Wall clock time and date at job start Tue Mar 31 2020 17:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.44779 * 2 1 4 4 C 1.53035 * 109.46377 * 240.03433 * 2 1 3 5 5 C 1.52765 * 109.38268 * 301.21681 * 4 2 1 6 6 N 1.46927 * 109.00862 * 305.59133 * 5 4 2 7 7 C 1.34777 * 120.62638 * 233.58544 * 6 5 4 8 8 O 1.21278 * 119.99854 * 179.72148 * 7 6 5 9 9 C 1.50703 * 120.00161 * 359.71455 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.38821 * 120.35833 * 269.72471 * 10 9 7 12 12 C 1.38380 * 118.48889 * 179.73535 * 11 10 9 13 13 C 1.38916 * 119.10483 * 0.53639 * 12 11 10 14 14 O 1.35683 * 119.68323 * 179.74716 * 13 12 11 15 15 N 1.32248 * 120.63744 * 359.72634 * 13 12 11 16 16 C 1.31969 * 121.64321 * 359.97438 * 15 13 12 17 17 C 1.46920 * 118.74032 * 53.30307 * 6 5 4 18 18 C 1.53043 * 109.45990 * 119.96391 * 2 1 3 19 19 H 1.09005 * 109.49595 * 178.61155 * 18 2 1 20 20 C 1.53005 * 109.52302 * 298.68734 * 18 2 1 21 21 N 1.46500 * 109.46870 * 184.85177 * 20 18 2 22 22 C 1.36933 * 119.99738 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00522 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00060 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00053 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00271 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47005 * 89.99674 * 26 24 22 28 28 H 1.48495 * 109.47309 * 209.99710 * 26 24 22 29 29 H 1.48499 * 109.46989 * 329.99776 * 26 24 22 30 30 H 1.09001 * 109.47538 * 300.03284 * 1 2 3 31 31 H 1.08998 * 109.47002 * 60.04051 * 1 2 3 32 32 H 1.09011 * 109.46842 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.50138 * 61.29190 * 4 2 1 34 34 H 1.08994 * 109.50319 * 181.36090 * 4 2 1 35 35 H 1.09000 * 109.51263 * 185.70078 * 5 4 2 36 36 H 1.09004 * 109.42976 * 65.42215 * 5 4 2 37 37 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 38 38 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 39 39 H 1.08006 * 120.75784 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.44793 * 180.28540 * 12 11 10 41 41 H 0.96700 * 113.99819 * 269.98346 * 14 13 12 42 42 H 1.07998 * 119.57797 * 180.02562 * 16 15 13 43 43 H 1.09006 * 109.58607 * 66.43726 * 17 6 5 44 44 H 1.08997 * 109.58881 * 186.71090 * 17 6 5 45 45 H 1.08995 * 109.47137 * 304.85806 * 20 18 2 46 46 H 1.09004 * 109.46908 * 64.85792 * 20 18 2 47 47 H 0.97001 * 120.00260 * 0.02562 * 21 20 18 48 48 H 0.97005 * 120.00421 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2500 5 6 1.5046 -2.1514 -1.2642 6 7 1.8626 -2.8088 0.0001 7 6 2.5166 -3.9873 0.0001 8 8 2.8109 -4.5174 1.0505 9 6 2.8820 -4.6463 -1.3050 10 6 3.6004 -5.9421 -1.0295 11 6 4.9830 -5.9655 -0.9070 12 6 5.6024 -7.1756 -0.6485 13 6 4.8253 -8.3212 -0.5323 14 8 5.4209 -9.5148 -0.2840 15 7 3.5105 -8.2596 -0.6608 16 6 2.8911 -7.1195 -0.9016 17 6 1.4996 -2.1541 1.2643 18 6 2.0398 -0.7207 1.2501 19 1 3.1296 -0.7427 1.2384 20 6 1.5575 0.0193 2.4994 21 7 2.1405 -0.6026 3.6909 22 6 1.8492 -0.1072 4.9338 23 1 1.1893 0.7417 5.0358 24 6 2.4020 -0.6961 6.0627 25 7 3.2058 -1.7309 5.9386 26 14 2.0051 -0.0199 7.7583 27 1 0.8015 -0.7044 8.2949 28 1 3.1554 -0.2563 8.6671 29 1 1.7430 1.4384 7.6606 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5132 -0.8903 32 1 -0.3633 -1.0278 0.0005 33 1 1.6958 -0.1935 -2.1398 34 1 3.1296 -0.7423 -1.2386 35 1 1.9465 -2.6972 -2.0978 36 1 0.4201 -2.1318 -1.3715 37 1 3.5323 -3.9843 -1.8767 38 1 1.9759 -4.8480 -1.8763 39 1 5.5618 -5.0591 -1.0072 40 1 6.6759 -7.2294 -0.5425 41 1 5.6719 -10.0023 -1.0805 42 1 1.8157 -7.1075 -1.0001 43 1 0.4146 -2.1347 1.3674 44 1 1.9361 -2.7031 2.0987 45 1 1.8672 1.0629 2.4458 46 1 0.4703 -0.0347 2.5566 47 1 2.7329 -1.3652 3.5994 48 1 3.5918 -2.1427 6.7275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132996488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:19 Heat of formation + Delta-G solvation = -61.679138 kcal Electronic energy + Delta-G solvation = -28879.584219 eV Core-core repulsion = 24933.600450 eV Total energy + Delta-G solvation = -3945.983769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77256 -41.12808 -39.32707 -38.05879 -36.62958 -34.91608 -34.19341 -33.47523 -32.72264 -31.47200 -29.06203 -28.47364 -26.84208 -25.61914 -24.87645 -24.74361 -23.40100 -22.54122 -20.83258 -19.82799 -19.37532 -18.89330 -18.16431 -17.97046 -17.28201 -16.86774 -16.77363 -16.27381 -16.04588 -15.98576 -15.66485 -15.32257 -15.18042 -14.96136 -14.57070 -14.39623 -14.19458 -14.13122 -13.84104 -13.70945 -13.32636 -13.06962 -12.97795 -12.86196 -12.67629 -12.63664 -12.56756 -12.42404 -12.11880 -11.96422 -11.91466 -11.68426 -11.32429 -11.19021 -10.98207 -10.93865 -10.71712 -10.45427 -9.75635 -9.52309 -9.02193 -7.96431 -5.26832 -0.04289 0.24850 1.43038 1.46247 1.54662 1.67623 2.03873 2.53619 2.59667 2.77622 3.36557 3.56373 3.64602 3.73342 3.82778 3.86644 3.89748 3.95092 4.02720 4.15495 4.23614 4.32621 4.35634 4.45545 4.52667 4.58378 4.61898 4.67284 4.75954 4.79444 4.82010 4.88051 4.95820 4.97207 5.05600 5.12392 5.21571 5.23939 5.28405 5.34247 5.44606 5.47424 5.57449 5.59630 5.64928 6.24006 6.51503 6.62557 6.92163 7.26000 7.29468 8.06916 8.28440 9.26941 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.003141 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.947735 B = 8913.409420 C =11258.976947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.076 0.924 4 C -0.124 4.124 5 C 0.096 3.904 6 N -0.606 5.606 7 C 0.501 3.499 8 O -0.593 6.593 9 C -0.081 4.081 10 C -0.132 4.132 11 C -0.053 4.053 12 C -0.188 4.188 13 C 0.288 3.712 14 O -0.496 6.496 15 N -0.536 5.536 16 C 0.122 3.878 17 C 0.130 3.870 18 C -0.088 4.088 19 H 0.049 0.951 20 C 0.158 3.842 21 N -0.748 5.748 22 C -0.245 4.245 23 H 0.079 0.921 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.287 1.287 28 H -0.296 1.296 29 H -0.264 1.264 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.419 0.581 42 H 0.173 0.827 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.022 0.978 46 H 0.028 0.972 47 H 0.370 0.630 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -3.607 -28.978 29.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.095 0.905 4 C -0.162 4.162 5 C -0.025 4.025 6 N -0.339 5.339 7 C 0.291 3.709 8 O -0.473 6.473 9 C -0.120 4.120 10 C -0.134 4.134 11 C -0.078 4.078 12 C -0.209 4.209 13 C 0.110 3.890 14 O -0.306 6.306 15 N -0.255 5.255 16 C -0.034 4.034 17 C 0.006 3.994 18 C -0.108 4.108 19 H 0.068 0.932 20 C 0.031 3.969 21 N -0.391 5.391 22 C -0.377 4.377 23 H 0.097 0.903 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.805 3.195 27 H -0.214 1.214 28 H -0.223 1.223 29 H -0.189 1.189 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.177 0.823 40 H 0.178 0.822 41 H 0.279 0.721 42 H 0.190 0.810 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.201 0.799 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.453 -4.414 -27.676 28.064 hybrid contribution 0.865 0.285 1.485 1.742 sum -0.588 -4.130 -26.191 26.521 Atomic orbital electron populations 1.21959 0.94196 1.02122 1.02359 1.21076 0.96781 0.99273 0.92840 0.90546 1.21884 1.01015 0.95202 0.98069 1.22149 1.02091 0.93775 0.84441 1.48259 1.56859 1.20746 1.07991 1.21416 0.76765 0.80773 0.91984 1.90800 1.55477 1.64833 1.36205 1.20689 1.04202 0.93111 0.94041 1.20569 0.94738 0.96131 1.01971 1.21753 0.94284 0.98493 0.93306 1.22312 1.02765 0.92610 1.03180 1.19466 0.87417 0.86937 0.95188 1.84760 1.77532 1.31022 1.37254 1.67129 1.11790 1.31724 1.14831 1.22693 1.00786 0.86360 0.93568 1.21290 0.99234 0.92652 0.86192 1.21525 0.99251 0.94324 0.95684 0.93247 1.20891 0.95893 0.94808 0.85269 1.42694 1.57005 1.37352 1.02053 1.19667 1.22352 1.10619 0.85037 0.90312 1.25666 1.00578 0.98993 1.01990 1.69873 1.37333 1.26000 1.29114 0.85096 0.76638 0.78309 0.79467 1.21419 1.22299 1.18907 0.93836 0.90019 0.92477 0.86966 0.91890 0.85941 0.89328 0.84006 0.83736 0.82261 0.82202 0.72060 0.81015 0.91353 0.93888 0.96018 0.95392 0.79885 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.11 71.98 0.58 -2.12 16 2 C -0.08 -1.64 2.71 -10.77 -0.03 -1.67 16 3 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 4 C -0.12 -1.57 5.61 30.53 0.17 -1.40 16 5 C 0.10 1.16 5.85 86.22 0.50 1.66 16 6 N -0.61 -14.62 2.98 -819.74 -2.44 -17.07 16 7 C 0.50 13.59 7.69 87.66 0.67 14.27 16 8 O -0.59 -24.57 15.45 -3.02 -0.05 -24.62 16 9 C -0.08 -1.15 4.20 29.10 0.12 -1.03 16 10 C -0.13 -2.70 4.39 -19.77 -0.09 -2.78 16 11 C -0.05 -1.06 9.85 22.44 0.22 -0.84 16 12 C -0.19 -3.98 10.04 22.47 0.23 -3.76 16 13 C 0.29 7.25 7.74 84.79 0.66 7.91 16 14 O -0.50 -10.80 13.56 -90.01 -1.22 -12.02 16 15 N -0.54 -14.89 10.39 -308.94 -3.21 -18.10 16 16 C 0.12 2.87 10.85 84.63 0.92 3.79 16 17 C 0.13 4.37 5.05 86.36 0.44 4.81 16 18 C -0.09 -2.81 2.15 -10.72 -0.02 -2.83 16 19 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 20 C 0.16 6.41 5.19 86.38 0.45 6.86 16 21 N -0.75 -40.46 5.38 -343.44 -1.85 -42.31 16 22 C -0.24 -14.36 9.99 84.03 0.84 -13.52 16 23 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 24 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 25 N -0.97 -64.01 13.06 21.65 0.28 -63.73 16 26 Si 0.98 48.37 29.55 68.60 2.03 50.39 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 28 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 29 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 30 H 0.04 0.96 6.58 -2.39 -0.02 0.95 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.04 4.99 -2.38 -0.01 1.03 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.12 0.51 5.93 -2.39 -0.01 0.50 16 36 H 0.09 0.86 6.70 -2.38 -0.02 0.85 16 37 H 0.14 1.00 7.63 -2.39 -0.02 0.98 16 38 H 0.14 0.96 7.90 -2.39 -0.02 0.94 16 39 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.42 4.09 9.06 -74.06 -0.67 3.42 16 42 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 43 H 0.07 2.23 6.69 -2.38 -0.02 2.22 16 44 H 0.04 1.98 6.21 -2.39 -0.01 1.96 16 45 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.03 1.12 6.73 -2.38 -0.02 1.10 16 47 H 0.37 22.00 6.90 -92.71 -0.64 21.36 16 48 H 0.25 15.94 8.31 -92.70 -0.77 15.17 16 Total: -1.00 -91.09 381.10 -0.64 -91.72 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.31 Total: 30.81 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 6.13 Total: 4.92 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -7.21 Total: -141.21 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.27 Total: -36.64 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.39 kcal Total: -91.09 -0.64 -91.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132996488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.045 kcal (2) G-P(sol) polarization free energy of solvation -91.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds