Wall clock time and date at job start Tue Mar 31 2020 17:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.46274 * 2 1 4 4 C 1.53039 * 109.45008 * 119.97355 * 2 1 3 5 5 C 1.53625 * 109.24557 * 58.52142 * 4 2 1 6 6 N 1.46925 * 108.54011 * 54.85677 * 5 4 2 7 7 C 1.34777 * 120.62672 * 126.37259 * 6 5 4 8 8 O 1.21607 * 119.99803 * 185.53684 * 7 6 5 9 9 C 1.47398 * 120.00156 * 5.53484 * 7 6 5 10 10 C 1.37356 * 128.56751 * 35.80805 * 9 7 6 11 11 O 1.33489 * 106.34296 * 180.23938 * 10 9 7 12 12 N 1.20659 * 113.15904 * 359.73887 * 11 10 9 13 13 C 1.30015 * 112.29910 * 0.02562 * 12 11 10 14 14 C 1.50701 * 127.33495 * 179.97438 * 13 12 11 15 15 C 1.53003 * 117.49575 * 60.02644 * 14 13 12 16 16 C 1.52997 * 59.99919 * 252.50719 * 15 14 13 17 17 C 1.46924 * 118.74149 * 306.09393 * 6 5 4 18 18 C 1.53042 * 109.45956 * 240.03080 * 2 1 3 19 19 H 1.09003 * 109.50203 * 181.40985 * 18 2 1 20 20 C 1.53005 * 109.52384 * 61.32507 * 18 2 1 21 21 N 1.46498 * 109.47160 * 175.14713 * 20 18 2 22 22 C 1.36935 * 120.00208 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99650 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00310 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99752 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00104 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47259 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47161 * 119.99960 * 26 24 22 29 29 H 1.48494 * 109.47387 * 239.99877 * 26 24 22 30 30 H 1.09002 * 109.47452 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47121 * 299.96632 * 1 2 3 32 32 H 1.09002 * 109.47651 * 59.96565 * 1 2 3 33 33 H 1.09000 * 109.49782 * 178.60118 * 4 2 1 34 34 H 1.09004 * 109.49592 * 298.65803 * 4 2 1 35 35 H 1.09000 * 109.73680 * 295.11862 * 5 4 2 36 36 H 1.08996 * 109.66150 * 174.55033 * 5 4 2 37 37 H 1.08007 * 126.82791 * 359.97438 * 10 9 7 38 38 H 1.09002 * 115.55968 * 205.71765 * 14 13 12 39 39 H 1.09003 * 117.49294 * 145.01581 * 15 14 13 40 40 H 1.08996 * 117.49611 * 0.02562 * 15 14 13 41 41 H 1.09004 * 117.49312 * 107.48978 * 16 15 14 42 42 H 1.08998 * 117.50193 * 252.51154 * 16 15 14 43 43 H 1.09000 * 109.58566 * 173.65016 * 17 6 5 44 44 H 1.09003 * 109.58582 * 294.07532 * 17 6 5 45 45 H 1.08999 * 109.46843 * 295.14475 * 20 18 2 46 46 H 1.08993 * 109.46705 * 55.14528 * 20 18 2 47 47 H 0.97000 * 119.99690 * 0.02562 * 21 20 18 48 48 H 0.97003 * 120.00261 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7209 1.2501 5 6 1.4940 -2.1570 1.2642 6 7 1.8619 -2.8089 -0.0001 7 6 2.5147 -3.9881 0.0000 8 8 2.9025 -4.4684 -1.0478 9 6 2.7586 -4.6954 1.2699 10 6 1.9495 -4.7706 2.3773 11 8 2.6033 -5.5171 3.2702 12 7 3.6738 -5.9052 2.8713 13 6 3.9275 -5.4973 1.6631 14 6 5.1592 -5.7810 0.8425 15 6 5.4817 -7.2447 0.5352 16 6 6.3321 -6.4693 1.5434 17 6 1.4992 -2.1542 -1.2644 18 6 2.0398 -0.7208 -1.2501 19 1 3.1295 -0.7432 -1.2382 20 6 1.5577 0.0192 -2.4994 21 7 2.1407 -0.6027 -3.6909 22 6 1.8504 -0.1067 -4.9338 23 1 1.1920 0.7433 -5.0357 24 6 2.4024 -0.6964 -6.0627 25 7 3.2052 -1.7319 -5.9384 26 14 2.0059 -0.0202 -7.7582 27 1 1.0858 1.1380 -7.6265 28 1 3.2601 0.4165 -8.4228 29 1 1.3560 -1.0777 -8.5734 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8897 33 1 3.1292 -0.7432 1.2384 34 1 1.6960 -0.1932 2.1398 35 1 0.4087 -2.1375 1.3630 36 1 1.9292 -2.7065 2.0988 37 1 0.9793 -4.3128 2.5025 38 1 5.3942 -5.0422 0.0762 39 1 5.9289 -7.4689 -0.4333 40 1 4.8028 -8.0024 0.9263 41 1 6.2128 -6.7171 2.5982 42 1 7.3387 -6.1834 1.2383 43 1 1.9377 -2.7019 -2.0985 44 1 0.4142 -2.1345 -1.3675 45 1 0.4705 -0.0345 -2.5567 46 1 1.8676 1.0628 -2.4457 47 1 2.7323 -1.3659 -3.5992 48 1 3.5907 -2.1443 -6.7273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133108455.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:09 Heat of formation + Delta-G solvation = 67.169190 kcal Electronic energy + Delta-G solvation = -29474.898738 eV Core-core repulsion = 25534.502251 eV Total energy + Delta-G solvation = -3940.396486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.14680 -40.35505 -38.14718 -37.54330 -35.06674 -33.79517 -33.20706 -32.16842 -31.75488 -29.81976 -27.77925 -26.22811 -25.13707 -24.68879 -23.62287 -23.18741 -22.54903 -21.24933 -20.53143 -20.23450 -18.61717 -17.93721 -17.54574 -17.14571 -16.80004 -16.06980 -15.75362 -15.27004 -15.02127 -14.94464 -14.72007 -14.26497 -13.92968 -13.61695 -13.58381 -13.22122 -12.98368 -12.75059 -12.50764 -12.27171 -12.04375 -11.87855 -11.79087 -11.69961 -11.48410 -11.27421 -11.12839 -10.93691 -10.82339 -10.67876 -10.62263 -10.30380 -10.21707 -10.08244 -9.92996 -9.72801 -9.70557 -9.58413 -8.84643 -8.53107 -6.87906 -5.71051 -3.00862 0.91914 1.55138 2.58913 2.89673 3.10469 3.46051 3.51056 3.53834 3.65247 3.73544 4.05244 4.46625 4.57503 4.63302 4.68188 4.72232 4.78339 4.79383 4.84635 4.89148 5.12507 5.17110 5.22434 5.26049 5.44234 5.49239 5.54794 5.58310 5.62898 5.65484 5.72490 5.77731 5.85333 5.91276 5.92003 5.94655 5.98838 6.12210 6.28994 6.31340 6.33108 6.53224 6.60277 6.76179 6.87829 7.37526 7.73841 7.96950 8.16049 8.46579 9.57739 10.15613 10.49645 11.51237 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003298 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.611357 B = 8487.588760 C =10310.443516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.128 4.128 5 C 0.094 3.906 6 N -0.602 5.602 7 C 0.587 3.413 8 O -0.511 6.511 9 C -0.232 4.232 10 C -0.020 4.020 11 O 0.097 5.903 12 N -0.358 5.358 13 C 0.099 3.901 14 C -0.087 4.087 15 C -0.154 4.154 16 C -0.165 4.165 17 C 0.122 3.878 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.227 0.773 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.023 0.977 46 H 0.021 0.979 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -4.433 22.825 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.166 4.166 5 C -0.029 4.029 6 N -0.336 5.336 7 C 0.374 3.626 8 O -0.386 6.386 9 C -0.240 4.240 10 C -0.101 4.101 11 O 0.037 5.963 12 N -0.064 5.064 13 C -0.062 4.062 14 C -0.106 4.106 15 C -0.192 4.192 16 C -0.203 4.203 17 C 0.001 3.999 18 C -0.122 4.122 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.243 0.757 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.718 -5.332 23.017 23.689 hybrid contribution -0.413 0.720 -1.598 1.801 sum -2.132 -4.612 21.419 22.013 Atomic orbital electron populations 1.21990 0.95176 1.01934 1.01897 1.21078 0.96032 0.99464 0.93849 0.90735 1.22002 1.01239 0.94741 0.98594 1.22140 1.00300 0.94256 0.86164 1.47999 1.57156 1.20333 1.08096 1.16921 0.78344 0.80741 0.86632 1.90897 1.49538 1.66199 1.31940 1.22330 0.96927 1.07095 0.97606 1.26464 0.99926 0.95623 0.88123 1.84569 1.22589 1.50442 1.38735 1.73589 0.99329 1.19724 1.13768 1.23826 0.96188 0.95520 0.90711 1.20281 0.90966 0.98342 1.01003 1.23010 1.02662 0.92466 1.01027 1.23053 0.95273 1.03149 0.98797 1.21811 0.99966 0.93062 0.85093 1.21693 1.00976 0.94277 0.95226 0.90762 1.20675 0.95983 0.94733 0.85331 1.42431 1.57076 1.37498 1.00812 1.19236 1.23407 1.10875 0.83759 0.91206 1.24751 1.00036 0.98287 0.97799 1.69685 1.35559 1.24053 1.28405 0.86150 0.77392 0.77960 0.84876 1.20606 1.21911 1.21884 0.92481 0.93101 0.91704 0.91451 0.90756 0.90702 0.90044 0.75656 0.84885 0.87460 0.88639 0.88141 0.87784 0.87693 0.91053 0.95922 0.96153 0.78099 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.11 37.15 0.30 -1.26 16 2 C -0.09 -0.98 2.71 -90.58 -0.25 -1.22 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.18 5.64 -26.39 -0.15 -1.33 16 5 C 0.09 0.84 5.06 -3.49 -0.02 0.82 16 6 N -0.60 -7.96 2.97 -173.78 -0.52 -8.48 16 7 C 0.59 9.00 7.66 -12.53 -0.10 8.90 16 8 O -0.51 -10.20 16.53 5.27 0.09 -10.11 16 9 C -0.23 -2.88 5.67 -102.89 -0.58 -3.46 16 10 C -0.02 -0.17 9.98 30.41 0.30 0.14 16 11 O 0.10 0.98 11.06 18.66 0.21 1.18 16 12 N -0.36 -4.36 11.71 34.78 0.41 -3.95 16 13 C 0.10 1.29 7.08 -79.76 -0.56 0.72 16 14 C -0.09 -1.08 6.32 -91.77 -0.58 -1.66 16 15 C -0.15 -1.66 10.23 -26.73 -0.27 -1.93 16 16 C -0.17 -1.65 10.16 -26.73 -0.27 -1.92 16 17 C 0.12 1.94 5.06 -3.71 -0.02 1.92 16 18 C -0.10 -1.60 2.15 -90.49 -0.19 -1.79 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.16 3.13 5.19 -4.04 -0.02 3.11 16 21 N -0.73 -18.64 5.38 -59.91 -0.32 -18.96 16 22 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 26 Si 0.90 22.69 29.55 -169.99 -5.02 17.66 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 30 H 0.06 0.57 4.96 -51.93 -0.26 0.31 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.53 6.69 -51.93 -0.35 0.18 16 36 H 0.08 0.59 4.57 -51.93 -0.24 0.35 16 37 H 0.23 0.93 7.11 -52.48 -0.37 0.55 16 38 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.00 7.97 -51.93 -0.41 0.59 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 2.14 6.19 -51.93 -0.32 1.82 16 44 H 0.07 1.08 6.69 -51.93 -0.35 0.73 16 45 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.38 10.51 6.89 -40.82 -0.28 10.23 16 48 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -34.44 380.03 -8.41 -42.85 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.04 Total: 8.53 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.66 Total: -6.39 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.29 Total: -59.44 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.29 Total: -8.93 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.44 -8.41 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133108455.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.015 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds