Wall clock time and date at job start Tue Mar 31 2020 17:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46050 * 2 1 4 4 C 1.53050 * 109.44987 * 119.96212 * 2 1 3 5 5 C 1.52754 * 109.38540 * 181.25087 * 4 2 1 6 6 N 1.46929 * 109.01321 * 305.59343 * 5 4 2 7 7 C 1.34769 * 120.62927 * 233.58663 * 6 5 4 8 8 O 1.21605 * 120.00218 * 183.97824 * 7 6 5 9 9 C 1.47407 * 119.99945 * 3.97613 * 7 6 5 10 10 C 1.37359 * 128.56525 * 312.52524 * 9 7 6 11 11 O 1.33492 * 106.33882 * 179.76048 * 10 9 7 12 12 N 1.20659 * 113.15788 * 0.24208 * 11 10 9 13 13 C 1.30006 * 112.30264 * 0.02562 * 12 11 10 14 14 C 1.50706 * 127.33661 * 180.02562 * 13 12 11 15 15 C 1.53001 * 117.49653 * 8.59752 * 14 13 12 16 16 C 1.52999 * 117.49815 * 299.97440 * 14 13 12 17 17 C 1.46928 * 118.73565 * 53.30567 * 6 5 4 18 18 C 1.53041 * 109.46366 * 240.02160 * 2 1 3 19 19 H 1.08995 * 109.49745 * 298.58588 * 18 2 1 20 20 C 1.53009 * 109.51840 * 58.66258 * 18 2 1 21 21 N 1.46507 * 109.46691 * 184.85614 * 20 18 2 22 22 C 1.36938 * 119.99495 * 180.02562 * 21 20 18 23 23 H 1.07994 * 119.99904 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99547 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99773 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00082 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47104 * 90.00442 * 26 24 22 28 28 H 1.48500 * 109.47365 * 210.00267 * 26 24 22 29 29 H 1.48502 * 109.47422 * 330.00452 * 26 24 22 30 30 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47082 * 299.97674 * 1 2 3 32 32 H 1.08997 * 109.46855 * 59.97322 * 1 2 3 33 33 H 1.09000 * 109.49734 * 301.33519 * 4 2 1 34 34 H 1.08998 * 109.49572 * 61.42624 * 4 2 1 35 35 H 1.09001 * 109.51042 * 185.70401 * 5 4 2 36 36 H 1.09010 * 109.42863 * 65.42625 * 5 4 2 37 37 H 1.07998 * 126.82797 * 0.02562 * 10 9 7 38 38 H 1.09002 * 115.55103 * 154.30759 * 14 13 12 39 39 H 1.09000 * 117.49971 * 0.02562 * 15 14 13 40 40 H 1.08997 * 117.49817 * 145.01955 * 15 14 13 41 41 H 1.08992 * 117.50014 * 214.97978 * 16 14 13 42 42 H 1.09003 * 117.49662 * 0.02562 * 16 14 13 43 43 H 1.08996 * 109.58869 * 66.43893 * 17 6 5 44 44 H 1.08998 * 109.58110 * 186.86201 * 17 6 5 45 45 H 1.08997 * 109.47198 * 304.85269 * 20 18 2 46 46 H 1.08997 * 109.46918 * 64.85531 * 20 18 2 47 47 H 0.96996 * 119.99923 * 359.97438 * 21 20 18 48 48 H 0.97005 * 119.99910 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2503 5 6 3.5668 -0.6927 1.2646 6 7 4.0677 -1.2493 0.0004 7 6 4.9609 -2.2585 0.0007 8 8 5.4226 -2.6622 -1.0494 9 6 5.3784 -2.8730 1.2739 10 6 5.7751 -2.2538 2.4340 11 8 6.0475 -3.2278 3.3053 12 7 5.8813 -4.3325 2.8494 13 6 5.4760 -4.3007 1.6145 14 6 5.1653 -5.4761 0.7240 15 6 5.1421 -6.8637 1.3682 16 6 6.2957 -6.4685 0.4440 17 6 3.5714 -0.6890 -1.2639 18 6 2.0399 -0.7210 -1.2499 19 1 1.6976 -1.7557 -1.2381 20 6 1.5031 -0.0197 -2.4994 21 7 1.8954 -0.7769 -3.6907 22 6 1.5256 -0.3372 -4.9338 23 1 0.9451 0.5678 -5.0359 24 6 1.8968 -1.0548 -6.0625 25 7 1.5418 -0.6320 -7.2573 26 14 2.9013 -2.6197 -5.8859 27 1 1.9871 -3.7823 -5.7519 28 1 3.7557 -2.7978 -7.0873 29 1 3.7597 -2.5233 -4.6779 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5142 -0.8897 33 1 1.6569 -0.2206 2.1399 34 1 1.6973 -1.7555 1.2386 35 1 3.9341 -1.2911 2.0984 36 1 3.9096 0.3365 1.3719 37 1 5.8476 -1.1904 2.6081 38 1 4.4553 -5.2822 -0.0800 39 1 5.3512 -6.9264 2.4361 40 1 4.4166 -7.5829 0.9882 41 1 6.3291 -6.9276 -0.5439 42 1 7.2639 -6.2714 0.9042 43 1 3.9146 0.3403 -1.3671 44 1 3.9417 -1.2852 -2.0979 45 1 0.4159 0.0359 -2.4460 46 1 1.9161 0.9873 -2.5565 47 1 2.4176 -1.5890 -3.5990 48 1 1.8015 -1.1333 -8.0462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133108453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:03 Heat of formation + Delta-G solvation = 43.677154 kcal Electronic energy + Delta-G solvation = -29557.727438 eV Core-core repulsion = 25616.312260 eV Total energy + Delta-G solvation = -3941.415177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.04565 -41.40102 -39.28253 -38.50679 -36.82266 -35.28670 -34.25957 -33.71626 -33.05351 -31.77565 -29.42790 -27.78996 -25.99447 -25.51074 -24.64034 -23.89217 -23.41177 -22.59371 -21.55435 -21.37141 -20.54143 -19.65686 -18.91924 -18.64621 -17.91126 -17.30940 -16.74861 -16.66598 -16.32185 -15.96224 -15.79626 -15.44104 -15.30320 -15.02175 -14.73681 -14.51731 -14.34980 -14.12866 -14.03852 -13.42357 -13.27546 -13.18923 -12.90556 -12.79133 -12.68865 -12.65917 -12.60691 -12.40390 -12.27660 -12.03838 -11.90532 -11.82135 -11.55026 -11.41507 -11.27343 -11.22622 -11.00302 -10.64605 -10.60068 -9.76103 -9.30662 -8.07526 -5.38827 0.14424 0.61107 1.30884 1.34682 1.40685 1.44979 1.82891 2.19690 2.41800 2.73697 2.82474 3.17098 3.24908 3.46121 3.56448 3.73886 3.75947 3.79641 3.86574 3.92457 3.97150 3.99579 4.04539 4.23131 4.34332 4.51969 4.54699 4.56304 4.59449 4.60381 4.71802 4.76574 4.79287 4.83201 4.92596 4.94438 4.96192 5.05785 5.07337 5.11683 5.19767 5.23842 5.40115 5.49004 5.56613 5.73332 6.17731 6.24680 6.94940 7.03906 7.14549 7.81681 7.97681 9.14172 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003867 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.372361 B = 7239.163123 C = 9016.278438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 H 0.090 0.910 4 C -0.123 4.123 5 C 0.090 3.910 6 N -0.595 5.595 7 C 0.588 3.412 8 O -0.577 6.577 9 C -0.267 4.267 10 C 0.025 3.975 11 O 0.109 5.891 12 N -0.368 5.368 13 C 0.081 3.919 14 C -0.114 4.114 15 C -0.144 4.144 16 C -0.155 4.155 17 C 0.124 3.876 18 C -0.094 4.094 19 H 0.056 0.944 20 C 0.159 3.841 21 N -0.762 5.762 22 C -0.229 4.229 23 H 0.065 0.935 24 C -0.054 4.054 25 N -0.980 5.980 26 Si 0.941 3.059 27 H -0.279 1.279 28 H -0.293 1.293 29 H -0.267 1.267 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.279 0.721 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.039 0.961 46 H 0.032 0.968 47 H 0.360 0.640 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 -2.573 30.415 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.031 4.031 6 N -0.326 5.326 7 C 0.376 3.624 8 O -0.457 6.457 9 C -0.274 4.274 10 C -0.056 4.056 11 O 0.048 5.952 12 N -0.073 5.073 13 C -0.080 4.080 14 C -0.133 4.133 15 C -0.181 4.181 16 C -0.193 4.193 17 C 0.001 3.999 18 C -0.113 4.113 19 H 0.074 0.926 20 C 0.033 3.967 21 N -0.408 5.408 22 C -0.360 4.360 23 H 0.083 0.917 24 C -0.246 4.246 25 N -0.631 5.631 26 Si 0.769 3.231 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.192 1.192 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.295 0.705 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.193 0.807 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.831 -3.582 30.632 31.588 hybrid contribution 0.236 -0.533 -1.959 2.044 sum 7.066 -4.115 28.673 29.816 Atomic orbital electron populations 1.21871 0.94509 1.01650 1.02453 1.21089 0.96296 0.99946 0.92319 0.89123 1.21901 0.94421 1.01067 0.98702 1.22330 0.95232 1.01223 0.84299 1.48081 1.41506 1.34154 1.08856 1.17316 0.78994 0.79102 0.86946 1.90838 1.56798 1.63734 1.34364 1.22021 1.14909 0.93468 0.97009 1.27178 0.94649 0.98103 0.85712 1.84559 1.63405 1.09721 1.37557 1.73587 1.19576 1.02487 1.11640 1.23912 0.99435 0.93507 0.91196 1.20261 1.05183 0.87380 1.00513 1.23096 1.01138 0.94204 0.99629 1.23070 0.93637 1.00422 1.02182 1.21548 0.93947 0.99154 0.85247 1.21648 0.93877 0.99956 0.95852 0.92593 1.20934 0.97706 0.94099 0.84003 1.42879 1.65777 1.29404 1.02708 1.19081 1.26528 1.06595 0.83754 0.91659 1.25308 1.02491 1.01925 0.94921 1.69845 1.53056 1.42351 0.97807 0.85624 0.79200 0.81148 0.77087 1.20495 1.21919 1.19229 0.93636 0.90258 0.93247 0.86798 0.92861 0.87709 0.87446 0.70545 0.87161 0.87795 0.86251 0.86994 0.88680 0.89759 0.92791 0.94294 0.94981 0.80680 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.81 71.98 0.63 -2.07 16 2 C -0.08 -1.41 2.23 -10.76 -0.02 -1.43 16 3 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.12 -1.55 5.34 30.53 0.16 -1.38 16 5 C 0.09 1.05 5.92 86.22 0.51 1.56 16 6 N -0.59 -13.70 2.98 -823.64 -2.45 -16.16 16 7 C 0.59 16.73 7.66 86.66 0.66 17.39 16 8 O -0.58 -22.88 16.54 -4.05 -0.07 -22.94 16 9 C -0.27 -5.74 5.54 -18.74 -0.10 -5.84 16 10 C 0.03 0.29 10.02 67.61 0.68 0.96 16 11 O 0.11 1.67 11.06 77.00 0.85 2.52 16 12 N -0.37 -7.78 11.71 -44.78 -0.52 -8.30 16 13 C 0.08 1.91 7.08 45.16 0.32 2.23 16 14 C -0.11 -2.73 6.32 -11.54 -0.07 -2.80 16 15 C -0.14 -2.60 10.16 30.60 0.31 -2.29 16 16 C -0.16 -3.17 10.23 30.60 0.31 -2.86 16 17 C 0.12 3.65 5.51 86.36 0.48 4.12 16 18 C -0.09 -2.64 1.92 -10.71 -0.02 -2.66 16 19 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 20 C 0.16 5.83 5.41 86.38 0.47 6.30 16 21 N -0.76 -36.91 5.18 -343.43 -1.78 -38.69 16 22 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 23 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 24 C -0.05 -3.33 5.50 84.86 0.47 -2.87 16 25 N -0.98 -64.22 13.97 21.65 0.30 -63.92 16 26 Si 0.94 49.05 27.74 68.60 1.90 50.95 16 27 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 29 H -0.27 -13.52 6.52 99.48 0.65 -12.88 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.08 6.30 -2.39 -0.02 1.07 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.78 4.47 -2.39 -0.01 0.77 16 36 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.28 -0.05 7.54 -2.91 -0.02 -0.08 16 38 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.10 1.84 7.97 -2.39 -0.02 1.82 16 40 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.05 2.11 6.23 -2.39 -0.01 2.10 16 45 H 0.04 1.44 6.15 -2.39 -0.01 1.43 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.36 17.60 4.75 -92.71 -0.44 17.16 16 48 H 0.26 16.16 8.31 -92.70 -0.77 15.38 16 Total: -1.00 -82.80 383.66 4.37 -78.43 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.48 Total: 22.23 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.66 Total: -4.13 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -4.45 Total: -127.06 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.78 Total: -20.42 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.90 Total: 50.95 kcal Total: -82.80 4.37 -78.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133108453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.105 kcal (2) G-P(sol) polarization free energy of solvation -82.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds