Wall clock time and date at job start Tue Mar 31 2020 17:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46284 * 2 1 4 4 C 1.53043 * 109.45389 * 240.03645 * 2 1 3 5 5 C 1.52768 * 109.38094 * 301.22992 * 4 2 1 6 6 N 1.46926 * 109.00409 * 305.58453 * 5 4 2 7 7 C 1.34778 * 120.62972 * 233.58697 * 6 5 4 8 8 O 1.21618 * 120.00044 * 184.49945 * 7 6 5 9 9 C 1.47413 * 119.99983 * 4.48843 * 7 6 5 10 10 N 1.36069 * 126.45171 * 354.22088 * 9 7 6 11 11 C 1.29930 * 108.47976 * 180.29710 * 10 9 7 12 12 O 1.34048 * 109.24309 * 359.73127 * 11 10 9 13 13 C 1.34253 * 108.22815 * 0.02562 * 12 11 10 14 14 C 1.50706 * 126.52747 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49629 * 60.02888 * 14 13 12 16 16 C 1.52994 * 117.49648 * 351.40401 * 14 13 12 17 17 C 1.46927 * 118.74022 * 53.30821 * 6 5 4 18 18 C 1.53039 * 109.46035 * 119.97249 * 2 1 3 19 19 H 1.09003 * 109.49902 * 178.59600 * 18 2 1 20 20 C 1.52998 * 109.49984 * 298.69188 * 18 2 1 21 21 N 1.46496 * 109.47377 * 184.83899 * 20 18 2 22 22 C 1.36939 * 119.99905 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00137 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99678 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00131 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00359 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47448 * 89.99539 * 26 24 22 28 28 H 1.48493 * 109.47405 * 209.99963 * 26 24 22 29 29 H 1.48504 * 109.47211 * 330.00085 * 26 24 22 30 30 H 1.08997 * 109.47570 * 300.02912 * 1 2 3 31 31 H 1.09006 * 109.46868 * 60.02750 * 1 2 3 32 32 H 1.08997 * 109.47003 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49335 * 61.29648 * 4 2 1 34 34 H 1.08993 * 109.50261 * 181.36748 * 4 2 1 35 35 H 1.08997 * 109.50945 * 185.70338 * 5 4 2 36 36 H 1.08998 * 109.43498 * 65.41551 * 5 4 2 37 37 H 1.08002 * 125.37742 * 179.75647 * 11 10 9 38 38 H 1.09001 * 115.56249 * 205.71104 * 14 13 12 39 39 H 1.08997 * 117.50028 * 145.02147 * 15 14 13 40 40 H 1.08999 * 117.49950 * 359.97438 * 15 14 13 41 41 H 1.08993 * 117.50342 * 0.02562 * 16 14 13 42 42 H 1.09002 * 117.49595 * 214.97182 * 16 14 13 43 43 H 1.09005 * 109.58158 * 66.43327 * 17 6 5 44 44 H 1.08996 * 109.58912 * 186.70804 * 17 6 5 45 45 H 1.09004 * 109.46976 * 304.84163 * 20 18 2 46 46 H 1.09003 * 109.46993 * 64.83158 * 20 18 2 47 47 H 0.97003 * 119.99805 * 0.02562 * 21 20 18 48 48 H 0.96994 * 120.00411 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7207 -1.2502 5 6 1.5040 -2.1513 -1.2644 6 7 1.8620 -2.8089 -0.0002 7 6 2.5157 -3.9875 -0.0004 8 8 2.7342 -4.5618 1.0492 9 6 2.9657 -4.5807 -1.2727 10 7 2.6984 -4.1126 -2.5221 11 6 3.2587 -4.9041 -3.3869 12 8 3.8986 -5.8865 -2.7371 13 6 3.7287 -5.6981 -1.4187 14 6 4.2738 -6.5630 -0.3115 15 6 5.7930 -6.7192 -0.2200 16 6 4.9319 -7.8862 -0.7075 17 6 1.4993 -2.1542 1.2641 18 6 2.0398 -0.7209 1.2500 19 1 3.1295 -0.7431 1.2381 20 6 1.5571 0.0192 2.4990 21 7 2.1395 -0.6025 3.6908 22 6 1.8486 -0.1063 4.9335 23 1 1.1901 0.7437 5.0350 24 6 2.4001 -0.6958 6.0628 25 7 2.1201 -0.2192 7.2573 26 14 3.5396 -2.1654 5.8872 27 1 4.9409 -1.6923 5.7541 28 1 3.4211 -3.0300 7.0887 29 1 3.1628 -2.9425 4.6791 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6955 -0.1933 -2.1398 34 1 3.1293 -0.7425 -1.2388 35 1 1.9457 -2.6971 -2.0981 36 1 0.4194 -2.1315 -1.3716 37 1 3.2159 -4.7884 -4.4599 38 1 3.7131 -6.5395 0.6230 39 1 6.2319 -6.7987 0.7746 40 1 6.3982 -6.1968 -0.9609 41 1 4.9709 -8.1310 -1.7689 42 1 4.8042 -8.7333 -0.0335 43 1 0.4143 -2.1346 1.3673 44 1 1.9357 -2.7034 2.0983 45 1 1.8670 1.0629 2.4454 46 1 0.4699 -0.0344 2.5556 47 1 2.7319 -1.3652 3.5995 48 1 2.5057 -0.6308 8.0463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133217769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:01 Heat of formation + Delta-G solvation = 16.833578 kcal Electronic energy + Delta-G solvation = -29733.868070 eV Core-core repulsion = 25791.288868 eV Total energy + Delta-G solvation = -3942.579202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.58152 -41.42530 -39.37339 -38.22993 -36.85401 -36.03930 -34.74655 -33.69331 -31.93582 -31.37220 -28.81949 -27.84886 -26.20048 -24.98769 -24.56296 -24.35506 -23.38441 -22.61030 -22.20624 -21.11075 -20.03536 -19.22949 -18.45089 -17.97832 -17.73310 -17.16105 -16.82684 -16.63577 -16.23447 -16.05219 -15.95626 -15.85512 -15.39720 -14.97356 -14.66700 -14.64365 -14.51280 -14.20315 -13.90100 -13.60245 -13.43237 -13.19139 -13.00218 -12.71751 -12.57812 -12.50270 -12.48950 -12.25837 -12.15932 -12.08990 -11.89207 -11.84638 -11.69061 -11.58461 -11.33528 -11.27086 -11.01961 -10.50468 -9.96829 -9.55792 -9.32696 -8.07743 -5.39724 -0.07167 0.98500 1.31500 1.34433 1.40972 1.42024 1.88724 2.11357 2.42167 2.77294 2.97403 3.24104 3.27756 3.46927 3.57589 3.76239 3.79924 3.82778 3.90800 3.96960 4.05236 4.12030 4.27042 4.34487 4.41267 4.49607 4.53019 4.60795 4.63925 4.73228 4.75965 4.78397 4.86299 4.89214 4.94407 5.04528 5.04940 5.10854 5.15117 5.18723 5.25515 5.33273 5.40498 5.54677 5.71949 5.78469 6.17190 6.22534 6.48141 6.98702 7.02704 7.79893 7.97240 9.13906 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.004003 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.996526 B = 6992.907322 C = 9218.479437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.082 0.918 4 C -0.116 4.116 5 C 0.056 3.944 6 N -0.589 5.589 7 C 0.584 3.416 8 O -0.576 6.576 9 C -0.088 4.088 10 N -0.481 5.481 11 C 0.207 3.793 12 O -0.192 6.192 13 C 0.078 3.922 14 C -0.119 4.119 15 C -0.155 4.155 16 C -0.142 4.142 17 C 0.123 3.877 18 C -0.093 4.093 19 H 0.058 0.942 20 C 0.163 3.837 21 N -0.762 5.762 22 C -0.231 4.231 23 H 0.064 0.936 24 C -0.055 4.055 25 N -0.979 5.979 26 Si 0.943 3.057 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.267 1.267 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.162 0.838 36 H 0.071 0.929 37 H 0.313 0.687 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.035 0.965 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -12.269 -31.982 34.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.101 0.899 4 C -0.154 4.154 5 C -0.065 4.065 6 N -0.319 5.319 7 C 0.373 3.627 8 O -0.456 6.456 9 C -0.206 4.206 10 N -0.209 5.209 11 C -0.020 4.020 12 O -0.079 6.079 13 C 0.021 3.979 14 C -0.138 4.138 15 C -0.192 4.192 16 C -0.179 4.179 17 C 0.000 4.000 18 C -0.112 4.112 19 H 0.077 0.923 20 C 0.037 3.963 21 N -0.407 5.407 22 C -0.362 4.362 23 H 0.082 0.918 24 C -0.247 4.247 25 N -0.630 5.630 26 Si 0.772 3.228 27 H -0.203 1.203 28 H -0.217 1.217 29 H -0.193 1.193 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.072 0.928 35 H 0.178 0.822 36 H 0.089 0.911 37 H 0.328 0.672 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.194 0.806 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.324 -11.880 -31.460 33.792 hybrid contribution 0.778 -0.948 1.216 1.727 sum 4.103 -12.828 -30.244 33.107 Atomic orbital electron populations 1.21946 0.94202 1.01885 1.02533 1.21093 0.96829 0.99411 0.92674 0.89946 1.21792 1.00283 0.95067 0.98215 1.23188 1.01443 0.94880 0.86946 1.48010 1.55209 1.19912 1.08751 1.17304 0.77615 0.81107 0.86667 1.90777 1.59146 1.62491 1.33217 1.21052 1.08082 0.98845 0.92581 1.70101 1.23989 1.28338 0.98460 1.29486 0.89520 0.81246 1.01784 1.84367 1.59693 1.47197 1.16618 1.22598 0.97182 0.95551 0.82548 1.20753 0.98094 0.99977 0.94945 1.23178 0.89659 1.01951 1.04394 1.23197 1.00136 0.90748 1.03773 1.21534 1.00043 0.92878 0.85522 1.21595 0.99798 0.94029 0.95819 0.92332 1.20852 0.96323 0.95130 0.84025 1.42864 1.57899 1.37288 1.02665 1.19081 1.22700 1.10695 0.83749 0.91787 1.25338 1.02450 1.02073 0.94840 1.69847 1.50309 1.45071 0.97802 0.85580 0.79691 0.80445 0.77126 1.20312 1.21663 1.19270 0.93148 0.90290 0.92965 0.87653 0.92808 0.82194 0.91065 0.67236 0.85244 0.87003 0.87703 0.86694 0.86170 0.90725 0.92576 0.94958 0.94716 0.80612 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.11 71.98 0.58 -2.63 16 2 C -0.08 -1.92 2.71 -10.77 -0.03 -1.95 16 3 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 4 C -0.12 -2.28 5.61 30.53 0.17 -2.11 16 5 C 0.06 1.25 5.83 86.22 0.50 1.75 16 6 N -0.59 -17.95 2.98 -823.61 -2.45 -20.40 16 7 C 0.58 19.60 7.68 86.66 0.67 20.27 16 8 O -0.58 -23.45 14.29 -4.09 -0.06 -23.51 16 9 C -0.09 -2.27 6.75 40.41 0.27 -2.00 16 10 N -0.48 -8.80 7.67 -305.16 -2.34 -11.14 16 11 C 0.21 2.03 13.19 130.52 1.72 3.75 16 12 O -0.19 -2.85 10.50 0.44 0.00 -2.85 16 13 C 0.08 1.73 6.90 25.19 0.17 1.90 16 14 C -0.12 -2.58 5.66 -11.54 -0.07 -2.65 16 15 C -0.15 -2.57 10.23 30.60 0.31 -2.26 16 16 C -0.14 -1.96 10.18 30.59 0.31 -1.65 16 17 C 0.12 4.30 5.04 86.36 0.43 4.73 16 18 C -0.09 -3.03 2.15 -10.72 -0.02 -3.06 16 19 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 20 C 0.16 6.53 5.19 86.38 0.45 6.98 16 21 N -0.76 -38.66 5.18 -343.45 -1.78 -40.44 16 22 C -0.23 -13.93 10.47 84.03 0.88 -13.05 16 23 H 0.06 4.12 8.06 -2.91 -0.02 4.10 16 24 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 25 N -0.98 -65.09 13.97 21.65 0.30 -64.79 16 26 Si 0.94 49.75 27.74 68.60 1.90 51.65 16 27 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 28 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 29 H -0.27 -13.76 6.52 99.48 0.65 -13.11 16 30 H 0.05 1.23 6.57 -2.39 -0.02 1.21 16 31 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.05 1.18 4.99 -2.39 -0.01 1.17 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.16 3.27 3.61 -58.90 -0.21 3.06 16 36 H 0.07 1.46 6.70 -2.39 -0.02 1.45 16 37 H 0.31 -1.19 8.06 -2.91 -0.02 -1.21 16 38 H 0.13 3.57 6.57 -2.39 -0.02 3.55 16 39 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.11 1.27 8.00 -2.39 -0.02 1.25 16 42 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 2.53 6.69 -2.38 -0.02 2.52 16 44 H 0.06 2.41 6.24 -2.39 -0.01 2.40 16 45 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.03 1.39 6.72 -2.39 -0.02 1.37 16 47 H 0.36 18.38 4.76 -92.71 -0.44 17.94 16 48 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -82.09 372.84 2.70 -79.39 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.29 Total: 27.02 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.83 Total: 5.07 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -6.27 Total: -136.77 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.90 Total: 51.65 kcal Total: -82.09 2.70 -79.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133217769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.228 kcal (2) G-P(sol) polarization free energy of solvation -82.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds