Wall clock time and date at job start Tue Mar 31 2020 17:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46284 * 2 1 4 4 C 1.53043 * 109.45389 * 240.03645 * 2 1 3 5 5 C 1.52768 * 109.38094 * 301.22992 * 4 2 1 6 6 N 1.46926 * 109.00409 * 305.58453 * 5 4 2 7 7 C 1.34778 * 120.62972 * 233.58697 * 6 5 4 8 8 O 1.21618 * 120.00044 * 184.49945 * 7 6 5 9 9 C 1.47413 * 119.99983 * 4.48843 * 7 6 5 10 10 N 1.36069 * 126.45171 * 354.22088 * 9 7 6 11 11 C 1.29930 * 108.47976 * 180.29710 * 10 9 7 12 12 O 1.34048 * 109.24309 * 359.73127 * 11 10 9 13 13 C 1.34253 * 108.22815 * 0.02562 * 12 11 10 14 14 C 1.50706 * 126.52747 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49629 * 60.02888 * 14 13 12 16 16 C 1.52994 * 117.49648 * 351.40401 * 14 13 12 17 17 C 1.46927 * 118.74022 * 53.30821 * 6 5 4 18 18 C 1.53039 * 109.46035 * 119.97249 * 2 1 3 19 19 H 1.09003 * 109.49902 * 178.59600 * 18 2 1 20 20 C 1.52998 * 109.49984 * 298.69188 * 18 2 1 21 21 N 1.46496 * 109.47377 * 184.83899 * 20 18 2 22 22 C 1.36939 * 119.99905 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00137 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99678 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00131 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00359 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47448 * 89.99539 * 26 24 22 28 28 H 1.48493 * 109.47405 * 209.99963 * 26 24 22 29 29 H 1.48504 * 109.47211 * 330.00085 * 26 24 22 30 30 H 1.08997 * 109.47570 * 300.02912 * 1 2 3 31 31 H 1.09006 * 109.46868 * 60.02750 * 1 2 3 32 32 H 1.08997 * 109.47003 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49335 * 61.29648 * 4 2 1 34 34 H 1.08993 * 109.50261 * 181.36748 * 4 2 1 35 35 H 1.08997 * 109.50945 * 185.70338 * 5 4 2 36 36 H 1.08998 * 109.43498 * 65.41551 * 5 4 2 37 37 H 1.08002 * 125.37742 * 179.75647 * 11 10 9 38 38 H 1.09001 * 115.56249 * 205.71104 * 14 13 12 39 39 H 1.08997 * 117.50028 * 145.02147 * 15 14 13 40 40 H 1.08999 * 117.49950 * 359.97438 * 15 14 13 41 41 H 1.08993 * 117.50342 * 0.02562 * 16 14 13 42 42 H 1.09002 * 117.49595 * 214.97182 * 16 14 13 43 43 H 1.09005 * 109.58158 * 66.43327 * 17 6 5 44 44 H 1.08996 * 109.58912 * 186.70804 * 17 6 5 45 45 H 1.09004 * 109.46976 * 304.84163 * 20 18 2 46 46 H 1.09003 * 109.46993 * 64.83158 * 20 18 2 47 47 H 0.97003 * 119.99805 * 0.02562 * 21 20 18 48 48 H 0.96994 * 120.00411 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7207 -1.2502 5 6 1.5040 -2.1513 -1.2644 6 7 1.8620 -2.8089 -0.0002 7 6 2.5157 -3.9875 -0.0004 8 8 2.7342 -4.5618 1.0492 9 6 2.9657 -4.5807 -1.2727 10 7 2.6984 -4.1126 -2.5221 11 6 3.2587 -4.9041 -3.3869 12 8 3.8986 -5.8865 -2.7371 13 6 3.7287 -5.6981 -1.4187 14 6 4.2738 -6.5630 -0.3115 15 6 5.7930 -6.7192 -0.2200 16 6 4.9319 -7.8862 -0.7075 17 6 1.4993 -2.1542 1.2641 18 6 2.0398 -0.7209 1.2500 19 1 3.1295 -0.7431 1.2381 20 6 1.5571 0.0192 2.4990 21 7 2.1395 -0.6025 3.6908 22 6 1.8486 -0.1063 4.9335 23 1 1.1901 0.7437 5.0350 24 6 2.4001 -0.6958 6.0628 25 7 2.1201 -0.2192 7.2573 26 14 3.5396 -2.1654 5.8872 27 1 4.9409 -1.6923 5.7541 28 1 3.4211 -3.0300 7.0887 29 1 3.1628 -2.9425 4.6791 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6955 -0.1933 -2.1398 34 1 3.1293 -0.7425 -1.2388 35 1 1.9457 -2.6971 -2.0981 36 1 0.4194 -2.1315 -1.3716 37 1 3.2159 -4.7884 -4.4599 38 1 3.7131 -6.5395 0.6230 39 1 6.2319 -6.7987 0.7746 40 1 6.3982 -6.1968 -0.9609 41 1 4.9709 -8.1310 -1.7689 42 1 4.8042 -8.7333 -0.0335 43 1 0.4143 -2.1346 1.3673 44 1 1.9357 -2.7034 2.0983 45 1 1.8670 1.0629 2.4454 46 1 0.4699 -0.0344 2.5556 47 1 2.7319 -1.3652 3.5995 48 1 2.5057 -0.6308 8.0463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133217769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:02 Heat of formation + Delta-G solvation = 41.761400 kcal Electronic energy + Delta-G solvation = -29732.787119 eV Core-core repulsion = 25791.288868 eV Total energy + Delta-G solvation = -3941.498251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.84238 -40.23891 -38.15674 -37.49403 -35.46431 -34.81102 -33.42580 -31.85546 -30.68199 -30.13716 -27.72528 -26.35251 -24.97396 -24.19963 -23.45308 -22.83285 -22.73221 -21.35717 -21.04050 -20.10468 -18.61575 -17.53206 -17.35773 -17.16637 -16.82521 -16.15346 -15.76322 -15.24855 -15.07134 -15.00261 -14.84017 -14.21287 -14.04685 -13.73303 -13.50167 -13.30628 -12.98299 -12.76924 -12.61547 -12.43461 -12.31445 -11.95761 -11.76435 -11.65182 -11.46781 -11.37461 -11.12843 -11.09467 -10.90086 -10.79490 -10.70948 -10.42801 -10.18069 -10.09617 -10.00825 -9.56769 -9.46492 -9.11731 -8.82186 -8.41492 -7.15159 -5.70046 -3.05102 0.77553 1.72037 2.14367 2.96798 3.17305 3.46643 3.49397 3.53511 3.55246 3.66022 4.02935 4.37795 4.52959 4.55395 4.67938 4.78042 4.83653 4.95875 4.96824 5.18697 5.21299 5.25132 5.26916 5.36065 5.43122 5.52737 5.53907 5.61687 5.63048 5.71267 5.74183 5.76987 5.82933 5.86420 5.94816 6.02638 6.10032 6.27387 6.28385 6.36217 6.39213 6.50836 6.70080 6.76608 6.86205 7.08392 7.50223 8.06124 8.16444 8.49089 9.28494 10.01433 10.21110 11.48344 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.004003 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.996526 B = 6992.907322 C = 9218.479437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.124 4.124 5 C 0.060 3.940 6 N -0.589 5.589 7 C 0.595 3.405 8 O -0.532 6.532 9 C -0.060 4.060 10 N -0.458 5.458 11 C 0.174 3.826 12 O -0.197 6.197 13 C 0.075 3.925 14 C -0.088 4.088 15 C -0.157 4.157 16 C -0.168 4.168 17 C 0.117 3.883 18 C -0.105 4.105 19 H 0.072 0.928 20 C 0.165 3.835 21 N -0.757 5.757 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.936 5.936 26 Si 0.879 3.121 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.150 0.850 36 H 0.062 0.938 37 H 0.256 0.744 38 H 0.159 0.841 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.030 0.970 46 H 0.032 0.968 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -11.369 -27.493 29.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.162 4.162 5 C -0.063 4.063 6 N -0.320 5.320 7 C 0.382 3.618 8 O -0.409 6.409 9 C -0.179 4.179 10 N -0.187 5.187 11 C -0.053 4.053 12 O -0.084 6.084 13 C 0.019 3.981 14 C -0.106 4.106 15 C -0.194 4.194 16 C -0.205 4.205 17 C -0.004 4.004 18 C -0.125 4.125 19 H 0.090 0.910 20 C 0.037 3.963 21 N -0.403 5.403 22 C -0.373 4.373 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.584 5.584 26 Si 0.709 3.291 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.197 1.197 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.080 0.920 37 H 0.271 0.729 38 H 0.176 0.824 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.048 0.952 46 H 0.049 0.951 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.604 -11.012 -26.907 29.190 hybrid contribution 1.072 -1.264 -0.063 1.658 sum 3.676 -12.276 -26.970 29.859 Atomic orbital electron populations 1.21979 0.95163 1.01987 1.01809 1.21086 0.96108 0.99316 0.93967 0.90877 1.21819 1.00776 0.95663 0.97982 1.22910 1.00729 0.94450 0.88174 1.47918 1.55533 1.20019 1.08507 1.16779 0.78071 0.81137 0.85798 1.90813 1.57478 1.61311 1.31316 1.21460 1.06076 0.97612 0.92757 1.70279 1.22185 1.26937 0.99282 1.28189 0.93084 0.83664 1.00364 1.84327 1.59472 1.46669 1.17908 1.22613 0.97827 0.96192 0.81451 1.20866 0.97029 0.97228 0.95518 1.23097 0.90978 1.01365 1.03945 1.23090 1.02976 0.91684 1.02725 1.21806 1.00373 0.92899 0.85359 1.21731 1.00734 0.94383 0.95625 0.90996 1.20669 0.96396 0.94931 0.84275 1.42783 1.57714 1.37198 1.02590 1.19051 1.24315 1.11995 0.81897 0.89225 1.24643 1.00246 0.99019 0.95097 1.69702 1.48445 1.43224 0.97001 0.86617 0.81476 0.83790 0.77248 1.21183 1.21716 1.19741 0.91772 0.93092 0.92472 0.91025 0.92077 0.83425 0.91958 0.72870 0.82368 0.87092 0.88409 0.88144 0.87399 0.90872 0.88610 0.95234 0.95063 0.80566 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.11 37.15 0.30 -1.51 16 2 C -0.09 -1.10 2.71 -90.58 -0.25 -1.35 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.12 -1.40 5.61 -26.83 -0.15 -1.55 16 5 C 0.06 0.72 5.83 -3.93 -0.02 0.70 16 6 N -0.59 -8.93 2.98 -174.30 -0.52 -9.45 16 7 C 0.60 9.68 7.68 -12.52 -0.10 9.58 16 8 O -0.53 -10.16 14.29 5.26 0.08 -10.08 16 9 C -0.06 -0.79 6.75 -83.02 -0.56 -1.35 16 10 N -0.46 -4.80 7.67 -11.48 -0.09 -4.89 16 11 C 0.17 1.23 13.19 51.96 0.69 1.91 16 12 O -0.20 -1.78 10.50 6.53 0.07 -1.71 16 13 C 0.08 0.87 6.90 -35.08 -0.24 0.63 16 14 C -0.09 -0.95 5.66 -91.77 -0.52 -1.47 16 15 C -0.16 -1.37 10.23 -26.73 -0.27 -1.65 16 16 C -0.17 -1.30 10.18 -26.73 -0.27 -1.58 16 17 C 0.12 1.99 5.04 -3.71 -0.02 1.97 16 18 C -0.11 -1.72 2.15 -90.50 -0.19 -1.91 16 19 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.16 3.27 5.19 -4.05 -0.02 3.24 16 21 N -0.76 -18.79 5.18 -59.91 -0.31 -19.10 16 22 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 23 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 24 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 25 N -0.94 -30.24 13.97 55.49 0.78 -29.47 16 26 Si 0.88 23.34 27.74 -169.99 -4.71 18.63 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 29 H -0.27 -7.01 6.52 56.52 0.37 -6.65 16 30 H 0.06 0.83 6.57 -51.93 -0.34 0.48 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.70 4.99 -51.93 -0.26 0.44 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.15 1.70 3.61 -80.55 -0.29 1.41 16 36 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 37 H 0.26 0.34 8.06 -52.49 -0.42 -0.08 16 38 H 0.16 2.00 6.57 -51.93 -0.34 1.66 16 39 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.70 8.00 -51.93 -0.42 0.29 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.21 6.69 -51.93 -0.35 0.86 16 44 H 0.10 1.95 6.24 -51.93 -0.32 1.63 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.03 0.62 6.72 -51.93 -0.35 0.27 16 47 H 0.36 9.00 4.76 -40.82 -0.19 8.80 16 48 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -35.67 372.84 -8.01 -43.68 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.03 Total: 8.30 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.88 Total: -1.53 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.14 Total: -62.90 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.14 Total: -11.79 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.71 Total: 18.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.67 -8.01 -43.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.441 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds