Wall clock time and date at job start Tue Mar 31 2020 17:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.46274 * 2 1 4 4 C 1.53039 * 109.45008 * 119.97355 * 2 1 3 5 5 C 1.53625 * 109.24557 * 58.52142 * 4 2 1 6 6 N 1.46925 * 108.54011 * 54.85677 * 5 4 2 7 7 C 1.34777 * 120.62672 * 126.37259 * 6 5 4 8 8 O 1.21607 * 119.99803 * 185.53684 * 7 6 5 9 9 C 1.47398 * 120.00156 * 5.53484 * 7 6 5 10 10 C 1.37356 * 128.56751 * 35.80805 * 9 7 6 11 11 O 1.33489 * 106.34296 * 180.23938 * 10 9 7 12 12 N 1.20659 * 113.15904 * 359.73887 * 11 10 9 13 13 C 1.30015 * 112.29910 * 0.02562 * 12 11 10 14 14 C 1.50701 * 127.33495 * 179.97438 * 13 12 11 15 15 C 1.53003 * 117.49575 * 60.02644 * 14 13 12 16 16 C 1.52997 * 59.99919 * 252.50719 * 15 14 13 17 17 C 1.46924 * 118.74149 * 306.09393 * 6 5 4 18 18 C 1.53042 * 109.45956 * 240.03080 * 2 1 3 19 19 H 1.09003 * 109.50203 * 181.40985 * 18 2 1 20 20 C 1.53005 * 109.52384 * 61.32507 * 18 2 1 21 21 N 1.46498 * 109.47160 * 175.14713 * 20 18 2 22 22 C 1.36935 * 120.00208 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99650 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00310 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99752 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00104 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47259 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47161 * 119.99960 * 26 24 22 29 29 H 1.48494 * 109.47387 * 239.99877 * 26 24 22 30 30 H 1.09002 * 109.47452 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47121 * 299.96632 * 1 2 3 32 32 H 1.09002 * 109.47651 * 59.96565 * 1 2 3 33 33 H 1.09000 * 109.49782 * 178.60118 * 4 2 1 34 34 H 1.09004 * 109.49592 * 298.65803 * 4 2 1 35 35 H 1.09000 * 109.73680 * 295.11862 * 5 4 2 36 36 H 1.08996 * 109.66150 * 174.55033 * 5 4 2 37 37 H 1.08007 * 126.82791 * 359.97438 * 10 9 7 38 38 H 1.09002 * 115.55968 * 205.71765 * 14 13 12 39 39 H 1.09003 * 117.49294 * 145.01581 * 15 14 13 40 40 H 1.08996 * 117.49611 * 0.02562 * 15 14 13 41 41 H 1.09004 * 117.49312 * 107.48978 * 16 15 14 42 42 H 1.08998 * 117.50193 * 252.51154 * 16 15 14 43 43 H 1.09000 * 109.58566 * 173.65016 * 17 6 5 44 44 H 1.09003 * 109.58582 * 294.07532 * 17 6 5 45 45 H 1.08999 * 109.46843 * 295.14475 * 20 18 2 46 46 H 1.08993 * 109.46705 * 55.14528 * 20 18 2 47 47 H 0.97000 * 119.99690 * 0.02562 * 21 20 18 48 48 H 0.97003 * 120.00261 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7209 1.2501 5 6 1.4940 -2.1570 1.2642 6 7 1.8619 -2.8089 -0.0001 7 6 2.5147 -3.9881 0.0000 8 8 2.9025 -4.4684 -1.0478 9 6 2.7586 -4.6954 1.2699 10 6 1.9495 -4.7706 2.3773 11 8 2.6033 -5.5171 3.2702 12 7 3.6738 -5.9052 2.8713 13 6 3.9275 -5.4973 1.6631 14 6 5.1592 -5.7810 0.8425 15 6 5.4817 -7.2447 0.5352 16 6 6.3321 -6.4693 1.5434 17 6 1.4992 -2.1542 -1.2644 18 6 2.0398 -0.7208 -1.2501 19 1 3.1295 -0.7432 -1.2382 20 6 1.5577 0.0192 -2.4994 21 7 2.1407 -0.6027 -3.6909 22 6 1.8504 -0.1067 -4.9338 23 1 1.1920 0.7433 -5.0357 24 6 2.4024 -0.6964 -6.0627 25 7 3.2052 -1.7319 -5.9384 26 14 2.0059 -0.0202 -7.7582 27 1 1.0858 1.1380 -7.6265 28 1 3.2601 0.4165 -8.4228 29 1 1.3560 -1.0777 -8.5734 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8897 33 1 3.1292 -0.7432 1.2384 34 1 1.6960 -0.1932 2.1398 35 1 0.4087 -2.1375 1.3630 36 1 1.9292 -2.7065 2.0988 37 1 0.9793 -4.3128 2.5025 38 1 5.3942 -5.0422 0.0762 39 1 5.9289 -7.4689 -0.4333 40 1 4.8028 -8.0024 0.9263 41 1 6.2128 -6.7171 2.5982 42 1 7.3387 -6.1834 1.2383 43 1 1.9377 -2.7019 -2.0985 44 1 0.4142 -2.1345 -1.3675 45 1 0.4705 -0.0345 -2.5567 46 1 1.8676 1.0628 -2.4457 47 1 2.7323 -1.3659 -3.5992 48 1 3.5907 -2.1443 -6.7273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133108455.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:08 Heat of formation + Delta-G solvation = 44.642444 kcal Electronic energy + Delta-G solvation = -29475.875571 eV Core-core repulsion = 25534.502251 eV Total energy + Delta-G solvation = -3941.373319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.03705 -41.47167 -39.31444 -38.46857 -36.68020 -35.16500 -34.14895 -33.49676 -32.98558 -31.39992 -28.76728 -27.66874 -26.32634 -25.63594 -24.91270 -24.57245 -23.39974 -22.60502 -21.39702 -21.34133 -19.79309 -18.99436 -18.82073 -18.47474 -17.93426 -17.22281 -16.78382 -16.62986 -16.36202 -16.01290 -15.75824 -15.63308 -15.30126 -15.00159 -14.68960 -14.54032 -14.33473 -14.06612 -13.79143 -13.20402 -13.05559 -13.03464 -12.88879 -12.74954 -12.64364 -12.59300 -12.42653 -12.36930 -12.12786 -12.01612 -11.90579 -11.73533 -11.52758 -11.39801 -11.23848 -11.17703 -10.94638 -10.65404 -10.57639 -9.63889 -9.00502 -7.94747 -5.25116 0.10091 0.61304 1.45078 1.46867 1.56975 1.59175 1.89817 2.21297 2.55096 2.76528 2.84614 3.18675 3.38518 3.53522 3.71808 3.78882 3.79486 3.85789 3.87514 3.95908 3.99168 4.06429 4.21752 4.27529 4.38666 4.49274 4.54778 4.58076 4.61422 4.63599 4.68914 4.77907 4.84185 4.86353 4.92358 4.99208 5.01160 5.09873 5.11383 5.18967 5.27370 5.32497 5.42116 5.47250 5.49600 5.63644 6.25891 6.30662 7.02106 7.15705 7.31388 8.08328 8.29942 9.28927 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003298 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.611357 B = 8487.588760 C =10310.443516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.077 0.923 4 C -0.123 4.123 5 C 0.087 3.913 6 N -0.595 5.595 7 C 0.584 3.416 8 O -0.577 6.577 9 C -0.268 4.268 10 C 0.028 3.972 11 O 0.109 5.891 12 N -0.367 5.367 13 C 0.081 3.919 14 C -0.113 4.113 15 C -0.154 4.154 16 C -0.143 4.143 17 C 0.131 3.869 18 C -0.091 4.091 19 H 0.044 0.956 20 C 0.160 3.840 21 N -0.749 5.749 22 C -0.243 4.243 23 H 0.080 0.920 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.975 3.025 27 H -0.261 1.261 28 H -0.294 1.294 29 H -0.294 1.294 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.280 0.720 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.034 0.966 46 H 0.022 0.978 47 H 0.370 0.630 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 -3.140 26.177 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.034 4.034 6 N -0.327 5.327 7 C 0.373 3.627 8 O -0.457 6.457 9 C -0.275 4.275 10 C -0.054 4.054 11 O 0.049 5.951 12 N -0.073 5.073 13 C -0.080 4.080 14 C -0.132 4.132 15 C -0.193 4.193 16 C -0.180 4.180 17 C 0.009 3.991 18 C -0.110 4.110 19 H 0.063 0.937 20 C 0.033 3.967 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.804 3.196 27 H -0.185 1.185 28 H -0.222 1.222 29 H -0.222 1.222 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.295 0.705 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.201 0.799 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.110 -3.979 26.445 27.057 hybrid contribution 0.270 0.378 -2.554 2.595 sum -3.840 -3.601 23.892 24.465 Atomic orbital electron populations 1.21967 0.93471 1.02474 1.02691 1.21065 0.97315 0.99151 0.92322 0.90477 1.22010 1.00339 0.94985 0.98752 1.22595 1.02646 0.93840 0.84314 1.48032 1.56218 1.19669 1.08777 1.17355 0.77430 0.81014 0.86912 1.90862 1.52286 1.68010 1.34497 1.22040 0.98523 1.09156 0.97790 1.27245 0.99973 0.92587 0.85577 1.84559 1.21992 1.49989 1.38594 1.73587 1.00256 1.20207 1.13243 1.23940 0.96655 0.96164 0.91213 1.20241 0.92652 0.98668 1.01686 1.23061 1.02944 0.91557 1.01692 1.23103 0.95161 1.01123 0.98658 1.21450 0.99993 0.92562 0.85116 1.21552 0.99124 0.94365 0.95996 0.93743 1.20873 0.96169 0.94704 0.84939 1.42709 1.57105 1.37284 1.02069 1.19705 1.22381 1.10467 0.84966 0.90218 1.25643 1.00602 0.98975 1.01905 1.69879 1.37446 1.25956 1.29034 0.85044 0.77161 0.77630 0.79759 1.18524 1.22154 1.22162 0.92012 0.89847 0.93430 0.93111 0.86639 0.87124 0.87714 0.70511 0.87366 0.87094 0.88601 0.87702 0.86267 0.93263 0.89791 0.94773 0.96023 0.79875 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.11 71.98 0.58 -1.89 16 2 C -0.08 -1.63 2.71 -10.77 -0.03 -1.66 16 3 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.12 -1.82 5.64 30.82 0.17 -1.65 16 5 C 0.09 1.19 5.06 86.51 0.44 1.63 16 6 N -0.60 -15.45 2.97 -821.97 -2.44 -17.88 16 7 C 0.58 18.55 7.66 86.66 0.66 19.21 16 8 O -0.58 -25.28 16.53 -4.05 -0.07 -25.35 16 9 C -0.27 -6.42 5.67 -18.74 -0.11 -6.52 16 10 C 0.03 0.37 9.98 67.61 0.67 1.04 16 11 O 0.11 1.84 11.06 77.02 0.85 2.70 16 12 N -0.37 -8.39 11.71 -44.78 -0.52 -8.91 16 13 C 0.08 2.12 7.08 45.16 0.32 2.44 16 14 C -0.11 -3.01 6.32 -11.54 -0.07 -3.08 16 15 C -0.15 -3.49 10.23 30.59 0.31 -3.18 16 16 C -0.14 -2.87 10.16 30.59 0.31 -2.56 16 17 C 0.13 4.34 5.06 86.36 0.44 4.78 16 18 C -0.09 -2.89 2.15 -10.71 -0.02 -2.92 16 19 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 20 C 0.16 6.33 5.19 86.38 0.45 6.78 16 21 N -0.75 -39.80 5.38 -343.46 -1.85 -41.65 16 22 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 25 N -0.97 -63.12 13.06 21.65 0.28 -62.84 16 26 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 27 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 30 H 0.06 0.97 4.96 -2.39 -0.01 0.96 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.97 6.58 -2.39 -0.02 0.95 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.85 6.69 -2.39 -0.02 0.84 16 36 H 0.10 0.99 4.57 -2.39 -0.01 0.98 16 37 H 0.28 0.43 7.11 -2.91 -0.02 0.41 16 38 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.10 2.02 7.97 -2.38 -0.02 2.00 16 42 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.05 2.21 6.19 -2.39 -0.01 2.19 16 44 H 0.08 2.52 6.69 -2.39 -0.02 2.51 16 45 H 0.03 1.30 6.73 -2.39 -0.02 1.28 16 46 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 47 H 0.37 21.71 6.89 -92.71 -0.64 21.07 16 48 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -82.94 380.03 4.08 -78.86 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.35 Total: 30.44 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.44 Total: -5.05 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -4.53 Total: -131.28 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.78 Total: -22.65 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -82.94 4.08 -78.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133108455.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.500 kcal (2) G-P(sol) polarization free energy of solvation -82.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds