Wall clock time and date at job start Tue Mar 31 2020 17:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46050 * 2 1 4 4 C 1.53050 * 109.44987 * 119.96212 * 2 1 3 5 5 C 1.52754 * 109.38540 * 181.25087 * 4 2 1 6 6 N 1.46929 * 109.01321 * 305.59343 * 5 4 2 7 7 C 1.34769 * 120.62927 * 233.58663 * 6 5 4 8 8 O 1.21605 * 120.00218 * 183.97824 * 7 6 5 9 9 C 1.47407 * 119.99945 * 3.97613 * 7 6 5 10 10 C 1.37359 * 128.56525 * 312.52524 * 9 7 6 11 11 O 1.33492 * 106.33882 * 179.76048 * 10 9 7 12 12 N 1.20659 * 113.15788 * 0.24208 * 11 10 9 13 13 C 1.30006 * 112.30264 * 0.02562 * 12 11 10 14 14 C 1.50706 * 127.33661 * 180.02562 * 13 12 11 15 15 C 1.53001 * 117.49653 * 8.59752 * 14 13 12 16 16 C 1.52999 * 117.49815 * 299.97440 * 14 13 12 17 17 C 1.46928 * 118.73565 * 53.30567 * 6 5 4 18 18 C 1.53041 * 109.46366 * 240.02160 * 2 1 3 19 19 H 1.08995 * 109.49745 * 298.58588 * 18 2 1 20 20 C 1.53009 * 109.51840 * 58.66258 * 18 2 1 21 21 N 1.46507 * 109.46691 * 184.85614 * 20 18 2 22 22 C 1.36938 * 119.99495 * 180.02562 * 21 20 18 23 23 H 1.07994 * 119.99904 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99547 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99773 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00082 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47104 * 90.00442 * 26 24 22 28 28 H 1.48500 * 109.47365 * 210.00267 * 26 24 22 29 29 H 1.48502 * 109.47422 * 330.00452 * 26 24 22 30 30 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47082 * 299.97674 * 1 2 3 32 32 H 1.08997 * 109.46855 * 59.97322 * 1 2 3 33 33 H 1.09000 * 109.49734 * 301.33519 * 4 2 1 34 34 H 1.08998 * 109.49572 * 61.42624 * 4 2 1 35 35 H 1.09001 * 109.51042 * 185.70401 * 5 4 2 36 36 H 1.09010 * 109.42863 * 65.42625 * 5 4 2 37 37 H 1.07998 * 126.82797 * 0.02562 * 10 9 7 38 38 H 1.09002 * 115.55103 * 154.30759 * 14 13 12 39 39 H 1.09000 * 117.49971 * 0.02562 * 15 14 13 40 40 H 1.08997 * 117.49817 * 145.01955 * 15 14 13 41 41 H 1.08992 * 117.50014 * 214.97978 * 16 14 13 42 42 H 1.09003 * 117.49662 * 0.02562 * 16 14 13 43 43 H 1.08996 * 109.58869 * 66.43893 * 17 6 5 44 44 H 1.08998 * 109.58110 * 186.86201 * 17 6 5 45 45 H 1.08997 * 109.47198 * 304.85269 * 20 18 2 46 46 H 1.08997 * 109.46918 * 64.85531 * 20 18 2 47 47 H 0.96996 * 119.99923 * 359.97438 * 21 20 18 48 48 H 0.97005 * 119.99910 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2503 5 6 3.5668 -0.6927 1.2646 6 7 4.0677 -1.2493 0.0004 7 6 4.9609 -2.2585 0.0007 8 8 5.4226 -2.6622 -1.0494 9 6 5.3784 -2.8730 1.2739 10 6 5.7751 -2.2538 2.4340 11 8 6.0475 -3.2278 3.3053 12 7 5.8813 -4.3325 2.8494 13 6 5.4760 -4.3007 1.6145 14 6 5.1653 -5.4761 0.7240 15 6 5.1421 -6.8637 1.3682 16 6 6.2957 -6.4685 0.4440 17 6 3.5714 -0.6890 -1.2639 18 6 2.0399 -0.7210 -1.2499 19 1 1.6976 -1.7557 -1.2381 20 6 1.5031 -0.0197 -2.4994 21 7 1.8954 -0.7769 -3.6907 22 6 1.5256 -0.3372 -4.9338 23 1 0.9451 0.5678 -5.0359 24 6 1.8968 -1.0548 -6.0625 25 7 1.5418 -0.6320 -7.2573 26 14 2.9013 -2.6197 -5.8859 27 1 1.9871 -3.7823 -5.7519 28 1 3.7557 -2.7978 -7.0873 29 1 3.7597 -2.5233 -4.6779 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5142 -0.8897 33 1 1.6569 -0.2206 2.1399 34 1 1.6973 -1.7555 1.2386 35 1 3.9341 -1.2911 2.0984 36 1 3.9096 0.3365 1.3719 37 1 5.8476 -1.1904 2.6081 38 1 4.4553 -5.2822 -0.0800 39 1 5.3512 -6.9264 2.4361 40 1 4.4166 -7.5829 0.9882 41 1 6.3291 -6.9276 -0.5439 42 1 7.2639 -6.2714 0.9042 43 1 3.9146 0.3403 -1.3671 44 1 3.9417 -1.2852 -2.0979 45 1 0.4159 0.0359 -2.4460 46 1 1.9161 0.9873 -2.5565 47 1 2.4176 -1.5890 -3.5990 48 1 1.8015 -1.1333 -8.0462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133108453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:04 Heat of formation + Delta-G solvation = 66.762055 kcal Electronic energy + Delta-G solvation = -29556.726402 eV Core-core repulsion = 25616.312260 eV Total energy + Delta-G solvation = -3940.414141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.23558 -40.36930 -38.19255 -37.66138 -35.29272 -33.96991 -33.42417 -32.31740 -31.85348 -30.26925 -28.48845 -26.34303 -24.95011 -24.69769 -23.11928 -22.92735 -22.62328 -21.19372 -20.63906 -20.42063 -19.55926 -18.12554 -17.88945 -17.50848 -16.94963 -16.24811 -15.85398 -15.33617 -14.94914 -14.93452 -14.49103 -14.23012 -14.09060 -14.01126 -13.47847 -13.37767 -13.12889 -12.79189 -12.58771 -12.38361 -12.09297 -12.00003 -11.90910 -11.87013 -11.74269 -11.58171 -11.31215 -11.07316 -10.92394 -10.73055 -10.70827 -10.41250 -10.25515 -10.21154 -10.04334 -9.81706 -9.77759 -9.54695 -8.89265 -8.72149 -7.20716 -5.74676 -3.10302 0.86949 1.47047 2.41347 2.70789 2.96942 3.42945 3.49895 3.51730 3.54325 3.62792 3.95727 4.34495 4.49835 4.58440 4.61513 4.63428 4.68940 4.69851 4.72439 4.74941 4.96067 5.08883 5.14384 5.19578 5.35066 5.40669 5.46153 5.50209 5.55371 5.57331 5.62024 5.65971 5.71175 5.78963 5.80513 5.81083 5.82882 5.96015 6.05444 6.20424 6.28590 6.31551 6.40901 6.68036 6.73314 7.21267 7.88072 7.98981 8.00764 8.44248 9.23239 9.96088 10.15023 11.43570 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003867 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.372361 B = 7239.163123 C = 9016.278438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.074 0.926 4 C -0.129 4.129 5 C 0.097 3.903 6 N -0.601 5.601 7 C 0.590 3.410 8 O -0.516 6.516 9 C -0.232 4.232 10 C -0.019 4.019 11 O 0.099 5.901 12 N -0.356 5.356 13 C 0.097 3.903 14 C -0.090 4.090 15 C -0.163 4.163 16 C -0.154 4.154 17 C 0.120 3.880 18 C -0.107 4.107 19 H 0.074 0.926 20 C 0.163 3.837 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.934 5.934 26 Si 0.878 3.122 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.272 1.272 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.228 0.772 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.037 0.963 46 H 0.028 0.972 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 -3.279 26.091 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.026 4.026 6 N -0.335 5.335 7 C 0.376 3.624 8 O -0.391 6.391 9 C -0.240 4.240 10 C -0.101 4.101 11 O 0.038 5.962 12 N -0.061 5.061 13 C -0.064 4.064 14 C -0.109 4.109 15 C -0.201 4.201 16 C -0.192 4.192 17 C -0.002 4.002 18 C -0.126 4.126 19 H 0.092 0.908 20 C 0.035 3.965 21 N -0.403 5.403 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.198 1.198 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.244 0.756 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.367 -4.300 26.213 27.316 hybrid contribution 0.451 -0.444 -0.693 0.939 sum 6.818 -4.744 25.520 26.838 Atomic orbital electron populations 1.21887 0.94686 1.02048 1.01987 1.21084 0.96218 0.99428 0.93527 0.90743 1.21907 0.94309 1.01762 0.98728 1.21911 0.95412 0.99265 0.86020 1.48041 1.42399 1.34822 1.08201 1.16941 0.79409 0.79353 0.86726 1.90878 1.54389 1.61891 1.31991 1.22270 1.11616 0.93302 0.96783 1.26373 0.98891 0.96812 0.88032 1.84572 1.64158 1.09836 1.37642 1.73585 1.19056 1.01452 1.12035 1.23785 0.98853 0.93002 0.90776 1.20263 1.04485 0.86082 1.00054 1.23054 1.01671 0.95597 0.99730 1.23021 0.93730 1.00852 1.01569 1.21814 0.93852 0.99485 0.85009 1.21792 0.94224 1.00925 0.95685 0.90778 1.20708 0.97454 0.94102 0.84189 1.42774 1.65955 1.28967 1.02584 1.19032 1.28531 1.08057 0.81855 0.89205 1.24643 1.00498 0.98630 0.95104 1.69702 1.50853 1.40630 0.97028 0.86633 0.80617 0.84619 0.77299 1.21143 1.21666 1.19815 0.92773 0.93046 0.91405 0.90520 0.91488 0.89947 0.90748 0.75627 0.85202 0.88019 0.87743 0.87494 0.88527 0.90804 0.88251 0.94552 0.95448 0.80578 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.81 37.16 0.33 -1.23 16 2 C -0.08 -0.89 2.23 -90.57 -0.20 -1.09 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.09 5.34 -26.83 -0.14 -1.24 16 5 C 0.10 0.79 5.92 -3.93 -0.02 0.77 16 6 N -0.60 -7.46 2.98 -174.31 -0.52 -7.98 16 7 C 0.59 8.51 7.66 -12.53 -0.10 8.41 16 8 O -0.52 -9.79 16.54 5.27 0.09 -9.70 16 9 C -0.23 -2.70 5.54 -102.89 -0.57 -3.27 16 10 C -0.02 -0.15 10.02 30.41 0.30 0.15 16 11 O 0.10 0.93 11.06 18.65 0.21 1.14 16 12 N -0.36 -4.11 11.71 34.78 0.41 -3.70 16 13 C 0.10 1.19 7.08 -79.77 -0.56 0.63 16 14 C -0.09 -1.05 6.32 -91.77 -0.58 -1.63 16 15 C -0.16 -1.53 10.16 -26.73 -0.27 -1.80 16 16 C -0.15 -1.56 10.23 -26.73 -0.27 -1.83 16 17 C 0.12 1.79 5.51 -3.71 -0.02 1.77 16 18 C -0.11 -1.54 1.92 -90.50 -0.17 -1.72 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 20 C 0.16 3.00 5.41 -4.03 -0.02 2.97 16 21 N -0.76 -17.98 5.18 -59.90 -0.31 -18.29 16 22 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 23 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 24 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 25 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 26 Si 0.88 22.95 27.74 -169.99 -4.71 18.24 16 27 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 29 H -0.27 -6.91 6.52 56.52 0.37 -6.54 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.80 6.30 -51.93 -0.33 0.47 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.54 4.47 -51.93 -0.23 0.30 16 36 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.23 0.75 7.54 -52.49 -0.40 0.35 16 38 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.10 0.96 7.97 -51.93 -0.41 0.55 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.10 1.87 6.23 -51.93 -0.32 1.55 16 45 H 0.04 0.67 6.15 -51.93 -0.32 0.35 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.36 8.63 4.75 -40.82 -0.19 8.44 16 48 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -35.37 383.66 -8.14 -43.51 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.29 Total: 6.10 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.56 Total: -6.13 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.35 Total: -58.93 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.29 Total: -8.56 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.71 Total: 18.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.37 -8.14 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133108453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.268 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds