Wall clock time and date at job start Tue Mar 31 2020 17:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.45496 * 2 1 4 4 C 1.53038 * 109.46052 * 119.96692 * 2 1 3 5 5 C 1.53197 * 109.30963 * 58.64831 * 4 2 1 6 6 N 1.46926 * 108.77484 * 54.63204 * 5 4 2 7 7 C 1.34777 * 120.62694 * 126.37299 * 6 5 4 8 8 O 1.21278 * 119.99854 * 180.02562 * 7 6 5 9 9 C 1.50703 * 120.00161 * 359.97438 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.38827 * 120.35543 * 269.72254 * 10 9 7 12 12 C 1.38377 * 118.48333 * 179.80197 * 11 10 9 13 13 C 1.38924 * 119.11248 * 0.44961 * 12 11 10 14 14 O 1.35673 * 119.68716 * 179.76565 * 13 12 11 15 15 N 1.32244 * 120.62863 * 359.79671 * 13 12 11 16 16 C 1.31969 * 121.65096 * 359.96907 * 15 13 12 17 17 C 1.46922 * 118.74006 * 306.64082 * 6 5 4 18 18 C 1.52766 * 109.00423 * 53.31495 * 17 6 5 19 19 H 1.08993 * 109.36206 * 65.49677 * 18 17 6 20 20 C 1.53002 * 109.55910 * 185.55293 * 18 17 6 21 21 N 1.46498 * 109.47018 * 294.96247 * 20 18 17 22 22 C 1.36937 * 119.99996 * 180.02562 * 21 20 18 23 23 H 1.08007 * 120.00123 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00092 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00256 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 120.00126 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47007 * 90.00053 * 26 24 22 28 28 H 1.48497 * 109.47193 * 210.00303 * 26 24 22 29 29 H 1.48502 * 109.47056 * 330.00466 * 26 24 22 30 30 H 1.08993 * 109.47231 * 300.02968 * 1 2 3 31 31 H 1.08996 * 109.46710 * 60.03314 * 1 2 3 32 32 H 1.08999 * 109.46792 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50307 * 298.69805 * 4 2 1 34 34 H 1.08997 * 109.52523 * 178.61048 * 4 2 1 35 35 H 1.09001 * 109.58130 * 294.84241 * 5 4 2 36 36 H 1.09003 * 109.58526 * 174.42457 * 5 4 2 37 37 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 38 38 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 39 39 H 1.07993 * 120.75885 * 0.02562 * 11 10 9 40 40 H 1.08002 * 120.44500 * 180.19684 * 12 11 10 41 41 H 0.96704 * 114.00136 * 270.02795 * 14 13 12 42 42 H 1.08000 * 119.58293 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.58475 * 173.14651 * 17 6 5 44 44 H 1.08996 * 109.58975 * 293.57557 * 17 6 5 45 45 H 1.08999 * 109.47552 * 54.96449 * 20 18 17 46 46 H 1.09002 * 109.46967 * 174.96735 * 20 18 17 47 47 H 0.97001 * 120.00369 * 0.02562 * 21 20 18 48 48 H 0.96993 * 120.00218 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 1.4994 -2.1541 1.2642 6 7 1.8622 -2.8088 -0.0001 7 6 2.5159 -3.9875 -0.0001 8 8 2.8102 -4.5176 -1.0505 9 6 2.8821 -4.6461 1.3050 10 6 3.6011 -5.9415 1.0295 11 6 2.8890 -7.1270 0.9075 12 6 3.5879 -8.2932 0.6503 13 6 4.9712 -8.2403 0.5330 14 8 5.6686 -9.3775 0.2857 15 7 5.6148 -7.0921 0.6607 16 6 4.9755 -5.9630 0.9015 17 6 1.5041 -2.1514 -1.2643 18 6 2.0397 -0.7207 -1.2501 19 1 3.1294 -0.7430 -1.2384 20 6 1.5567 0.0195 -2.4990 21 7 2.1419 -0.5998 -3.6906 22 6 1.8512 -0.1032 -4.9332 23 1 1.1902 0.7449 -5.0348 24 6 2.4062 -0.6896 -6.0624 25 7 3.2115 -1.7234 -5.9388 26 14 2.0091 -0.0126 -7.7575 27 1 3.0004 1.0329 -8.1176 28 1 2.0642 -1.1114 -8.7548 29 1 0.6471 0.5791 -7.7476 30 1 -0.3633 0.5143 0.8896 31 1 -0.3632 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6959 -0.1935 2.1399 34 1 3.1296 -0.7430 1.2388 35 1 0.4145 -2.1345 1.3675 36 1 1.9380 -2.7018 2.0984 37 1 1.9764 -4.8473 1.8771 38 1 3.5330 -3.9839 1.8760 39 1 1.8137 -7.1381 1.0074 40 1 3.0655 -9.2327 0.5463 41 1 5.9494 -9.8479 1.0826 42 1 5.5345 -5.0441 0.9993 43 1 1.9459 -2.6972 -2.0979 44 1 0.4196 -2.1315 -1.3715 45 1 0.4697 -0.0367 -2.5570 46 1 1.8642 1.0638 -2.4441 47 1 2.7354 -1.3617 -3.5996 48 1 3.5990 -2.1334 -6.7278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132996486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:14 Heat of formation + Delta-G solvation = -61.660471 kcal Electronic energy + Delta-G solvation = -28880.748552 eV Core-core repulsion = 24934.765593 eV Total energy + Delta-G solvation = -3945.982960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77328 -41.13033 -39.33171 -38.05864 -36.62706 -34.91849 -34.19474 -33.47419 -32.71817 -31.47045 -29.05866 -28.46655 -26.84912 -25.61966 -24.88050 -24.74341 -23.40011 -22.54057 -20.83667 -19.82626 -19.37551 -18.89404 -18.15963 -17.97066 -17.30071 -16.86654 -16.76995 -16.28915 -16.05008 -15.95904 -15.65843 -15.32017 -15.20451 -14.95655 -14.53937 -14.40117 -14.19448 -14.12879 -13.84330 -13.71200 -13.34911 -13.05046 -12.97172 -12.87716 -12.65658 -12.63189 -12.57767 -12.40421 -12.14818 -11.95863 -11.91727 -11.68437 -11.32508 -11.18702 -10.97929 -10.94102 -10.71616 -10.44651 -9.75712 -9.52326 -9.02413 -7.96418 -5.27038 -0.04064 0.25623 1.42902 1.46183 1.54727 1.67448 2.04006 2.53567 2.59893 2.77921 3.36512 3.56336 3.64579 3.73654 3.82642 3.86838 3.89941 3.95423 4.02962 4.15190 4.23890 4.34279 4.35187 4.44805 4.52885 4.57999 4.60334 4.69294 4.75514 4.79307 4.82013 4.88023 4.95683 4.97085 5.05633 5.12502 5.21387 5.24052 5.28212 5.34367 5.44611 5.47467 5.57801 5.59727 5.65095 6.23875 6.51473 6.62792 6.92981 7.25987 7.29253 8.06697 8.28221 9.26962 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.003146 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.443020 B = 8898.175990 C =11245.351562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.075 0.925 4 C -0.124 4.124 5 C 0.096 3.904 6 N -0.606 5.606 7 C 0.501 3.499 8 O -0.593 6.593 9 C -0.081 4.081 10 C -0.132 4.132 11 C -0.050 4.050 12 C -0.186 4.186 13 C 0.287 3.713 14 O -0.496 6.496 15 N -0.538 5.538 16 C 0.119 3.881 17 C 0.130 3.870 18 C -0.089 4.089 19 H 0.047 0.953 20 C 0.158 3.842 21 N -0.749 5.749 22 C -0.245 4.245 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.977 3.023 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.265 1.265 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.419 0.581 42 H 0.166 0.834 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.029 0.971 46 H 0.021 0.979 47 H 0.369 0.631 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 -6.099 28.962 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.094 0.906 4 C -0.162 4.162 5 C -0.024 4.024 6 N -0.339 5.339 7 C 0.291 3.709 8 O -0.473 6.473 9 C -0.120 4.120 10 C -0.134 4.134 11 C -0.075 4.075 12 C -0.207 4.207 13 C 0.109 3.891 14 O -0.306 6.306 15 N -0.258 5.258 16 C -0.037 4.037 17 C 0.007 3.993 18 C -0.109 4.109 19 H 0.066 0.934 20 C 0.032 3.968 21 N -0.391 5.391 22 C -0.377 4.377 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.805 3.195 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.189 1.189 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.183 0.817 40 H 0.181 0.819 41 H 0.279 0.721 42 H 0.184 0.816 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.039 0.961 47 H 0.201 0.799 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.631 -6.179 27.659 28.717 hybrid contribution -0.120 -0.270 -1.478 1.507 sum -4.752 -6.449 26.181 27.379 Atomic orbital electron populations 1.21954 0.94087 1.02170 1.02370 1.21076 0.96858 0.99230 0.92811 0.90629 1.21961 1.00930 0.95276 0.98063 1.22241 1.02048 0.93705 0.84430 1.48260 1.56893 1.20711 1.07994 1.21417 0.76728 0.80811 0.91984 1.90800 1.55419 1.64891 1.36204 1.20689 1.04130 0.93183 0.94040 1.20567 0.94639 0.96235 1.01955 1.21766 1.01756 0.90851 0.93165 1.22327 0.93617 1.01668 1.03066 1.19506 0.88544 0.85866 0.95229 1.84759 1.75146 1.33440 1.37259 1.67107 1.43783 1.00033 1.14833 1.22647 0.92233 0.95032 0.93789 1.21199 0.99318 0.92595 0.86193 1.21456 0.99224 0.94474 0.95754 0.93432 1.20888 0.95906 0.94797 0.85222 1.42703 1.56886 1.37449 1.02098 1.19672 1.22332 1.10634 0.85033 0.90269 1.25678 1.00584 0.98970 1.02032 1.69877 1.37278 1.26083 1.29132 0.85090 0.78269 0.76807 0.79301 1.21213 1.22442 1.18925 0.90008 0.93825 0.92385 0.86986 0.92010 0.89160 0.85957 0.83493 0.84255 0.81675 0.81883 0.72078 0.81644 0.93916 0.91230 0.95285 0.96062 0.79916 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.11 71.98 0.58 -2.10 16 2 C -0.08 -1.67 2.71 -10.77 -0.03 -1.69 16 3 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 4 C -0.12 -1.63 5.63 30.67 0.17 -1.45 16 5 C 0.10 1.16 5.88 86.36 0.51 1.67 16 6 N -0.61 -14.62 2.98 -819.72 -2.44 -17.06 16 7 C 0.50 13.59 7.69 87.66 0.67 14.27 16 8 O -0.59 -24.58 15.45 -3.02 -0.05 -24.62 16 9 C -0.08 -1.15 4.20 29.10 0.12 -1.03 16 10 C -0.13 -2.69 4.39 -19.77 -0.09 -2.78 16 11 C -0.05 -0.93 9.85 22.44 0.22 -0.71 16 12 C -0.19 -3.75 10.04 22.47 0.23 -3.53 16 13 C 0.29 7.24 7.74 84.80 0.66 7.89 16 14 O -0.50 -10.85 13.56 -89.90 -1.22 -12.07 16 15 N -0.54 -15.53 10.39 -308.95 -3.21 -18.73 16 16 C 0.12 2.96 10.85 84.63 0.92 3.87 16 17 C 0.13 4.39 5.03 86.22 0.43 4.82 16 18 C -0.09 -2.88 2.14 -10.86 -0.02 -2.90 16 19 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 20 C 0.16 6.46 5.19 86.38 0.45 6.91 16 21 N -0.75 -40.69 5.38 -343.45 -1.85 -42.54 16 22 C -0.24 -14.40 9.99 84.03 0.84 -13.56 16 23 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 24 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 25 N -0.97 -64.40 13.06 21.65 0.28 -64.12 16 26 Si 0.98 48.50 29.55 68.60 2.03 50.53 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 29 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.04 0.96 6.57 -2.39 -0.02 0.95 16 32 H 0.06 1.04 4.99 -2.39 -0.01 1.03 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.85 6.69 -2.39 -0.02 0.83 16 36 H 0.12 0.52 5.93 -2.39 -0.01 0.50 16 37 H 0.15 0.86 7.89 -2.39 -0.02 0.85 16 38 H 0.14 1.09 7.64 -2.39 -0.02 1.07 16 39 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.42 4.13 9.06 -74.05 -0.67 3.46 16 42 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 43 H 0.04 1.96 6.20 -2.39 -0.01 1.95 16 44 H 0.07 2.25 6.70 -2.39 -0.02 2.24 16 45 H 0.03 1.16 6.73 -2.39 -0.02 1.15 16 46 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.37 22.14 6.89 -92.71 -0.64 21.50 16 48 H 0.25 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -91.91 381.08 -0.63 -92.54 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.31 Total: 30.85 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 6.13 Total: 5.21 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -7.21 Total: -142.45 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.27 Total: -36.69 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -91.91 -0.63 -92.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132996486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.879 kcal (2) G-P(sol) polarization free energy of solvation -91.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds