Wall clock time and date at job start Tue Mar 31 2020 17:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.44730 * 2 1 4 4 C 1.53036 * 109.46209 * 240.02976 * 2 1 3 5 5 C 1.53187 * 109.33909 * 178.63045 * 4 2 1 6 6 N 1.46928 * 108.77623 * 54.61900 * 5 4 2 7 7 C 1.34782 * 120.63146 * 126.41312 * 6 5 4 8 8 O 1.21278 * 119.99668 * 179.97438 * 7 6 5 9 9 C 1.50699 * 119.99844 * 359.97438 * 7 6 5 10 10 O 1.42894 * 109.46828 * 180.02562 * 9 7 6 11 11 C 1.35918 * 117.00176 * 180.02562 * 10 9 7 12 12 C 1.39135 * 120.47463 * 180.02562 * 11 10 9 13 13 C 1.38541 * 118.37092 * 180.02562 * 12 11 10 14 14 C 1.38247 * 119.22282 * 359.97438 * 13 12 11 15 15 N 1.31851 * 120.88666 * 0.02562 * 14 13 12 16 16 C 1.31841 * 121.78204 * 359.69003 * 15 14 13 17 17 C 1.46927 * 118.73615 * 306.39196 * 6 5 4 18 18 C 1.53042 * 109.48686 * 119.94081 * 2 1 3 19 19 H 1.09003 * 109.46473 * 61.40247 * 18 2 1 20 20 C 1.53008 * 109.52401 * 301.34133 * 18 2 1 21 21 N 1.46495 * 109.46899 * 175.10951 * 20 18 2 22 22 C 1.36940 * 119.99774 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00286 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99679 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00300 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99734 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47048 * 89.99760 * 26 24 22 28 28 H 1.48496 * 109.46918 * 209.99509 * 26 24 22 29 29 H 1.48497 * 109.47502 * 329.99812 * 26 24 22 30 30 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47188 * 299.97083 * 1 2 3 32 32 H 1.08996 * 109.47348 * 59.96896 * 1 2 3 33 33 H 1.09002 * 109.49886 * 58.66167 * 4 2 1 34 34 H 1.09000 * 109.49395 * 298.59644 * 4 2 1 35 35 H 1.09000 * 109.58836 * 174.40473 * 5 4 2 36 36 H 1.08999 * 109.58980 * 294.83076 * 5 4 2 37 37 H 1.09000 * 109.46886 * 300.00305 * 9 7 6 38 38 H 1.08997 * 109.47158 * 59.99933 * 9 7 6 39 39 H 1.07995 * 120.81756 * 0.02562 * 12 11 10 40 40 H 1.08005 * 120.38639 * 180.02562 * 13 12 11 41 41 H 1.08002 * 119.55905 * 179.97438 * 14 13 12 42 42 H 1.07994 * 119.66028 * 180.28936 * 16 15 14 43 43 H 1.08999 * 109.58621 * 173.39948 * 17 6 5 44 44 H 1.09003 * 109.58297 * 293.67513 * 17 6 5 45 45 H 1.08998 * 109.46620 * 295.11024 * 20 18 2 46 46 H 1.08996 * 109.46867 * 55.11028 * 20 18 2 47 47 H 0.97004 * 120.00394 * 0.02562 * 21 20 18 48 48 H 0.97001 * 120.00125 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6893 -1.2645 6 7 4.0679 -1.2494 -0.0002 7 6 4.9617 -2.2583 -0.0001 8 8 5.3643 -2.7116 1.0502 9 6 5.4608 -2.8228 -1.3052 10 8 6.3921 -3.8746 -1.0440 11 6 6.9411 -4.4946 -2.1218 12 6 7.8561 -5.5287 -1.9507 13 6 8.3890 -6.1296 -3.0796 14 6 7.9971 -5.6861 -4.3290 15 7 7.1275 -4.7033 -4.4563 16 6 6.5930 -4.1089 -3.4079 17 6 3.5719 -0.6886 1.2640 18 6 2.0405 -0.7201 1.2502 19 1 1.6979 -1.7548 1.2388 20 6 1.5040 -0.0183 2.4995 21 7 1.8962 -0.7750 3.6910 22 6 1.5266 -0.3348 4.9340 23 1 0.9457 0.5699 5.0358 24 6 1.8986 -1.0515 6.0630 25 7 2.6062 -2.1544 5.9389 26 14 1.3939 -0.4515 7.7585 27 1 0.0801 -1.0411 8.1214 28 1 2.4144 -0.8660 8.7543 29 1 1.2857 1.0295 7.7476 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3634 0.5143 -0.8897 33 1 1.6572 -0.2209 -2.1398 34 1 1.6974 -1.7555 -1.2383 35 1 3.9412 -1.2856 -2.0986 36 1 3.9147 0.3400 -1.3680 37 1 4.6198 -3.2161 -1.8762 38 1 5.9521 -2.0358 -1.8773 39 1 8.1438 -5.8550 -0.9623 40 1 9.1016 -6.9356 -2.9846 41 1 8.4094 -6.1504 -5.2126 42 1 5.8804 -3.3103 -3.5519 43 1 3.9422 -1.2844 2.0983 44 1 3.9175 0.3400 1.3679 45 1 1.9173 0.9887 2.5562 46 1 0.4168 0.0376 2.4461 47 1 2.4183 -1.5874 3.5996 48 1 2.8658 -2.6554 6.7278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133166238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:44 Heat of formation + Delta-G solvation = -23.058640 kcal Electronic energy + Delta-G solvation = -28533.002481 eV Core-core repulsion = 24588.693422 eV Total energy + Delta-G solvation = -3944.309059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06952 -40.22469 -38.60819 -37.59719 -35.06065 -33.76029 -32.77181 -31.95464 -30.85996 -29.98784 -29.21237 -27.72364 -25.47749 -24.09779 -23.53554 -23.27556 -22.92268 -21.27779 -20.10756 -19.18666 -18.78228 -17.38785 -17.10922 -16.99010 -16.71412 -16.40786 -15.78209 -15.05857 -14.87255 -14.77330 -14.45126 -14.24390 -14.03217 -13.83179 -13.60286 -13.47964 -13.19163 -13.11073 -12.97806 -12.63981 -12.51937 -12.49799 -11.93224 -11.81559 -11.73792 -11.57079 -11.02335 -10.89946 -10.82601 -10.64097 -10.31728 -10.20208 -10.07656 -9.99487 -9.87629 -9.66823 -9.56552 -8.84448 -8.82374 -8.60552 -6.87245 -5.70267 -3.00215 0.74260 0.93857 2.26177 2.52337 3.25531 3.44345 3.46712 3.51244 3.53740 4.07509 4.15750 4.32849 4.50088 4.54552 4.59723 4.62873 4.66809 4.72776 4.77016 4.83588 5.02093 5.08453 5.16241 5.19411 5.25032 5.57650 5.60079 5.60607 5.63629 5.66452 5.75451 5.75664 5.84996 5.90643 5.98647 6.11405 6.13854 6.20281 6.29260 6.41208 6.51727 6.54342 6.78657 6.83926 6.87333 7.33433 7.57350 7.73836 8.12509 8.47319 9.58265 10.16148 10.49985 11.51962 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.002549 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.222000 B =10980.419175 C =12723.124034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.130 4.130 5 C 0.104 3.896 6 N -0.608 5.608 7 C 0.512 3.488 8 O -0.504 6.504 9 C 0.040 3.960 10 O -0.281 6.281 11 C 0.083 3.917 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.056 3.944 15 N -0.451 5.451 16 C 0.013 3.987 17 C 0.122 3.878 18 C -0.102 4.102 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.105 0.895 44 H 0.069 0.931 45 H 0.018 0.982 46 H 0.028 0.972 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 -1.524 -25.053 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.019 4.019 6 N -0.343 5.343 7 C 0.298 3.702 8 O -0.377 6.377 9 C -0.039 4.039 10 O -0.191 6.191 11 C 0.035 3.965 12 C -0.132 4.132 13 C -0.150 4.150 14 C -0.102 4.102 15 N -0.160 5.160 16 C -0.145 4.145 17 C 0.001 3.999 18 C -0.122 4.122 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.175 0.825 42 H 0.174 0.826 43 H 0.123 0.877 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.454 -1.429 -24.931 25.792 hybrid contribution -0.018 -0.124 1.557 1.562 sum 6.437 -1.554 -23.374 24.293 Atomic orbital electron populations 1.21879 0.94854 1.02012 1.01782 1.21089 0.96078 0.99392 0.93801 0.90971 1.21995 0.94260 1.01822 0.98720 1.21808 0.95237 0.99499 0.85383 1.48085 1.42962 1.35029 1.08243 1.19844 0.80043 0.80288 0.90067 1.90835 1.56047 1.58227 1.32603 1.22626 0.93306 0.90457 0.97469 1.86217 1.56192 1.47455 1.29265 1.20163 0.94735 0.94069 0.87516 1.21034 0.96333 0.94919 1.00903 1.22052 1.00039 1.00320 0.92565 1.22673 0.95689 0.94549 0.97269 1.67516 1.07831 1.07404 1.33231 1.22911 1.02306 1.02091 0.87214 1.21782 0.93763 0.99195 0.85202 1.21725 0.94300 1.00864 0.95264 0.90705 1.20719 0.96861 0.94040 0.85304 1.42421 1.65307 1.29265 1.00802 1.19186 1.27940 1.06438 0.83755 0.91246 1.24762 1.00796 0.97541 0.97830 1.69673 1.42212 1.17292 1.28551 0.86211 0.77600 0.77893 0.84591 1.21785 1.21787 1.20808 0.92753 0.91562 0.93186 0.90629 0.91352 0.90462 0.90810 0.88814 0.88875 0.83609 0.83912 0.82475 0.82563 0.87653 0.91312 0.96378 0.95473 0.78125 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.82 37.16 0.33 -1.31 16 2 C -0.08 -0.96 2.23 -90.58 -0.20 -1.16 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -1.13 5.36 -26.62 -0.14 -1.27 16 5 C 0.10 0.87 6.34 -3.71 -0.02 0.84 16 6 N -0.61 -7.88 2.97 -172.78 -0.51 -8.39 16 7 C 0.51 7.57 7.78 -10.98 -0.09 7.48 16 8 O -0.50 -10.30 15.91 -14.35 -0.23 -10.53 16 9 C 0.04 0.41 3.58 36.01 0.13 0.54 16 10 O -0.28 -3.64 9.68 -39.39 -0.38 -4.02 16 11 C 0.08 0.90 6.71 -39.07 -0.26 0.64 16 12 C -0.11 -1.01 10.13 -39.14 -0.40 -1.40 16 13 C -0.13 -0.96 10.11 -39.47 -0.40 -1.36 16 14 C 0.06 0.45 11.18 -17.54 -0.20 0.26 16 15 N -0.45 -4.58 10.36 -13.13 -0.14 -4.72 16 16 C 0.01 0.12 10.22 -17.37 -0.18 -0.06 16 17 C 0.12 1.97 5.52 -3.72 -0.02 1.95 16 18 C -0.10 -1.59 1.92 -90.50 -0.17 -1.76 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.16 3.10 5.41 -4.04 -0.02 3.08 16 21 N -0.73 -18.75 5.38 -59.91 -0.32 -19.07 16 22 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.04 13.06 55.49 0.72 -28.32 16 26 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.43 5.93 -51.93 -0.31 0.12 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.71 7.22 -51.93 -0.37 0.34 16 38 H 0.09 0.67 7.49 -51.93 -0.39 0.28 16 39 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.16 1.10 6.32 -52.49 -0.33 0.77 16 43 H 0.11 2.18 6.20 -51.93 -0.32 1.86 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 47 H 0.38 10.59 6.89 -40.82 -0.28 10.31 16 48 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -36.44 385.10 -9.24 -45.68 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.27 Total: 6.76 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.89 Total: -1.02 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.25 Total: -60.50 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.61 Total: -14.55 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.44 -9.24 -45.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133166238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.622 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds