Wall clock time and date at job start Tue Mar 31 2020 17:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46019 * 2 1 4 4 C 1.53041 * 109.45652 * 119.97345 * 2 1 3 5 5 C 1.53194 * 109.30751 * 181.37232 * 4 2 1 6 6 N 1.46924 * 108.77781 * 305.35888 * 5 4 2 7 7 C 1.34778 * 120.63273 * 233.58868 * 6 5 4 8 8 O 1.21280 * 119.99760 * 179.97438 * 7 6 5 9 9 C 1.50696 * 120.00007 * 0.02562 * 7 6 5 10 10 N 1.46505 * 109.46904 * 180.02562 * 9 7 6 11 11 C 1.35766 * 119.62355 * 270.24945 * 10 9 7 12 12 C 1.35350 * 120.70209 * 180.30020 * 11 10 9 13 13 C 1.40198 * 119.94515 * 359.73176 * 12 11 10 14 14 C 1.36396 * 119.26743 * 359.97438 * 13 12 11 15 15 C 1.34655 * 119.62414 * 90.00111 * 10 9 7 16 16 O 1.22063 * 119.98962 * 359.97308 * 15 10 9 17 17 C 1.46924 * 118.73482 * 53.86401 * 6 5 4 18 18 C 1.53043 * 109.44678 * 240.02999 * 2 1 3 19 19 H 1.08998 * 109.49901 * 298.57560 * 18 2 1 20 20 C 1.52998 * 109.49635 * 58.67260 * 18 2 1 21 21 N 1.46500 * 109.47121 * 184.99516 * 20 18 2 22 22 C 1.36937 * 120.00326 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99744 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00436 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99459 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00255 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47176 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47582 * 119.99838 * 26 24 22 29 29 H 1.48502 * 109.47272 * 239.99687 * 26 24 22 30 30 H 1.08999 * 109.47001 * 300.03018 * 1 2 3 31 31 H 1.08999 * 109.47140 * 60.03213 * 1 2 3 32 32 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.50430 * 61.42273 * 4 2 1 34 34 H 1.08998 * 109.49646 * 301.31769 * 4 2 1 35 35 H 1.09004 * 109.58264 * 185.57528 * 5 4 2 36 36 H 1.09002 * 109.59277 * 65.15353 * 5 4 2 37 37 H 1.08998 * 109.47389 * 59.99745 * 9 7 6 38 38 H 1.09004 * 109.47100 * 299.99596 * 9 7 6 39 39 H 1.07998 * 119.64683 * 0.02562 * 11 10 9 40 40 H 1.07993 * 120.02708 * 179.70283 * 12 11 10 41 41 H 1.08003 * 120.36318 * 180.02562 * 13 12 11 42 42 H 1.07994 * 120.34800 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.59113 * 65.93031 * 17 6 5 44 44 H 1.09000 * 109.58982 * 186.35171 * 17 6 5 45 45 H 1.08994 * 109.47389 * 304.99825 * 20 18 2 46 46 H 1.08997 * 109.47339 * 64.99995 * 20 18 2 47 47 H 0.97003 * 119.99970 * 0.02562 * 21 20 18 48 48 H 0.97002 * 119.99553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 1.2500 5 6 3.5713 -0.6890 1.2640 6 7 4.0676 -1.2494 -0.0003 7 6 4.9616 -2.2580 -0.0003 8 8 5.3632 -2.7122 -1.0507 9 6 5.4613 -2.8220 1.3047 10 7 6.4173 -3.8994 1.0368 11 6 5.9717 -5.1754 0.9086 12 6 6.8363 -6.1884 0.6671 13 6 8.2072 -5.9233 0.5413 14 6 8.6523 -4.6399 0.6645 15 6 7.7272 -3.6121 0.9156 16 8 8.1120 -2.4592 1.0284 17 6 3.5753 -0.6853 -1.2644 18 6 2.0395 -0.7209 -1.2502 19 1 1.6972 -1.7557 -1.2384 20 6 1.5024 -0.0189 -2.4990 21 7 1.8911 -0.7772 -3.6907 22 6 1.5196 -0.3377 -4.9333 23 1 0.9403 0.5681 -5.0348 24 6 1.8874 -1.0565 -6.0624 25 7 2.5938 -2.1602 -5.9387 26 14 1.3811 -0.4567 -7.7574 27 1 0.5990 0.7987 -7.6250 28 1 2.5942 -0.2007 -8.5747 29 1 0.5472 -1.4914 -8.4201 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6976 -1.7557 1.2383 34 1 1.6574 -0.2208 2.1398 35 1 3.9416 -1.2851 2.0982 36 1 3.9145 0.3404 1.3671 37 1 4.6207 -3.2154 1.8762 38 1 5.9527 -2.0347 1.8764 39 1 4.9166 -5.3851 1.0048 40 1 6.4705 -7.2000 0.5718 41 1 8.9031 -6.7264 0.3482 42 1 9.7045 -4.4159 0.5703 43 1 3.9188 0.3444 -1.3634 44 1 3.9482 -1.2788 -2.0992 45 1 0.4154 0.0394 -2.4439 46 1 1.9177 0.9872 -2.5572 47 1 2.4111 -1.5910 -3.5995 48 1 2.8511 -2.6623 -6.7277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133301375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:25 Heat of formation + Delta-G solvation = -20.558856 kcal Electronic energy + Delta-G solvation = -29286.382530 eV Core-core repulsion = 25342.181870 eV Total energy + Delta-G solvation = -3944.200660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61979 -40.05874 -37.98153 -36.96548 -35.05308 -34.66452 -33.74776 -31.91725 -30.17595 -29.90042 -29.15795 -27.71796 -25.50687 -24.12012 -23.52180 -23.24565 -22.67407 -21.27395 -20.11298 -19.23035 -17.80119 -17.55083 -17.38189 -16.96845 -16.51659 -15.80965 -15.43222 -15.22205 -14.87243 -14.69401 -14.41347 -14.26293 -14.02618 -13.82952 -13.53155 -13.49125 -13.09877 -12.75407 -12.67598 -12.51059 -12.33673 -12.06393 -12.00156 -11.89771 -11.79234 -11.56155 -11.02598 -10.90915 -10.82299 -10.64615 -10.61136 -10.29062 -10.20554 -10.06263 -9.94473 -9.66696 -9.56491 -8.84729 -8.57351 -8.10586 -6.87311 -5.70911 -3.00580 0.68879 1.77778 2.29433 2.54767 2.99339 3.46421 3.51393 3.54232 3.57730 4.26470 4.35096 4.39529 4.55448 4.62672 4.68007 4.76667 4.82259 4.84135 5.00212 5.09386 5.10937 5.17131 5.21552 5.28329 5.58918 5.60357 5.63518 5.66944 5.76030 5.78386 5.84499 5.89733 5.91493 5.99214 6.12672 6.14215 6.21069 6.29138 6.33804 6.41674 6.53345 6.57722 6.79077 6.87591 6.90757 7.36691 7.74116 7.91809 8.13309 8.46814 9.57900 10.15770 10.49666 11.51508 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.003321 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.048804 B = 8429.674692 C =10365.937225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.104 3.896 6 N -0.607 5.607 7 C 0.498 3.502 8 O -0.515 6.515 9 C 0.072 3.928 10 N -0.480 5.480 11 C 0.144 3.856 12 C -0.233 4.233 13 C -0.015 4.015 14 C -0.243 4.243 15 C 0.520 3.480 16 O -0.552 6.552 17 C 0.120 3.880 18 C -0.100 4.100 19 H 0.074 0.926 20 C 0.158 3.842 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -5.153 23.555 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.019 4.019 6 N -0.341 5.341 7 C 0.283 3.717 8 O -0.390 6.390 9 C -0.054 4.054 10 N -0.190 5.190 11 C 0.017 3.983 12 C -0.256 4.256 13 C -0.036 4.036 14 C -0.265 4.265 15 C 0.322 3.678 16 O -0.435 6.435 17 C -0.001 4.001 18 C -0.120 4.120 19 H 0.092 0.908 20 C 0.030 3.970 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.178 0.822 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.045 0.955 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.569 -4.520 22.929 23.641 hybrid contribution -0.217 -0.036 -1.043 1.066 sum 3.352 -4.556 21.886 22.605 Atomic orbital electron populations 1.21879 0.94873 1.01955 1.01782 1.21098 0.96032 0.99457 0.93846 0.90981 1.21990 0.94311 1.01671 0.98673 1.21800 0.95012 0.99643 0.85434 1.48132 1.42942 1.34923 1.08112 1.20585 0.79645 0.80458 0.91026 1.90827 1.56399 1.59094 1.32673 1.21862 0.93816 0.92503 0.97189 1.45074 1.08864 1.07213 1.57874 1.21924 1.00281 0.82765 0.93346 1.20630 0.93311 0.99503 1.12154 1.21436 0.95594 0.96757 0.89837 1.22078 1.00633 0.92525 1.11235 1.17152 0.81032 0.90553 0.79073 1.90953 1.77639 1.21477 1.53412 1.21862 0.93672 0.99165 0.85402 1.21789 0.94272 1.00695 0.95210 0.90785 1.20725 0.96832 0.94070 0.85350 1.42421 1.65455 1.29060 1.00843 1.19240 1.27929 1.06295 0.83786 0.91194 1.24752 1.00812 0.97509 0.97822 1.69687 1.42427 1.17262 1.28404 0.86143 0.77641 0.77714 0.84841 1.20588 1.21868 1.21909 0.93194 0.91581 0.92785 0.91430 0.90669 0.90345 0.90879 0.86271 0.85433 0.82247 0.83660 0.84796 0.83484 0.91447 0.87799 0.95487 0.96392 0.78175 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.82 37.16 0.33 -1.29 16 2 C -0.09 -0.98 2.23 -90.58 -0.20 -1.18 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.10 5.36 -26.61 -0.14 -1.25 16 5 C 0.10 0.92 6.34 -3.71 -0.02 0.90 16 6 N -0.61 -8.22 2.97 -172.50 -0.51 -8.73 16 7 C 0.50 7.53 7.76 -10.99 -0.09 7.45 16 8 O -0.52 -10.62 15.84 5.56 0.09 -10.53 16 9 C 0.07 0.76 4.16 -5.19 -0.02 0.73 16 10 N -0.48 -5.81 2.07 -121.06 -0.25 -6.06 16 11 C 0.14 1.33 10.28 -16.84 -0.17 1.16 16 12 C -0.23 -1.95 10.01 -39.88 -0.40 -2.35 16 13 C -0.01 -0.13 10.10 -39.51 -0.40 -0.53 16 14 C -0.24 -2.92 9.99 -39.38 -0.39 -3.31 16 15 C 0.52 7.74 7.40 -15.45 -0.11 7.62 16 16 O -0.55 -10.18 16.64 4.86 0.08 -10.10 16 17 C 0.12 2.03 5.55 -3.49 -0.02 2.01 16 18 C -0.10 -1.57 1.93 -90.27 -0.17 -1.75 16 19 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 20 C 0.16 3.13 5.41 -4.04 -0.02 3.11 16 21 N -0.73 -18.89 5.38 -59.91 -0.32 -19.21 16 22 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 26 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.82 6.29 -51.93 -0.33 0.49 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.46 5.93 -51.93 -0.31 0.15 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.70 7.57 -51.93 -0.39 0.31 16 38 H 0.13 1.28 7.19 -51.93 -0.37 0.91 16 39 H 0.16 0.96 8.04 -52.49 -0.42 0.54 16 40 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.10 2.23 6.23 -51.93 -0.32 1.91 16 45 H 0.03 0.53 6.14 -51.93 -0.32 0.22 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 10.64 6.92 -40.82 -0.28 10.36 16 48 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -38.92 385.54 -8.86 -47.78 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.37 Total: 7.72 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.09 Total: 3.81 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.36 Total: -62.42 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.63 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.92 -8.86 -47.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133301375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.223 kcal (2) G-P(sol) polarization free energy of solvation -38.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds