Wall clock time and date at job start Tue Mar 31 2020 17:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.44762 * 2 1 4 4 C 1.53035 * 109.46041 * 119.96441 * 2 1 3 5 5 C 1.53189 * 109.31432 * 181.38178 * 4 2 1 6 6 N 1.46927 * 108.77827 * 305.36773 * 5 4 2 7 7 C 1.34772 * 120.63167 * 233.62711 * 6 5 4 8 8 O 1.21612 * 119.99926 * 172.84681 * 7 6 5 9 9 C 1.47415 * 120.00054 * 352.84159 * 7 6 5 10 10 N 1.36068 * 126.45067 * 353.22752 * 9 7 6 11 11 C 1.29938 * 108.47915 * 179.82586 * 10 9 7 12 12 O 1.34056 * 109.24220 * 0.43591 * 11 10 9 13 13 C 1.34255 * 108.22476 * 359.72765 * 12 11 10 14 14 C 1.50699 * 126.52383 * 179.97438 * 13 12 11 15 15 C 1.53006 * 117.49628 * 8.77681 * 14 13 12 16 16 C 1.53004 * 117.50051 * 300.11826 * 14 13 12 17 17 C 1.46927 * 118.73542 * 53.60973 * 6 5 4 18 18 C 1.53047 * 109.46079 * 240.03369 * 2 1 3 19 19 H 1.08995 * 109.49599 * 298.57088 * 18 2 1 20 20 C 1.52998 * 109.49408 * 58.66462 * 18 2 1 21 21 N 1.46503 * 109.47026 * 184.83970 * 20 18 2 22 22 C 1.36931 * 120.00134 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00325 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00129 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00041 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00255 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47333 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47449 * 119.99871 * 26 24 22 29 29 H 1.48505 * 109.47361 * 240.00151 * 26 24 22 30 30 H 1.09001 * 109.47281 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47012 * 299.96780 * 1 2 3 32 32 H 1.09007 * 109.47208 * 59.96463 * 1 2 3 33 33 H 1.08999 * 109.49775 * 61.43823 * 4 2 1 34 34 H 1.08994 * 109.50039 * 301.33642 * 4 2 1 35 35 H 1.09000 * 109.59136 * 185.57644 * 5 4 2 36 36 H 1.09008 * 109.70093 * 65.22759 * 5 4 2 37 37 H 1.08003 * 125.37745 * 180.17083 * 11 10 9 38 38 H 1.08997 * 115.54917 * 154.44154 * 14 13 12 39 39 H 1.08991 * 117.49943 * 359.97438 * 15 14 13 40 40 H 1.09001 * 117.49737 * 145.01731 * 15 14 13 41 41 H 1.09004 * 117.49493 * 214.97892 * 16 14 13 42 42 H 1.09001 * 117.49846 * 359.97438 * 16 14 13 43 43 H 1.08999 * 109.58276 * 186.60639 * 17 6 5 44 44 H 1.08998 * 109.59391 * 66.17823 * 17 6 5 45 45 H 1.09006 * 109.47158 * 304.83677 * 20 18 2 46 46 H 1.08997 * 109.47516 * 64.83749 * 20 18 2 47 47 H 0.97002 * 119.99552 * 0.02562 * 21 20 18 48 48 H 0.96999 * 120.00467 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6886 1.2642 6 7 4.0678 -1.2489 0.0000 7 6 4.9613 -2.2578 0.0000 8 8 5.2664 -2.7998 -1.0451 9 6 5.5689 -2.7043 1.2667 10 7 5.4246 -2.1148 2.4845 11 6 6.1060 -2.7969 3.3556 12 8 6.7087 -3.8235 2.7393 13 6 6.3845 -3.7804 1.4372 14 6 6.8379 -4.7405 0.3677 15 6 7.5872 -5.9964 0.8175 16 6 8.3427 -4.8626 0.1198 17 6 3.5713 -0.6885 -1.2643 18 6 2.0398 -0.7208 -1.2501 19 1 1.6977 -1.7556 -1.2384 20 6 1.5028 -0.0188 -2.4990 21 7 1.8949 -0.7750 -3.6909 22 6 1.5240 -0.3352 -4.9335 23 1 0.9420 0.5688 -5.0349 24 6 1.8961 -1.0514 -6.0629 25 7 2.6058 -2.1530 -5.9395 26 14 1.3895 -0.4519 -7.7580 27 1 0.6021 0.8002 -7.6254 28 1 2.6026 -0.1903 -8.5736 29 1 0.5604 -1.4893 -8.4226 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8897 33 1 1.6978 -1.7556 1.2383 34 1 1.6572 -0.2207 2.1398 35 1 3.9416 -1.2845 2.0984 36 1 3.9163 0.3401 1.3685 37 1 6.1789 -2.5699 4.4090 38 1 6.1768 -4.8305 -0.4942 39 1 7.7526 -6.1280 1.8867 40 1 7.4194 -6.9125 0.2511 41 1 8.6716 -5.0332 -0.9054 42 1 9.0048 -4.2481 0.7299 43 1 3.9416 -1.2845 -2.0984 44 1 3.9142 0.3410 -1.3674 45 1 0.4154 0.0366 -2.4454 46 1 1.9155 0.9884 -2.5556 47 1 2.4168 -1.5876 -3.5998 48 1 2.8655 -2.6537 -6.7286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133217766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:53 Heat of formation + Delta-G solvation = 9.481225 kcal Electronic energy + Delta-G solvation = -29384.258069 eV Core-core repulsion = 25441.360045 eV Total energy + Delta-G solvation = -3942.898024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.54754 -41.25217 -39.21844 -38.19925 -36.68634 -35.96280 -34.93845 -33.53314 -31.63394 -31.26040 -29.33997 -27.57876 -25.71609 -24.89481 -24.74710 -23.76440 -23.33815 -22.61481 -22.14255 -21.15099 -20.44859 -19.17633 -18.54496 -17.89141 -17.72137 -17.13237 -16.75114 -16.52145 -16.27074 -15.93607 -15.60846 -15.47282 -15.25593 -15.10987 -14.66057 -14.43805 -14.32884 -14.14245 -14.06422 -13.45806 -13.14806 -13.05100 -12.83468 -12.69139 -12.64464 -12.53410 -12.47152 -12.18226 -12.14862 -12.07613 -11.91199 -11.87729 -11.65225 -11.58624 -11.28279 -11.20595 -10.96664 -10.59808 -9.95450 -9.58015 -9.00140 -7.94292 -5.24852 -0.04753 1.01310 1.42956 1.44882 1.47057 1.57158 1.91782 2.13051 2.55210 2.78966 3.01188 3.30018 3.38456 3.55632 3.67663 3.78519 3.83502 3.87790 3.93305 4.05873 4.09212 4.19111 4.29622 4.37421 4.45786 4.55503 4.59519 4.62331 4.65563 4.74499 4.78524 4.85417 4.90378 4.93636 4.95305 5.04987 5.07764 5.10779 5.12865 5.21269 5.22620 5.35588 5.44197 5.48363 5.55688 5.68265 6.24976 6.26262 6.49080 7.02454 7.31476 8.07583 8.30558 9.29482 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.003354 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.011832 B = 8345.156504 C =10442.667172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.118 4.118 5 C 0.078 3.922 6 N -0.593 5.593 7 C 0.583 3.417 8 O -0.573 6.573 9 C -0.089 4.089 10 N -0.481 5.481 11 C 0.203 3.797 12 O -0.192 6.192 13 C 0.078 3.922 14 C -0.118 4.118 15 C -0.142 4.142 16 C -0.152 4.152 17 C 0.127 3.873 18 C -0.086 4.086 19 H 0.048 0.952 20 C 0.159 3.841 21 N -0.748 5.748 22 C -0.245 4.245 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.977 3.023 27 H -0.262 1.262 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.313 0.687 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.024 0.976 47 H 0.370 0.630 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 -1.440 27.563 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.156 4.156 5 C -0.043 4.043 6 N -0.323 5.323 7 C 0.371 3.629 8 O -0.453 6.453 9 C -0.207 4.207 10 N -0.210 5.210 11 C -0.024 4.024 12 O -0.079 6.079 13 C 0.021 3.979 14 C -0.136 4.136 15 C -0.179 4.179 16 C -0.188 4.188 17 C 0.005 3.995 18 C -0.106 4.106 19 H 0.066 0.934 20 C 0.032 3.968 21 N -0.391 5.391 22 C -0.376 4.376 23 H 0.097 0.903 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.805 3.195 27 H -0.186 1.186 28 H -0.221 1.221 29 H -0.220 1.220 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.092 0.908 37 H 0.328 0.672 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.202 0.798 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.526 -1.022 27.053 28.099 hybrid contribution 0.209 -0.610 -1.744 1.860 sum 7.735 -1.632 25.309 26.515 Atomic orbital electron populations 1.21848 0.94072 1.01653 1.02501 1.21109 0.96599 0.99518 0.92613 0.89904 1.21954 0.94585 1.00630 0.98445 1.22840 0.94422 1.00997 0.86056 1.48020 1.41520 1.34046 1.08738 1.17343 0.79209 0.79675 0.86633 1.90819 1.64115 1.56833 1.33509 1.21058 1.07137 0.98982 0.93483 1.70455 1.22621 1.29157 0.98753 1.29469 0.89538 0.81602 1.01775 1.84360 1.58668 1.46439 1.18454 1.22595 0.95903 0.96554 0.82888 1.20664 0.98145 0.98724 0.96106 1.23220 1.00016 0.92028 1.02640 1.23177 0.90261 1.01931 1.03478 1.21466 0.94401 0.98209 0.85460 1.21542 0.93698 0.99460 0.95915 0.93360 1.20903 0.97198 0.93840 0.84857 1.42688 1.65102 1.29266 1.02010 1.19710 1.26689 1.06297 0.84946 0.90276 1.25655 1.01562 0.97981 1.01913 1.69881 1.44266 1.19073 1.29044 0.85023 0.77092 0.77693 0.79645 1.18633 1.22107 1.21994 0.93651 0.90176 0.92951 0.93086 0.87363 0.83941 0.90821 0.67209 0.85833 0.86583 0.86247 0.87016 0.87588 0.92628 0.91065 0.94713 0.95818 0.79841 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.81 71.98 0.63 -2.74 16 2 C -0.08 -2.05 2.23 -10.77 -0.02 -2.07 16 3 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.12 -2.58 5.36 30.67 0.16 -2.41 16 5 C 0.08 1.89 6.10 86.36 0.53 2.42 16 6 N -0.59 -19.88 2.97 -822.79 -2.45 -22.33 16 7 C 0.58 21.50 7.67 86.66 0.66 22.16 16 8 O -0.57 -25.84 14.38 -4.07 -0.06 -25.90 16 9 C -0.09 -2.53 6.67 40.41 0.27 -2.26 16 10 N -0.48 -9.91 7.83 -305.14 -2.39 -12.30 16 11 C 0.20 2.40 13.19 130.52 1.72 4.12 16 12 O -0.19 -3.24 10.50 0.34 0.00 -3.24 16 13 C 0.08 1.91 6.90 25.19 0.17 2.08 16 14 C -0.12 -2.86 5.56 -11.54 -0.06 -2.93 16 15 C -0.14 -2.27 10.18 30.62 0.31 -1.95 16 16 C -0.15 -2.83 10.24 30.62 0.31 -2.51 16 17 C 0.13 4.91 5.53 86.36 0.48 5.39 16 18 C -0.09 -3.12 1.92 -10.71 -0.02 -3.14 16 19 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 20 C 0.16 6.74 5.41 86.38 0.47 7.20 16 21 N -0.75 -41.21 5.38 -343.45 -1.85 -43.05 16 22 C -0.24 -14.46 9.99 84.03 0.84 -13.62 16 23 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 24 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 25 N -0.97 -63.79 13.06 21.65 0.28 -63.50 16 26 Si 0.98 48.39 29.55 68.60 2.03 50.42 16 27 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.36 6.30 -2.38 -0.02 1.34 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.14 3.23 4.11 -18.81 -0.08 3.15 16 36 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.31 -0.66 8.06 -2.91 -0.02 -0.68 16 38 H 0.12 3.83 6.78 -2.39 -0.02 3.81 16 39 H 0.12 1.48 8.00 -2.39 -0.02 1.46 16 40 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 2.69 6.20 -2.39 -0.01 2.68 16 44 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.04 1.45 6.15 -2.38 -0.01 1.43 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 47 H 0.37 22.37 6.89 -92.71 -0.64 21.73 16 48 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -82.01 382.59 2.77 -79.24 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.27 Total: 35.28 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 6.92 Total: 5.39 kcal Atomic # 7 Polarization: -134.79 SS G_CDS: -6.40 Total: -141.18 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.05 Total: -29.13 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -82.01 2.77 -79.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.718 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds