Wall clock time and date at job start Tue Mar 31 2020 17:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.44730 * 2 1 4 4 C 1.53036 * 109.46209 * 240.02976 * 2 1 3 5 5 C 1.53187 * 109.33909 * 178.63045 * 4 2 1 6 6 N 1.46928 * 108.77623 * 54.61900 * 5 4 2 7 7 C 1.34782 * 120.63146 * 126.41312 * 6 5 4 8 8 O 1.21278 * 119.99668 * 179.97438 * 7 6 5 9 9 C 1.50699 * 119.99844 * 359.97438 * 7 6 5 10 10 O 1.42894 * 109.46828 * 180.02562 * 9 7 6 11 11 C 1.35918 * 117.00176 * 180.02562 * 10 9 7 12 12 C 1.39135 * 120.47463 * 180.02562 * 11 10 9 13 13 C 1.38541 * 118.37092 * 180.02562 * 12 11 10 14 14 C 1.38247 * 119.22282 * 359.97438 * 13 12 11 15 15 N 1.31851 * 120.88666 * 0.02562 * 14 13 12 16 16 C 1.31841 * 121.78204 * 359.69003 * 15 14 13 17 17 C 1.46927 * 118.73615 * 306.39196 * 6 5 4 18 18 C 1.53042 * 109.48686 * 119.94081 * 2 1 3 19 19 H 1.09003 * 109.46473 * 61.40247 * 18 2 1 20 20 C 1.53008 * 109.52401 * 301.34133 * 18 2 1 21 21 N 1.46495 * 109.46899 * 175.10951 * 20 18 2 22 22 C 1.36940 * 119.99774 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00286 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99679 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00300 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99734 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47048 * 89.99760 * 26 24 22 28 28 H 1.48496 * 109.46918 * 209.99509 * 26 24 22 29 29 H 1.48497 * 109.47502 * 329.99812 * 26 24 22 30 30 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47188 * 299.97083 * 1 2 3 32 32 H 1.08996 * 109.47348 * 59.96896 * 1 2 3 33 33 H 1.09002 * 109.49886 * 58.66167 * 4 2 1 34 34 H 1.09000 * 109.49395 * 298.59644 * 4 2 1 35 35 H 1.09000 * 109.58836 * 174.40473 * 5 4 2 36 36 H 1.08999 * 109.58980 * 294.83076 * 5 4 2 37 37 H 1.09000 * 109.46886 * 300.00305 * 9 7 6 38 38 H 1.08997 * 109.47158 * 59.99933 * 9 7 6 39 39 H 1.07995 * 120.81756 * 0.02562 * 12 11 10 40 40 H 1.08005 * 120.38639 * 180.02562 * 13 12 11 41 41 H 1.08002 * 119.55905 * 179.97438 * 14 13 12 42 42 H 1.07994 * 119.66028 * 180.28936 * 16 15 14 43 43 H 1.08999 * 109.58621 * 173.39948 * 17 6 5 44 44 H 1.09003 * 109.58297 * 293.67513 * 17 6 5 45 45 H 1.08998 * 109.46620 * 295.11024 * 20 18 2 46 46 H 1.08996 * 109.46867 * 55.11028 * 20 18 2 47 47 H 0.97004 * 120.00394 * 0.02562 * 21 20 18 48 48 H 0.97001 * 120.00125 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6893 -1.2645 6 7 4.0679 -1.2494 -0.0002 7 6 4.9617 -2.2583 -0.0001 8 8 5.3643 -2.7116 1.0502 9 6 5.4608 -2.8228 -1.3052 10 8 6.3921 -3.8746 -1.0440 11 6 6.9411 -4.4946 -2.1218 12 6 7.8561 -5.5287 -1.9507 13 6 8.3890 -6.1296 -3.0796 14 6 7.9971 -5.6861 -4.3290 15 7 7.1275 -4.7033 -4.4563 16 6 6.5930 -4.1089 -3.4079 17 6 3.5719 -0.6886 1.2640 18 6 2.0405 -0.7201 1.2502 19 1 1.6979 -1.7548 1.2388 20 6 1.5040 -0.0183 2.4995 21 7 1.8962 -0.7750 3.6910 22 6 1.5266 -0.3348 4.9340 23 1 0.9457 0.5699 5.0358 24 6 1.8986 -1.0515 6.0630 25 7 2.6062 -2.1544 5.9389 26 14 1.3939 -0.4515 7.7585 27 1 0.0801 -1.0411 8.1214 28 1 2.4144 -0.8660 8.7543 29 1 1.2857 1.0295 7.7476 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3634 0.5143 -0.8897 33 1 1.6572 -0.2209 -2.1398 34 1 1.6974 -1.7555 -1.2383 35 1 3.9412 -1.2856 -2.0986 36 1 3.9147 0.3400 -1.3680 37 1 4.6198 -3.2161 -1.8762 38 1 5.9521 -2.0358 -1.8773 39 1 8.1438 -5.8550 -0.9623 40 1 9.1016 -6.9356 -2.9846 41 1 8.4094 -6.1504 -5.2126 42 1 5.8804 -3.3103 -3.5519 43 1 3.9422 -1.2844 2.0983 44 1 3.9175 0.3400 1.3679 45 1 1.9173 0.9887 2.5562 46 1 0.4168 0.0376 2.4461 47 1 2.4183 -1.5874 3.5996 48 1 2.8658 -2.6554 6.7278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133166238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:43 Heat of formation + Delta-G solvation = -48.191135 kcal Electronic energy + Delta-G solvation = -28534.092308 eV Core-core repulsion = 24588.693422 eV Total energy + Delta-G solvation = -3945.398885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88240 -41.19404 -39.54302 -38.65419 -36.65791 -35.14841 -33.56085 -33.40943 -31.82165 -31.34432 -30.11534 -28.80902 -27.04349 -25.07224 -24.75913 -24.31550 -23.75424 -22.59447 -21.29348 -20.19878 -19.55294 -19.15787 -18.19135 -17.80282 -17.56658 -17.30026 -16.80463 -16.75856 -16.05212 -15.61801 -15.53130 -15.34130 -15.30177 -15.11471 -14.67555 -14.40067 -14.31197 -14.22671 -14.06244 -13.97728 -13.66598 -13.16626 -13.06120 -13.03654 -12.77476 -12.65582 -12.62454 -12.51397 -12.19329 -11.99990 -11.91913 -11.78815 -11.34654 -11.18833 -10.98395 -10.84770 -10.71841 -10.45463 -9.72832 -9.51807 -9.01121 -7.95794 -5.26197 0.12011 0.25111 1.36212 1.43442 1.43625 1.46773 1.55246 2.38666 2.54125 2.80267 3.26227 3.37118 3.51209 3.64832 3.69577 3.79576 3.83582 3.89321 3.98621 4.00147 4.04897 4.09552 4.19224 4.28043 4.38756 4.44957 4.57329 4.60214 4.61298 4.74531 4.79452 4.83704 4.95444 4.96555 4.98197 5.08559 5.13935 5.14604 5.24668 5.27293 5.42185 5.47425 5.49761 5.55153 5.59411 6.09107 6.24803 6.32578 6.93397 7.03731 7.30042 8.07350 8.28730 9.27744 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.002549 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.222000 B =10980.419175 C =12723.124034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.086 0.914 4 C -0.124 4.124 5 C 0.094 3.906 6 N -0.601 5.601 7 C 0.502 3.498 8 O -0.580 6.580 9 C 0.047 3.953 10 O -0.317 6.317 11 C 0.061 3.939 12 C -0.125 4.125 13 C -0.122 4.122 14 C 0.053 3.947 15 N -0.472 5.472 16 C 0.012 3.988 17 C 0.128 3.872 18 C -0.088 4.088 19 H 0.049 0.951 20 C 0.156 3.844 21 N -0.749 5.749 22 C -0.244 4.244 23 H 0.080 0.920 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.977 3.023 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.265 1.265 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.174 0.826 41 H 0.187 0.813 42 H 0.182 0.818 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.034 0.966 47 H 0.369 0.631 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -0.088 -28.851 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.104 0.896 4 C -0.162 4.162 5 C -0.026 4.026 6 N -0.335 5.335 7 C 0.290 3.710 8 O -0.458 6.458 9 C -0.031 4.031 10 O -0.229 6.229 11 C 0.014 3.986 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.104 4.104 15 N -0.182 5.182 16 C -0.145 4.145 17 C 0.005 3.995 18 C -0.108 4.108 19 H 0.068 0.932 20 C 0.029 3.971 21 N -0.391 5.391 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.212 1.212 28 H -0.225 1.225 29 H -0.190 1.190 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.191 0.809 41 H 0.204 0.796 42 H 0.199 0.801 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.201 0.799 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.869 0.074 -28.815 29.407 hybrid contribution 0.152 -0.560 2.645 2.708 sum 6.021 -0.486 -26.170 26.858 Atomic orbital electron populations 1.21858 0.94437 1.01633 1.02387 1.21100 0.96355 0.99768 0.92583 0.89595 1.22003 0.94292 1.01460 0.98446 1.22294 0.95134 1.01358 0.83820 1.48163 1.42131 1.34359 1.08818 1.20812 0.79387 0.79808 0.91014 1.90801 1.58777 1.60663 1.35605 1.22739 0.94504 0.91211 0.94617 1.86167 1.57172 1.48531 1.30986 1.20370 0.95720 0.94887 0.87610 1.21318 0.96795 0.95338 1.01748 1.22375 0.99774 1.00407 0.91569 1.23237 0.94814 0.93825 0.98524 1.67587 1.08774 1.08365 1.33453 1.23237 1.02458 1.02472 0.86376 1.21403 0.94130 0.98366 0.85584 1.21567 0.93696 0.99571 0.95922 0.93238 1.20939 0.97200 0.93905 0.85017 1.42699 1.65095 1.29267 1.02077 1.19670 1.26665 1.06226 0.84982 0.90213 1.25679 1.01630 0.98028 1.02035 1.69874 1.44358 1.19031 1.29142 0.85085 0.76864 0.78159 0.79331 1.21241 1.22468 1.18981 0.93654 0.93410 0.90082 0.86631 0.92105 0.86483 0.88528 0.85507 0.85020 0.83973 0.80864 0.79630 0.80081 0.93408 0.90713 0.95811 0.94842 0.79930 0.94168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.82 71.98 0.63 -2.25 16 2 C -0.08 -1.60 2.23 -10.77 -0.02 -1.63 16 3 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.12 -1.65 5.36 30.67 0.16 -1.48 16 5 C 0.09 1.20 6.34 86.36 0.55 1.75 16 6 N -0.60 -15.30 2.97 -818.93 -2.43 -17.74 16 7 C 0.50 15.20 7.78 87.66 0.68 15.88 16 8 O -0.58 -25.85 15.91 16.01 0.25 -25.59 16 9 C 0.05 0.88 3.58 71.24 0.25 1.14 16 10 O -0.32 -8.29 9.68 -73.59 -0.71 -9.01 16 11 C 0.06 1.29 6.71 22.60 0.15 1.45 16 12 C -0.13 -2.36 10.13 22.56 0.23 -2.14 16 13 C -0.12 -1.58 10.11 22.34 0.23 -1.36 16 14 C 0.05 0.73 11.18 84.69 0.95 1.68 16 15 N -0.47 -8.46 10.36 -195.44 -2.02 -10.49 16 16 C 0.01 0.20 10.22 84.80 0.87 1.07 16 17 C 0.13 4.34 5.52 86.36 0.48 4.82 16 18 C -0.09 -2.80 1.92 -10.72 -0.02 -2.82 16 19 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 20 C 0.16 6.24 5.41 86.38 0.47 6.71 16 21 N -0.75 -40.21 5.38 -343.46 -1.85 -42.05 16 22 C -0.24 -14.19 9.99 84.03 0.84 -13.35 16 23 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 24 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 25 N -0.97 -63.88 13.06 21.65 0.28 -63.60 16 26 Si 0.98 48.15 29.55 68.60 2.03 50.18 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.11 6.30 -2.39 -0.02 1.10 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 0.62 5.93 -2.39 -0.01 0.61 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.13 1.51 7.22 -2.39 -0.02 1.49 16 38 H 0.13 1.43 7.49 -2.39 -0.02 1.41 16 39 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.18 1.87 6.32 -2.91 -0.02 1.85 16 43 H 0.05 2.19 6.20 -2.39 -0.01 2.18 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.03 1.32 6.15 -2.39 -0.01 1.31 16 47 H 0.37 21.90 6.89 -92.71 -0.64 21.26 16 48 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -87.92 385.10 2.79 -85.13 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.33 Total: 28.19 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.91 Total: 4.98 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -6.02 Total: -133.88 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.46 Total: -34.60 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -87.92 2.79 -85.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133166238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.939 kcal (2) G-P(sol) polarization free energy of solvation -87.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds