Wall clock time and date at job start Tue Mar 31 2020 17:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.45726 * 2 1 4 4 C 1.53034 * 109.45952 * 240.03028 * 2 1 3 5 5 C 1.53192 * 109.31594 * 301.35799 * 4 2 1 6 6 N 1.46931 * 108.77206 * 305.36971 * 5 4 2 7 7 C 1.34780 * 120.62742 * 233.58444 * 6 5 4 8 8 O 1.21283 * 119.99825 * 180.02562 * 7 6 5 9 9 C 1.50702 * 120.00211 * 359.97438 * 7 6 5 10 10 O 1.42900 * 109.47307 * 180.02562 * 9 7 6 11 11 C 1.35908 * 116.99839 * 180.02562 * 10 9 7 12 12 C 1.39145 * 120.47207 * 179.97438 * 11 10 9 13 13 C 1.38537 * 118.37528 * 179.72022 * 12 11 10 14 14 C 1.38250 * 119.22044 * 0.02562 * 13 12 11 15 15 N 1.31848 * 120.88724 * 0.02562 * 14 13 12 16 16 C 1.31843 * 121.78241 * 359.95914 * 15 14 13 17 17 C 1.46919 * 118.73942 * 53.85562 * 6 5 4 18 18 C 1.53038 * 109.44547 * 119.96674 * 2 1 3 19 19 H 1.09007 * 109.49511 * 178.63402 * 18 2 1 20 20 C 1.52995 * 109.49780 * 298.69696 * 18 2 1 21 21 N 1.46507 * 109.46863 * 185.00150 * 20 18 2 22 22 C 1.36939 * 119.99947 * 180.02562 * 21 20 18 23 23 H 1.08006 * 119.99746 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00253 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99565 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00299 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47034 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47168 * 119.99600 * 26 24 22 29 29 H 1.48493 * 109.47101 * 240.00123 * 26 24 22 30 30 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47565 * 299.97346 * 1 2 3 32 32 H 1.09007 * 109.47007 * 59.97139 * 1 2 3 33 33 H 1.09005 * 109.49961 * 181.40577 * 4 2 1 34 34 H 1.09000 * 109.50330 * 61.31219 * 4 2 1 35 35 H 1.08998 * 109.58834 * 185.58597 * 5 4 2 36 36 H 1.08996 * 109.58775 * 65.15362 * 5 4 2 37 37 H 1.09005 * 109.47029 * 59.99762 * 9 7 6 38 38 H 1.09004 * 109.46841 * 299.99877 * 9 7 6 39 39 H 1.07999 * 120.81286 * 359.69753 * 12 11 10 40 40 H 1.08000 * 120.38885 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.55789 * 180.02562 * 14 13 12 42 42 H 1.08002 * 119.65666 * 180.02562 * 16 15 14 43 43 H 1.09006 * 109.58342 * 65.93140 * 17 6 5 44 44 H 1.09005 * 109.58871 * 186.34835 * 17 6 5 45 45 H 1.08994 * 109.47718 * 304.99947 * 20 18 2 46 46 H 1.08998 * 109.47174 * 65.00339 * 20 18 2 47 47 H 0.97000 * 120.00429 * 0.02562 * 21 20 18 48 48 H 0.96999 * 119.99899 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 1.4993 -2.1541 -1.2643 6 7 1.8620 -2.8089 0.0001 7 6 2.5149 -3.9880 0.0001 8 8 2.8082 -4.5186 1.0505 9 6 2.8793 -4.6476 -1.3049 10 8 3.5595 -5.8769 -1.0437 11 6 3.9605 -6.6012 -2.1215 12 6 4.6295 -7.8092 -1.9505 13 6 5.0133 -8.5148 -3.0793 14 6 4.7219 -7.9997 -4.3287 15 7 4.0872 -6.8511 -4.4560 16 6 3.7047 -6.1491 -3.4076 17 6 1.4940 -2.1568 1.2642 18 6 2.0395 -0.7208 1.2502 19 1 3.1293 -0.7426 1.2388 20 6 1.5565 0.0195 2.4989 21 7 2.1417 -0.5999 3.6907 22 6 1.8502 -0.1039 4.9334 23 1 1.1885 0.7437 5.0349 24 6 2.4051 -0.6903 6.0625 25 7 3.2118 -1.7229 5.9387 26 14 2.0069 -0.0141 7.7577 27 1 1.0823 1.1404 7.6254 28 1 1.3615 -1.0734 8.5742 29 1 3.2597 0.4279 8.4211 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 3.1296 -0.7431 -1.2381 34 1 1.6960 -0.1935 -2.1398 35 1 1.9380 -2.7018 -2.0983 36 1 0.4144 -2.1345 -1.3675 37 1 3.5301 -3.9862 -1.8770 38 1 1.9729 -4.8485 -1.8760 39 1 4.8447 -8.1874 -0.9620 40 1 5.5340 -9.4562 -2.9843 41 1 5.0182 -8.5454 -5.2123 42 1 3.1864 -5.2126 -3.5517 43 1 0.4086 -2.1375 1.3629 44 1 1.9291 -2.7063 2.0990 45 1 1.8639 1.0637 2.4441 46 1 0.4695 -0.0367 2.5569 47 1 2.7356 -1.3614 3.5996 48 1 3.5993 -2.1330 6.7278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133166236.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:38 Heat of formation + Delta-G solvation = -45.347775 kcal Electronic energy + Delta-G solvation = -28671.151323 eV Core-core repulsion = 24725.875735 eV Total energy + Delta-G solvation = -3945.275588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.91365 -41.27446 -39.63282 -38.67105 -36.66984 -34.98248 -33.51078 -33.41231 -31.80821 -31.34530 -29.85194 -28.60424 -26.93739 -25.75219 -24.91976 -24.60069 -23.86776 -22.59141 -21.12369 -19.61067 -19.46681 -18.94564 -18.18545 -17.81739 -17.52684 -17.34646 -16.86300 -16.71258 -16.08428 -15.97883 -15.69326 -15.42655 -15.28823 -15.06453 -14.70995 -14.55210 -14.38422 -14.14912 -14.04077 -13.82703 -13.66226 -13.14052 -13.06283 -12.92296 -12.89988 -12.65256 -12.51930 -12.44045 -12.11732 -12.00442 -11.91876 -11.73737 -11.38307 -11.22767 -10.95875 -10.89936 -10.71778 -10.45553 -9.65894 -9.51639 -9.02122 -7.96269 -5.26759 0.12064 0.25156 1.36642 1.43519 1.43640 1.45856 1.55888 2.38831 2.53792 2.80312 3.26370 3.36801 3.51262 3.65209 3.70713 3.80079 3.84148 3.89275 3.98615 4.00174 4.07763 4.09542 4.18561 4.28840 4.38007 4.44455 4.52919 4.57500 4.61320 4.71299 4.78033 4.83286 4.92128 4.96840 5.00938 5.10384 5.13974 5.19525 5.25886 5.31572 5.40493 5.45419 5.48389 5.54633 5.62452 6.09270 6.24485 6.32984 6.93448 7.04083 7.29670 8.06732 8.28214 9.27446 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014352 B = 0.002562 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.472218 B =10924.338742 C =12641.083817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.124 4.124 5 C 0.092 3.908 6 N -0.600 5.600 7 C 0.502 3.498 8 O -0.579 6.579 9 C 0.047 3.953 10 O -0.316 6.316 11 C 0.061 3.939 12 C -0.125 4.125 13 C -0.122 4.122 14 C 0.053 3.947 15 N -0.472 5.472 16 C 0.012 3.988 17 C 0.130 3.870 18 C -0.090 4.090 19 H 0.049 0.951 20 C 0.158 3.842 21 N -0.749 5.749 22 C -0.243 4.243 23 H 0.080 0.920 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.977 3.023 27 H -0.261 1.261 28 H -0.295 1.295 29 H -0.293 1.293 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.174 0.826 41 H 0.187 0.813 42 H 0.182 0.818 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.024 0.976 46 H 0.031 0.969 47 H 0.369 0.631 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 -6.088 -28.866 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.162 4.162 5 C -0.028 4.028 6 N -0.333 5.333 7 C 0.290 3.710 8 O -0.458 6.458 9 C -0.031 4.031 10 O -0.228 6.228 11 C 0.014 3.986 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.104 4.104 15 N -0.182 5.182 16 C -0.145 4.145 17 C 0.007 3.993 18 C -0.109 4.109 19 H 0.068 0.932 20 C 0.032 3.968 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.185 1.185 28 H -0.222 1.222 29 H -0.221 1.221 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.191 0.809 41 H 0.204 0.796 42 H 0.199 0.801 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.049 0.951 47 H 0.201 0.799 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.633 -5.933 -28.834 29.555 hybrid contribution 0.512 -0.303 2.647 2.713 sum -2.122 -6.236 -26.187 27.002 Atomic orbital electron populations 1.21969 0.93971 1.02203 1.02551 1.21076 0.96952 0.99347 0.92568 0.90274 1.21966 1.00948 0.94819 0.98462 1.22321 1.02542 0.94084 0.83857 1.48141 1.56354 1.20063 1.08787 1.20807 0.77731 0.81491 0.91002 1.90803 1.54828 1.64616 1.35598 1.22743 1.00359 0.85342 0.94641 1.86167 1.71939 1.33757 1.30976 1.20368 0.97216 0.93387 0.87612 1.21319 0.99049 0.93082 1.01746 1.22374 0.98701 1.01480 0.91570 1.23236 0.96253 0.92389 0.98523 1.67586 1.09676 1.07466 1.33452 1.23235 1.02831 1.02104 0.86380 1.21488 0.99646 0.92678 0.85467 1.21628 0.99307 0.94089 0.95913 0.93210 1.20889 0.96021 0.94842 0.85069 1.42713 1.56834 1.37516 1.02102 1.19710 1.22160 1.10630 0.84985 0.90201 1.25682 1.00619 0.99049 1.02039 1.69881 1.37242 1.26199 1.29064 0.85017 0.77189 0.77596 0.79624 1.18503 1.22197 1.22055 0.92422 0.93588 0.89942 0.91992 0.86651 0.86564 0.88493 0.85512 0.85052 0.83973 0.80865 0.79633 0.80091 0.90473 0.93570 0.95854 0.95101 0.79915 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.11 71.98 0.58 -2.07 16 2 C -0.08 -1.64 2.71 -10.77 -0.03 -1.67 16 3 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -1.65 5.62 30.67 0.17 -1.48 16 5 C 0.09 1.20 5.87 86.36 0.51 1.70 16 6 N -0.60 -15.25 2.97 -818.07 -2.43 -17.68 16 7 C 0.50 15.18 7.78 87.66 0.68 15.86 16 8 O -0.58 -25.81 15.91 16.00 0.25 -25.56 16 9 C 0.05 0.88 3.58 71.24 0.25 1.14 16 10 O -0.32 -8.28 9.68 -73.48 -0.71 -9.00 16 11 C 0.06 1.29 6.71 22.60 0.15 1.45 16 12 C -0.13 -2.36 10.13 22.56 0.23 -2.13 16 13 C -0.12 -1.58 10.11 22.34 0.23 -1.36 16 14 C 0.05 0.73 11.18 84.69 0.95 1.68 16 15 N -0.47 -8.47 10.36 -195.44 -2.02 -10.49 16 16 C 0.01 0.20 10.22 84.80 0.87 1.07 16 17 C 0.13 4.40 5.07 86.51 0.44 4.84 16 18 C -0.09 -2.86 2.16 -10.57 -0.02 -2.89 16 19 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 20 C 0.16 6.36 5.18 86.38 0.45 6.81 16 21 N -0.75 -40.27 5.38 -343.45 -1.85 -42.11 16 22 C -0.24 -14.16 9.99 84.03 0.84 -13.32 16 23 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 24 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 25 N -0.97 -63.85 13.06 21.65 0.28 -63.57 16 26 Si 0.98 48.17 29.55 68.60 2.03 50.20 16 27 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 30 H 0.06 1.02 4.96 -2.39 -0.01 1.01 16 31 H 0.05 0.99 6.57 -2.39 -0.02 0.97 16 32 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 0.64 5.93 -2.39 -0.01 0.63 16 36 H 0.10 0.95 6.69 -2.39 -0.02 0.94 16 37 H 0.13 1.51 7.23 -2.38 -0.02 1.50 16 38 H 0.13 1.43 7.48 -2.38 -0.02 1.41 16 39 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.18 1.87 6.32 -2.91 -0.02 1.85 16 43 H 0.08 2.46 6.69 -2.38 -0.02 2.45 16 44 H 0.05 2.12 6.23 -2.38 -0.01 2.10 16 45 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.03 1.21 6.73 -2.39 -0.02 1.19 16 47 H 0.37 21.92 6.92 -92.71 -0.64 21.28 16 48 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -87.84 379.07 2.66 -85.18 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.34 Total: 27.92 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.76 Total: 5.11 kcal Atomic # 7 Polarization: -127.84 SS G_CDS: -6.01 Total: -133.85 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.46 Total: -34.55 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -87.84 2.66 -85.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133166236.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.834 kcal (2) G-P(sol) polarization free energy of solvation -87.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds