Wall clock time and date at job start Tue Mar 31 2020 17:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.44966 * 2 1 4 4 C 1.53035 * 109.45975 * 240.03500 * 2 1 3 5 5 C 1.53194 * 109.31275 * 178.61492 * 4 2 1 6 6 N 1.46924 * 108.77614 * 54.63707 * 5 4 2 7 7 C 1.34770 * 120.63277 * 126.36971 * 6 5 4 8 8 O 1.21610 * 119.99982 * 173.96199 * 7 6 5 9 9 C 1.47422 * 120.00171 * 353.96340 * 7 6 5 10 10 N 1.36062 * 126.44765 * 354.11585 * 9 7 6 11 11 C 1.29931 * 108.47878 * 179.97438 * 10 9 7 12 12 O 1.34054 * 109.24420 * 359.97438 * 11 10 9 13 13 C 1.34258 * 108.22378 * 359.77066 * 12 11 10 14 14 C 1.50699 * 126.52283 * 180.22555 * 13 12 11 15 15 C 1.52996 * 117.50145 * 8.78732 * 14 13 12 16 16 C 1.52994 * 117.50196 * 300.16180 * 14 13 12 17 17 C 1.46927 * 118.73566 * 306.39131 * 6 5 4 18 18 C 1.53039 * 109.46114 * 119.96606 * 2 1 3 19 19 H 1.09002 * 109.50032 * 61.43352 * 18 2 1 20 20 C 1.53005 * 109.52608 * 301.35627 * 18 2 1 21 21 N 1.46500 * 109.47306 * 175.08135 * 20 18 2 22 22 C 1.36936 * 119.99876 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00222 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00222 * 179.97438 * 22 21 20 25 25 N 1.31629 * 119.99646 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00444 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47121 * 60.00253 * 26 24 22 28 28 H 1.48497 * 109.47326 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47173 * 300.00298 * 26 24 22 30 30 H 1.08996 * 109.46902 * 300.03221 * 1 2 3 31 31 H 1.08995 * 109.46779 * 60.03151 * 1 2 3 32 32 H 1.09003 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.50190 * 58.66404 * 4 2 1 34 34 H 1.09009 * 109.52422 * 298.57892 * 4 2 1 35 35 H 1.08994 * 109.58524 * 294.84329 * 5 4 2 36 36 H 1.09000 * 109.70288 * 174.49009 * 5 4 2 37 37 H 1.07999 * 125.37878 * 179.97438 * 11 10 9 38 38 H 1.08998 * 115.54635 * 154.49573 * 14 13 12 39 39 H 1.09001 * 117.49872 * 0.02562 * 15 14 13 40 40 H 1.09000 * 117.49904 * 145.01892 * 15 14 13 41 41 H 1.09000 * 117.49998 * 214.97962 * 16 14 13 42 42 H 1.09005 * 117.49941 * 0.02562 * 16 14 13 43 43 H 1.09002 * 109.58457 * 293.82192 * 17 6 5 44 44 H 1.08999 * 109.70136 * 173.46827 * 17 6 5 45 45 H 1.09002 * 109.46234 * 295.07913 * 20 18 2 46 46 H 1.08994 * 109.47130 * 55.07259 * 20 18 2 47 47 H 0.96997 * 120.00168 * 359.97438 * 21 20 18 48 48 H 0.96998 * 119.99554 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9614 -2.2578 0.0000 8 8 5.4476 -2.6394 1.0473 9 6 5.3494 -2.8988 -1.2696 10 7 4.8107 -2.6564 -2.4953 11 6 5.4116 -3.4109 -3.3658 12 8 6.3404 -4.1503 -2.7433 13 6 6.3184 -3.8395 -1.4373 14 6 7.1969 -4.4241 -0.3614 15 6 8.3549 -5.3205 -0.8044 16 6 7.1247 -5.9353 -0.1340 17 6 3.5714 -0.6886 1.2642 18 6 2.0399 -0.7207 1.2501 19 1 1.6979 -1.7556 1.2383 20 6 1.5028 -0.0196 2.4995 21 7 1.8938 -0.7773 3.6908 22 6 1.5234 -0.3379 4.9337 23 1 0.9428 0.5671 5.0358 24 6 1.8934 -1.0560 6.0626 25 7 2.6006 -2.1592 5.9382 26 14 1.3876 -0.4570 7.7580 27 1 -0.0939 -0.3975 7.8404 28 1 1.9039 -1.3935 8.7883 29 1 1.9513 0.8966 7.9933 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2207 -2.1399 34 1 1.6978 -1.7557 -1.2388 35 1 3.9143 0.3409 -1.3674 36 1 3.9437 -1.2830 -2.0985 37 1 5.1968 -3.4380 -4.4239 38 1 7.3556 -3.7909 0.5114 39 1 8.4817 -5.4871 -1.8741 40 1 9.2759 -5.2770 -0.2230 41 1 7.2364 -6.2964 0.8884 42 1 6.4421 -6.5069 -0.7629 43 1 3.9143 0.3409 1.3673 44 1 3.9417 -1.2825 2.0999 45 1 1.9165 0.9872 2.5571 46 1 0.4156 0.0369 2.4453 47 1 2.4149 -1.5902 3.5992 48 1 2.8595 -2.6608 6.7270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133217767.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:56 Heat of formation + Delta-G solvation = 35.155442 kcal Electronic energy + Delta-G solvation = -29418.930245 eV Core-core repulsion = 25477.145539 eV Total energy + Delta-G solvation = -3941.784707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.74092 -39.95049 -37.91159 -37.37607 -35.33766 -34.62592 -33.52532 -31.75853 -30.56487 -29.67759 -28.15415 -25.90995 -24.43744 -24.01770 -23.09145 -22.77494 -22.51370 -21.24630 -21.10221 -19.96001 -19.26405 -17.61862 -17.04132 -16.97348 -16.68677 -15.99686 -15.61140 -15.15995 -14.94123 -14.76209 -14.31701 -13.99595 -13.82446 -13.72504 -13.44267 -13.20068 -12.98300 -12.61677 -12.58111 -12.40404 -11.90684 -11.84841 -11.69131 -11.58452 -11.43981 -11.27222 -10.98748 -10.89986 -10.79191 -10.70171 -10.61953 -10.36639 -10.10530 -10.03825 -9.94679 -9.57447 -9.37638 -9.01277 -8.77949 -8.32719 -6.81606 -5.65897 -2.95119 0.88149 1.82122 2.24079 3.10837 3.28950 3.50114 3.53954 3.55522 3.59625 3.76975 4.13483 4.48231 4.63625 4.65282 4.66598 4.87911 4.96653 5.06969 5.08350 5.27970 5.33519 5.34514 5.37531 5.46555 5.53258 5.62890 5.67123 5.75425 5.80714 5.81393 5.84615 5.91547 5.93862 6.06243 6.11264 6.16976 6.27419 6.33090 6.43089 6.43381 6.56982 6.65869 6.83488 6.91498 6.99380 7.18491 7.63738 7.77680 8.30913 8.52105 9.62846 10.21683 10.56105 11.56474 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.003387 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.621995 B = 8265.782510 C =10364.937121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.121 4.121 5 C 0.063 3.937 6 N -0.591 5.591 7 C 0.594 3.406 8 O -0.525 6.525 9 C -0.059 4.059 10 N -0.457 5.457 11 C 0.172 3.828 12 O -0.198 6.198 13 C 0.074 3.926 14 C -0.084 4.084 15 C -0.170 4.170 16 C -0.154 4.154 17 C 0.120 3.880 18 C -0.100 4.100 19 H 0.073 0.927 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.147 0.853 37 H 0.255 0.745 38 H 0.156 0.844 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.018 0.982 46 H 0.027 0.973 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -3.211 -24.168 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.159 4.159 5 C -0.059 4.059 6 N -0.322 5.322 7 C 0.381 3.619 8 O -0.402 6.402 9 C -0.178 4.178 10 N -0.187 5.187 11 C -0.055 4.055 12 O -0.085 6.085 13 C 0.018 3.982 14 C -0.102 4.102 15 C -0.207 4.207 16 C -0.191 4.191 17 C -0.001 4.001 18 C -0.120 4.120 19 H 0.091 0.909 20 C 0.031 3.969 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.271 0.729 38 H 0.174 0.826 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.291 -2.911 -23.605 24.876 hybrid contribution 0.095 -0.204 0.827 0.857 sum 7.385 -3.114 -22.777 24.147 Atomic orbital electron populations 1.21878 0.95163 1.01836 1.01539 1.21128 0.95789 0.99334 0.94306 0.91278 1.21884 0.95216 1.01060 0.97733 1.22879 0.94649 1.00075 0.88339 1.47912 1.41901 1.33962 1.08439 1.16778 0.79741 0.79667 0.85749 1.90844 1.54178 1.63906 1.31234 1.21513 1.00012 1.02899 0.93388 1.70310 1.26017 1.22839 0.99486 1.28161 0.87271 0.89585 1.00486 1.84323 1.50129 1.54541 1.19481 1.22622 0.97588 0.96319 0.81702 1.20778 0.98677 0.94771 0.96021 1.23096 0.93194 1.02606 1.01823 1.23083 1.00336 0.92555 1.03156 1.21770 0.93749 0.99161 0.85449 1.21698 0.94374 1.00703 0.95199 0.90906 1.20725 0.96800 0.94030 0.85356 1.42412 1.65347 1.29178 1.00798 1.19165 1.27866 1.06319 0.83839 0.91330 1.24741 1.00898 0.97535 0.97738 1.69672 1.42389 1.17260 1.28550 0.86291 0.77955 0.77634 0.84426 1.21371 1.21733 1.21333 0.91766 0.93307 0.92873 0.91277 0.91851 0.92615 0.83676 0.72945 0.82614 0.88225 0.87460 0.87016 0.88442 0.91599 0.87878 0.96412 0.95526 0.78147 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.81 37.16 0.33 -1.57 16 2 C -0.09 -1.19 2.23 -90.58 -0.20 -1.39 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.12 -1.48 5.36 -26.61 -0.14 -1.62 16 5 C 0.06 0.82 6.33 -3.71 -0.02 0.80 16 6 N -0.59 -9.56 2.97 -174.04 -0.52 -10.08 16 7 C 0.59 10.24 7.68 -12.52 -0.10 10.14 16 8 O -0.53 -10.61 14.40 5.27 0.08 -10.54 16 9 C -0.06 -0.82 6.73 -83.02 -0.56 -1.38 16 10 N -0.46 -5.16 7.73 -11.48 -0.09 -5.25 16 11 C 0.17 1.33 13.19 51.96 0.69 2.02 16 12 O -0.20 -1.92 10.50 6.50 0.07 -1.85 16 13 C 0.07 0.90 6.90 -35.08 -0.24 0.66 16 14 C -0.08 -0.96 5.56 -91.78 -0.51 -1.47 16 15 C -0.17 -1.41 10.18 -26.73 -0.27 -1.68 16 16 C -0.15 -1.47 10.23 -26.74 -0.27 -1.74 16 17 C 0.12 2.19 5.50 -3.71 -0.02 2.17 16 18 C -0.10 -1.76 1.92 -90.50 -0.17 -1.93 16 19 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 20 C 0.16 3.31 5.41 -4.04 -0.02 3.29 16 21 N -0.73 -19.35 5.38 -59.91 -0.32 -19.67 16 22 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.26 13.06 55.49 0.72 -28.53 16 26 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.15 1.78 3.66 -77.33 -0.28 1.50 16 37 H 0.25 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.16 2.05 6.78 -51.93 -0.35 1.70 16 39 H 0.10 0.75 8.01 -51.93 -0.42 0.33 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.10 2.26 6.25 -51.93 -0.32 1.94 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 47 H 0.38 10.86 6.89 -40.82 -0.28 10.58 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -34.84 382.36 -8.44 -43.27 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.35 Total: 10.15 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.77 Total: -1.32 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.20 Total: -63.53 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.14 Total: -12.39 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.84 -8.44 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217767.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.428 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds