Wall clock time and date at job start Tue Mar 31 2020 17:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.44749 * 2 1 4 4 C 1.53042 * 109.45740 * 240.03299 * 2 1 3 5 5 C 1.53199 * 109.31028 * 178.61124 * 4 2 1 6 6 N 1.46922 * 108.77355 * 54.63437 * 5 4 2 7 7 C 1.34777 * 120.62854 * 126.36932 * 6 5 4 8 8 O 1.21612 * 120.00178 * 175.70514 * 7 6 5 9 9 C 1.47397 * 120.00070 * 355.70257 * 7 6 5 10 10 C 1.37363 * 128.56396 * 47.91356 * 9 7 6 11 11 O 1.33495 * 106.33975 * 179.91067 * 10 9 7 12 12 N 1.20661 * 113.15545 * 0.39524 * 11 10 9 13 13 C 1.30012 * 112.30436 * 359.75066 * 12 11 10 14 14 C 1.50703 * 127.33443 * 180.02562 * 13 12 11 15 15 C 1.52999 * 117.49704 * 8.62277 * 14 13 12 16 16 C 1.52996 * 117.49754 * 299.99833 * 14 13 12 17 17 C 1.46925 * 118.74091 * 306.39131 * 6 5 4 18 18 C 1.53035 * 109.46266 * 119.96519 * 2 1 3 19 19 H 1.09004 * 109.49951 * 61.43183 * 18 2 1 20 20 C 1.53008 * 109.52423 * 301.35486 * 18 2 1 21 21 N 1.46497 * 109.47264 * 175.08107 * 20 18 2 22 22 C 1.36932 * 120.00160 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99999 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99977 * 180.02562 * 22 21 20 25 25 N 1.31610 * 120.00199 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99648 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46988 * 60.00261 * 26 24 22 28 28 H 1.48494 * 109.46622 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47146 * 299.99968 * 26 24 22 30 30 H 1.09004 * 109.47288 * 300.02988 * 1 2 3 31 31 H 1.08994 * 109.47546 * 60.03487 * 1 2 3 32 32 H 1.09007 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.49671 * 58.66444 * 4 2 1 34 34 H 1.08993 * 109.52694 * 298.57793 * 4 2 1 35 35 H 1.09002 * 109.58561 * 294.84821 * 5 4 2 36 36 H 1.09002 * 109.70062 * 174.49071 * 5 4 2 37 37 H 1.07993 * 126.82625 * 0.02562 * 10 9 7 38 38 H 1.09002 * 115.54835 * 154.33133 * 14 13 12 39 39 H 1.08999 * 117.50349 * 359.97438 * 15 14 13 40 40 H 1.09000 * 117.49542 * 145.02480 * 15 14 13 41 41 H 1.09000 * 117.49900 * 214.97869 * 16 14 13 42 42 H 1.09000 * 117.50232 * 0.02562 * 16 14 13 43 43 H 1.08999 * 109.58767 * 293.81787 * 17 6 5 44 44 H 1.09007 * 109.70532 * 173.46453 * 17 6 5 45 45 H 1.08995 * 109.46864 * 295.07994 * 20 18 2 46 46 H 1.08996 * 109.47048 * 55.08194 * 20 18 2 47 47 H 0.97005 * 120.00250 * 0.02562 * 21 20 18 48 48 H 0.97001 * 120.00548 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0679 -1.2487 -0.0001 7 6 4.9615 -2.2577 -0.0001 8 8 5.4238 -2.6604 1.0501 9 6 5.3783 -2.8730 -1.2730 10 6 5.7818 -2.2547 -2.4313 11 8 6.0573 -3.2294 -3.3009 12 7 5.8754 -4.3335 -2.8495 13 6 5.4585 -4.3007 -1.6184 14 6 5.1283 -5.4751 -0.7337 15 6 5.4831 -6.8707 -1.2507 16 6 4.0211 -6.4221 -1.2008 17 6 3.5714 -0.6884 1.2642 18 6 2.0399 -0.7207 1.2500 19 1 1.6978 -1.7556 1.2383 20 6 1.5028 -0.0195 2.4994 21 7 1.8938 -0.7771 3.6908 22 6 1.5235 -0.3377 4.9337 23 1 0.9429 0.5672 5.0357 24 6 1.8944 -1.0553 6.0626 25 7 2.6016 -2.1583 5.9383 26 14 1.3887 -0.4561 7.7581 27 1 -0.0928 -0.3978 7.8409 28 1 1.9050 -1.3927 8.7883 29 1 1.9514 0.8980 7.9928 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5132 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6571 -0.2207 -2.1399 34 1 1.6978 -1.7556 -1.2389 35 1 3.9142 0.3410 -1.3675 36 1 3.9437 -1.2830 -2.0986 37 1 5.8622 -1.1916 -2.6034 38 1 5.2192 -5.2968 0.3377 39 1 5.9549 -6.9395 -2.2309 40 1 5.8076 -7.6109 -0.5193 41 1 3.3839 -6.8672 -0.4366 42 1 3.5318 -6.1960 -2.1482 43 1 3.9143 0.3410 1.3673 44 1 3.9417 -1.2823 2.0999 45 1 1.9164 0.9872 2.5571 46 1 0.4156 0.0369 2.4453 47 1 2.4156 -1.5897 3.5992 48 1 2.8611 -2.6596 6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133108454.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:07 Heat of formation + Delta-G solvation = 62.925667 kcal Electronic energy + Delta-G solvation = -29457.187814 eV Core-core repulsion = 25516.607315 eV Total energy + Delta-G solvation = -3940.580499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.13620 -40.21790 -38.05547 -37.55557 -35.09541 -33.83724 -33.31788 -32.21642 -31.75379 -29.82061 -28.34232 -26.05073 -24.81090 -24.58289 -23.24328 -22.89769 -22.54788 -21.27172 -20.51999 -20.24888 -19.41872 -17.95434 -17.80733 -17.10630 -16.78472 -16.09747 -15.75371 -15.20878 -14.87248 -14.82476 -14.43600 -14.10190 -14.03012 -13.78977 -13.47205 -13.15603 -13.06372 -12.69247 -12.51627 -12.27391 -11.96205 -11.92178 -11.80681 -11.75978 -11.57241 -11.48463 -11.01624 -10.91739 -10.81443 -10.64352 -10.62891 -10.33630 -10.21712 -10.11910 -9.96096 -9.73248 -9.69284 -9.56718 -8.84230 -8.58855 -6.87795 -5.70886 -3.00617 0.97432 1.56960 2.53884 2.83061 3.09753 3.46775 3.50891 3.52504 3.60539 3.74155 4.06663 4.46151 4.57943 4.64284 4.68922 4.71630 4.79164 4.80057 4.84703 4.87201 5.09324 5.20326 5.24192 5.30117 5.43119 5.51498 5.59430 5.60613 5.64769 5.67401 5.71903 5.77652 5.87846 5.90043 5.91610 5.96442 5.99811 6.13817 6.20594 6.29954 6.41977 6.52288 6.57583 6.79355 6.87480 7.36175 7.72929 7.97729 8.13550 8.46801 9.57815 10.15608 10.49642 11.51342 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.003304 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.756324 B = 8471.285858 C = 9798.349681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.097 3.903 6 N -0.601 5.601 7 C 0.590 3.410 8 O -0.513 6.513 9 C -0.230 4.230 10 C -0.022 4.022 11 O 0.098 5.902 12 N -0.357 5.357 13 C 0.098 3.902 14 C -0.093 4.093 15 C -0.161 4.161 16 C -0.158 4.158 17 C 0.122 3.878 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.227 0.773 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.019 0.981 46 H 0.028 0.972 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -0.073 -22.943 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.026 4.026 6 N -0.334 5.334 7 C 0.376 3.624 8 O -0.389 6.389 9 C -0.237 4.237 10 C -0.104 4.104 11 O 0.037 5.963 12 N -0.063 5.063 13 C -0.064 4.064 14 C -0.112 4.112 15 C -0.199 4.199 16 C -0.196 4.196 17 C 0.001 3.999 18 C -0.121 4.121 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.243 0.757 38 H 0.155 0.845 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.453 -1.155 -23.101 23.386 hybrid contribution -0.325 0.730 1.584 1.774 sum 3.128 -0.425 -21.518 21.748 Atomic orbital electron populations 1.21880 0.94883 1.02000 1.01750 1.21092 0.96063 0.99345 0.93830 0.90988 1.21970 0.94318 1.01733 0.98589 1.21973 0.95348 0.99097 0.86170 1.48028 1.42453 1.34785 1.08151 1.16926 0.79440 0.79400 0.86660 1.90890 1.54244 1.61853 1.31875 1.22302 1.11312 0.93290 0.96798 1.26357 0.99175 0.96755 0.88103 1.84564 1.63928 1.09867 1.37968 1.73581 1.18809 1.01481 1.12399 1.23799 0.98772 0.93061 0.90747 1.20390 1.05991 0.86397 0.98415 1.23024 0.98257 0.95358 1.03239 1.23051 0.91749 1.01544 1.03272 1.21794 0.93774 0.99268 0.85087 1.21725 0.94281 1.00862 0.95260 0.90729 1.20718 0.96866 0.94033 0.85288 1.42404 1.65349 1.29210 1.00792 1.19148 1.28072 1.06427 0.83788 0.91308 1.24741 1.00766 0.97484 0.97772 1.69654 1.42228 1.17232 1.28658 0.86297 0.77978 0.77669 0.84396 1.21335 1.21704 1.21293 0.91563 0.93208 0.92775 0.90766 0.91454 0.90918 0.90043 0.75702 0.84459 0.88107 0.87705 0.87462 0.88613 0.91291 0.87622 0.96370 0.95477 0.78145 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.81 37.16 0.33 -1.33 16 2 C -0.08 -0.97 2.23 -90.58 -0.20 -1.17 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -1.20 5.36 -26.61 -0.14 -1.34 16 5 C 0.10 0.88 5.97 -3.71 -0.02 0.86 16 6 N -0.60 -8.04 2.97 -174.04 -0.52 -8.56 16 7 C 0.59 9.07 7.66 -12.53 -0.10 8.98 16 8 O -0.51 -10.29 16.54 5.27 0.09 -10.20 16 9 C -0.23 -2.86 5.53 -102.89 -0.57 -3.43 16 10 C -0.02 -0.19 10.02 30.41 0.30 0.11 16 11 O 0.10 0.99 11.06 18.65 0.21 1.19 16 12 N -0.36 -4.36 11.71 34.78 0.41 -3.96 16 13 C 0.10 1.27 7.08 -79.76 -0.56 0.71 16 14 C -0.09 -1.16 6.31 -91.77 -0.58 -1.74 16 15 C -0.16 -1.64 10.16 -26.73 -0.27 -1.91 16 16 C -0.16 -1.64 10.23 -26.73 -0.27 -1.91 16 17 C 0.12 1.96 5.50 -3.71 -0.02 1.94 16 18 C -0.10 -1.59 1.92 -90.50 -0.17 -1.76 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.16 3.08 5.41 -4.04 -0.02 3.06 16 21 N -0.73 -18.56 5.38 -59.91 -0.32 -18.88 16 22 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 26 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.60 4.47 -51.93 -0.23 0.37 16 37 H 0.23 0.90 7.56 -52.49 -0.40 0.51 16 38 H 0.14 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.10 1.03 7.97 -51.93 -0.41 0.61 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.11 2.16 6.24 -51.92 -0.32 1.84 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 47 H 0.38 10.45 6.89 -40.82 -0.28 10.17 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -34.30 386.85 -8.49 -42.80 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.34 Total: 8.48 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.55 Total: -6.36 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.29 Total: -59.38 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.29 Total: -9.00 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.30 -8.49 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133108454.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.726 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds