 B = 0.002193 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.332965 B =12766.756644 C =14357.470804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.084 0.916 4 C 0.101 3.899 5 N -0.620 5.620 6 C 0.528 3.472 7 O -0.514 6.514 8 C 0.051 3.949 9 O -0.356 6.356 10 C 0.106 3.894 11 C -0.142 4.142 12 C -0.052 4.052 13 C -0.176 4.176 14 C 0.103 3.897 15 N -0.488 5.488 16 C 0.122 3.878 17 C 0.113 3.887 18 C -0.103 4.103 19 H 0.087 0.913 20 C 0.163 3.837 21 N -0.732 5.732 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.019 0.981 46 H 0.022 0.978 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 4.956 -28.203 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.103 0.897 4 C -0.022 4.022 5 N -0.357 5.357 6 C 0.315 3.685 7 O -0.388 6.388 8 C -0.029 4.029 9 O -0.274 6.274 10 C 0.029 3.971 11 C -0.144 4.144 12 C -0.078 4.078 13 C -0.196 4.196 14 C -0.054 4.054 15 N -0.196 5.196 16 C -0.035 4.035 17 C -0.008 4.008 18 C -0.122 4.122 19 H 0.106 0.894 20 C 0.035 3.965 21 N -0.376 5.376 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.037 0.963 46 H 0.040 0.960 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.430 3.993 -28.115 28.401 hybrid contribution -0.185 1.096 1.177 1.619 sum -0.614 5.089 -26.938 27.422 Atomic orbital electron populations 1.21733 0.93799 1.02046 1.02157 1.22292 0.96052 0.99714 0.93933 0.89731 1.22682 0.83286 0.98633 0.97570 1.48754 1.07687 1.66750 1.12470 1.19729 0.82671 0.78848 0.87279 1.90788 1.29504 1.46058 1.72452 1.22181 0.86396 1.01740 0.92612 1.88120 1.27265 1.88495 1.23540 1.21259 0.92911 1.00094 0.82864 1.20557 0.96484 0.95699 1.01640 1.21555 0.92848 0.98994 0.94435 1.22175 0.97114 0.99433 1.00828 1.22855 0.98975 0.88829 0.94727 1.67747 1.02698 1.32723 1.16442 1.22716 0.92592 0.95539 0.92653 1.22192 1.00373 0.98820 0.79451 1.22393 0.96579 0.98004 0.95225 0.89449 1.20695 0.96138 0.92812 0.86857 1.42347 1.77196 1.05698 1.12402 1.19153 1.34894 0.91183 0.91989 0.91298 1.24746 1.02177 0.95480 0.98508 1.69645 1.53211 1.04133 1.31100 0.86261 0.78640 0.78292 0.82949 1.21304 1.21675 1.21266 0.91707 0.92702 0.92376 0.90628 0.90630 0.90239 0.90253 0.91720 0.91876 0.84578 0.84473 0.82591 0.82621 0.91653 0.89036 0.96324 0.96038 0.78236 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.17 37.16 0.34 -0.89 16 2 C -0.10 -1.09 3.20 -88.74 -0.28 -1.38 16 3 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 4 C 0.10 0.96 6.40 -2.13 -0.01 0.94 16 5 N -0.62 -8.61 3.29 -169.77 -0.56 -9.17 16 6 C 0.53 8.12 7.97 -10.98 -0.09 8.03 16 7 O -0.51 -10.77 16.83 -14.36 -0.24 -11.02 16 8 C 0.05 0.52 5.35 36.01 0.19 0.71 16 9 O -0.36 -4.39 9.86 -55.14 -0.54 -4.94 16 10 C 0.11 0.85 6.09 36.01 0.22 1.07 16 11 C -0.14 -1.32 5.53 -104.48 -0.58 -1.90 16 12 C -0.05 -0.44 9.86 -39.28 -0.39 -0.83 16 13 C -0.18 -1.35 10.11 -39.44 -0.40 -1.75 16 14 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 15 N -0.49 -5.30 10.36 -13.25 -0.14 -5.44 16 16 C 0.12 1.21 10.86 -17.55 -0.19 1.02 16 17 C 0.11 1.89 6.31 -2.98 -0.02 1.87 16 18 C -0.10 -1.55 2.64 -89.24 -0.24 -1.79 16 19 H 0.09 1.32 7.85 -51.93 -0.41 0.91 16 20 C 0.16 3.21 5.35 -4.04 -0.02 3.19 16 21 N -0.73 -18.57 5.33 -59.91 -0.32 -18.88 16 22 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 26 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.08 0.50 7.23 -51.93 -0.38 0.12 16 34 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.60 7.90 -51.92 -0.41 0.19 16 37 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 39 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.91 7.48 -51.93 -0.39 1.53 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.38 10.21 7.51 -40.82 -0.31 9.90 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -37.47 400.50 -9.72 -47.19 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.75 Total: 4.81 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.91 Total: 1.52 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.29 Total: -61.44 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.79 Total: -15.95 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.47 -9.72 -47.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106927191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.819 kcal (2) G-P(sol) polarization free energy of solvation -37.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds