Wall clock time and date at job start Tue Mar 31 2020 17:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.45726 * 2 1 4 4 C 1.53034 * 109.45952 * 240.03028 * 2 1 3 5 5 C 1.53192 * 109.31594 * 301.35799 * 4 2 1 6 6 N 1.46931 * 108.77206 * 305.36971 * 5 4 2 7 7 C 1.34780 * 120.62742 * 233.58444 * 6 5 4 8 8 O 1.21283 * 119.99825 * 180.02562 * 7 6 5 9 9 C 1.50702 * 120.00211 * 359.97438 * 7 6 5 10 10 O 1.42900 * 109.47307 * 180.02562 * 9 7 6 11 11 C 1.35908 * 116.99839 * 180.02562 * 10 9 7 12 12 C 1.39145 * 120.47207 * 179.97438 * 11 10 9 13 13 C 1.38537 * 118.37528 * 179.72022 * 12 11 10 14 14 C 1.38250 * 119.22044 * 0.02562 * 13 12 11 15 15 N 1.31848 * 120.88724 * 0.02562 * 14 13 12 16 16 C 1.31843 * 121.78241 * 359.95914 * 15 14 13 17 17 C 1.46919 * 118.73942 * 53.85562 * 6 5 4 18 18 C 1.53038 * 109.44547 * 119.96674 * 2 1 3 19 19 H 1.09007 * 109.49511 * 178.63402 * 18 2 1 20 20 C 1.52995 * 109.49780 * 298.69696 * 18 2 1 21 21 N 1.46507 * 109.46863 * 185.00150 * 20 18 2 22 22 C 1.36939 * 119.99947 * 180.02562 * 21 20 18 23 23 H 1.08006 * 119.99746 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00253 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99565 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00299 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47034 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47168 * 119.99600 * 26 24 22 29 29 H 1.48493 * 109.47101 * 240.00123 * 26 24 22 30 30 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47565 * 299.97346 * 1 2 3 32 32 H 1.09007 * 109.47007 * 59.97139 * 1 2 3 33 33 H 1.09005 * 109.49961 * 181.40577 * 4 2 1 34 34 H 1.09000 * 109.50330 * 61.31219 * 4 2 1 35 35 H 1.08998 * 109.58834 * 185.58597 * 5 4 2 36 36 H 1.08996 * 109.58775 * 65.15362 * 5 4 2 37 37 H 1.09005 * 109.47029 * 59.99762 * 9 7 6 38 38 H 1.09004 * 109.46841 * 299.99877 * 9 7 6 39 39 H 1.07999 * 120.81286 * 359.69753 * 12 11 10 40 40 H 1.08000 * 120.38885 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.55789 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.65666 * 180.02562 * 16 15 14 43 43 H 1.09006 * 109.58342 * 65.93140 * 17 6 5 44 44 H 1.09005 * 109.58871 * 186.34835 * 17 6 5 45 45 H 1.08994 * 109.47718 * 304.99947 * 20 18 2 46 46 H 1.08998 * 109.47174 * 65.00339 * 20 18 2 47 47 H 0.97000 * 120.00429 * 0.02562 * 21 20 18 48 48 H 0.96999 * 119.99899 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 1.4993 -2.1541 -1.2643 6 7 1.8620 -2.8089 0.0001 7 6 2.5149 -3.9880 0.0001 8 8 2.8082 -4.5186 1.0505 9 6 2.8793 -4.6476 -1.3049 10 8 3.5595 -5.8769 -1.0437 11 6 3.9605 -6.6012 -2.1215 12 6 4.6295 -7.8092 -1.9505 13 6 5.0133 -8.5148 -3.0793 14 6 4.7219 -7.9997 -4.3287 15 7 4.0872 -6.8511 -4.4560 16 6 3.7047 -6.1491 -3.4076 17 6 1.4940 -2.1568 1.2642 18 6 2.0395 -0.7208 1.2502 19 1 3.1293 -0.7426 1.2388 20 6 1.5565 0.0195 2.4989 21 7 2.1417 -0.5999 3.6907 22 6 1.8502 -0.1039 4.9334 23 1 1.1885 0.7437 5.0349 24 6 2.4051 -0.6903 6.0625 25 7 3.2118 -1.7229 5.9387 26 14 2.0069 -0.0141 7.7577 27 1 1.0823 1.1404 7.6254 28 1 1.3615 -1.0734 8.5742 29 1 3.2597 0.4279 8.4211 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 3.1296 -0.7431 -1.2381 34 1 1.6960 -0.1935 -2.1398 35 1 1.9380 -2.7018 -2.0983 36 1 0.4144 -2.1345 -1.3675 37 1 3.5301 -3.9862 -1.8770 38 1 1.9729 -4.8485 -1.8760 39 1 4.8447 -8.1874 -0.9620 40 1 5.5340 -9.4562 -2.9843 41 1 5.0182 -8.5454 -5.2123 42 1 3.1864 -5.2126 -3.5517 43 1 0.4086 -2.1375 1.3629 44 1 1.9291 -2.7063 2.0990 45 1 1.8639 1.0637 2.4441 46 1 0.4695 -0.0367 2.5569 47 1 2.7356 -1.3614 3.5996 48 1 3.5993 -2.1330 6.7278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133166236.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:38 Heat of formation + Delta-G solvation = -20.005030 kcal Electronic energy + Delta-G solvation = -28670.052379 eV Core-core repulsion = 24725.875735 eV Total energy + Delta-G solvation = -3944.176644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08158 -40.32821 -38.69085 -37.63750 -35.01446 -33.60903 -32.76321 -31.92741 -30.85198 -30.01160 -28.93563 -27.51341 -25.41231 -24.79222 -23.90815 -23.28482 -23.06622 -21.25126 -19.99080 -18.79831 -18.30639 -17.36628 -17.11471 -16.98143 -16.67287 -16.47309 -15.76719 -15.05644 -15.03197 -14.94558 -14.74682 -14.33764 -13.95505 -13.92846 -13.59786 -13.44794 -13.17834 -13.04655 -12.90154 -12.71029 -12.51817 -12.49261 -11.99085 -11.81037 -11.67117 -11.27716 -11.13613 -10.92469 -10.81653 -10.67856 -10.30307 -10.22543 -10.07573 -9.97224 -9.87630 -9.67330 -9.57654 -8.84515 -8.82318 -8.55460 -6.87673 -5.70606 -3.00544 0.74336 0.93916 2.26522 2.52612 3.25926 3.44409 3.46449 3.51254 3.54182 4.07646 4.16006 4.32992 4.50728 4.54867 4.60015 4.63161 4.66008 4.72785 4.78135 4.85920 5.02153 5.11122 5.16177 5.18596 5.21288 5.48602 5.58192 5.60378 5.62065 5.64776 5.75643 5.76324 5.82940 5.90163 5.97858 6.11589 6.11899 6.27955 6.30758 6.32793 6.51365 6.56461 6.75470 6.83829 6.87476 7.34115 7.57421 7.74126 8.12964 8.46985 9.58016 10.15860 10.49742 11.51686 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014352 B = 0.002562 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.472218 B =10924.338742 C =12641.083817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.102 3.898 6 N -0.607 5.607 7 C 0.512 3.488 8 O -0.504 6.504 9 C 0.040 3.960 10 O -0.281 6.281 11 C 0.083 3.917 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.056 3.944 15 N -0.451 5.451 16 C 0.013 3.987 17 C 0.122 3.878 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.160 3.840 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.021 0.979 46 H 0.023 0.977 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -7.036 -25.074 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.168 4.168 5 C -0.021 4.021 6 N -0.342 5.342 7 C 0.297 3.703 8 O -0.377 6.377 9 C -0.039 4.039 10 O -0.191 6.191 11 C 0.035 3.965 12 C -0.132 4.132 13 C -0.150 4.150 14 C -0.102 4.102 15 N -0.160 5.160 16 C -0.145 4.145 17 C 0.001 3.999 18 C -0.122 4.122 19 H 0.093 0.907 20 C 0.032 3.968 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.175 0.825 42 H 0.174 0.826 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.039 0.961 46 H 0.041 0.959 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.412 -6.950 -24.956 25.944 hybrid contribution 0.158 -0.005 1.559 1.567 sum -1.255 -6.955 -23.397 24.441 Atomic orbital electron populations 1.21996 0.95169 1.01982 1.01912 1.21073 0.96057 0.99477 0.93806 0.90691 1.21952 1.01254 0.94843 0.98730 1.21837 1.00807 0.94070 0.85351 1.48070 1.57405 1.20516 1.08237 1.19844 0.78871 0.81494 0.90057 1.90836 1.51757 1.62543 1.32603 1.22630 0.98129 0.85616 0.97484 1.86216 1.71032 1.32614 1.29260 1.20161 0.95924 0.92872 0.87519 1.21036 0.98545 0.92711 1.00902 1.22051 0.99566 1.00794 0.92566 1.22672 0.97397 0.92846 0.97268 1.67516 1.08752 1.06484 1.33230 1.22910 1.03076 1.01328 0.87216 1.21890 0.99969 0.92928 0.85150 1.21776 1.00919 0.94245 0.95237 0.90724 1.20679 0.95993 0.94744 0.85343 1.42434 1.56822 1.37738 1.00827 1.19235 1.23211 1.11062 0.83760 0.91189 1.24766 1.00024 0.98331 0.97844 1.69685 1.35327 1.24267 1.28421 0.86140 0.77379 0.77948 0.84843 1.20608 1.21880 1.21914 0.92454 0.91698 0.93090 0.91381 0.90638 0.90569 0.90576 0.88814 0.88893 0.83611 0.83914 0.82478 0.82565 0.91049 0.87761 0.96135 0.95915 0.78121 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.11 37.16 0.30 -1.28 16 2 C -0.09 -0.96 2.71 -90.58 -0.25 -1.21 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.12 5.62 -26.61 -0.15 -1.27 16 5 C 0.10 0.86 5.87 -3.71 -0.02 0.84 16 6 N -0.61 -7.84 2.97 -172.50 -0.51 -8.35 16 7 C 0.51 7.55 7.78 -10.98 -0.09 7.47 16 8 O -0.50 -10.29 15.91 -14.35 -0.23 -10.52 16 9 C 0.04 0.41 3.58 36.01 0.13 0.54 16 10 O -0.28 -3.64 9.68 -39.36 -0.38 -4.02 16 11 C 0.08 0.90 6.71 -39.07 -0.26 0.64 16 12 C -0.11 -1.01 10.13 -39.13 -0.40 -1.40 16 13 C -0.13 -0.96 10.11 -39.47 -0.40 -1.36 16 14 C 0.06 0.45 11.18 -17.54 -0.20 0.26 16 15 N -0.45 -4.58 10.36 -13.13 -0.14 -4.72 16 16 C 0.01 0.12 10.22 -17.38 -0.18 -0.06 16 17 C 0.12 1.96 5.07 -3.49 -0.02 1.94 16 18 C -0.10 -1.59 2.16 -90.28 -0.20 -1.79 16 19 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 20 C 0.16 3.14 5.18 -4.04 -0.02 3.11 16 21 N -0.73 -18.77 5.38 -59.91 -0.32 -19.09 16 22 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 26 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H 0.06 0.59 4.96 -51.93 -0.26 0.33 16 31 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 36 H 0.08 0.57 6.69 -51.93 -0.35 0.22 16 37 H 0.09 0.71 7.23 -51.93 -0.38 0.34 16 38 H 0.09 0.67 7.48 -51.93 -0.39 0.28 16 39 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.16 1.10 6.32 -52.49 -0.33 0.77 16 43 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 44 H 0.10 2.16 6.23 -51.93 -0.32 1.84 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 47 H 0.38 10.59 6.92 -40.82 -0.28 10.31 16 48 H 0.25 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -36.45 379.07 -9.15 -45.60 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.00 Total: 6.94 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.98 Total: -1.07 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.25 Total: -60.47 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.61 Total: -14.54 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.45 -9.15 -45.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133166236.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.598 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds