Wall clock time and date at job start Tue Mar 31 2020 17:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46019 * 2 1 4 4 C 1.53041 * 109.45652 * 119.97345 * 2 1 3 5 5 C 1.53194 * 109.30751 * 181.37232 * 4 2 1 6 6 N 1.46924 * 108.77781 * 305.35888 * 5 4 2 7 7 C 1.34778 * 120.63273 * 233.58868 * 6 5 4 8 8 O 1.21280 * 119.99760 * 179.97438 * 7 6 5 9 9 C 1.50696 * 120.00007 * 0.02562 * 7 6 5 10 10 N 1.46505 * 109.46904 * 180.02562 * 9 7 6 11 11 C 1.35766 * 119.62355 * 270.24945 * 10 9 7 12 12 C 1.35350 * 120.70209 * 180.30020 * 11 10 9 13 13 C 1.40198 * 119.94515 * 359.73176 * 12 11 10 14 14 C 1.36396 * 119.26743 * 359.97438 * 13 12 11 15 15 C 1.34655 * 119.62414 * 90.00111 * 10 9 7 16 16 O 1.22063 * 119.98962 * 359.97308 * 15 10 9 17 17 C 1.46924 * 118.73482 * 53.86401 * 6 5 4 18 18 C 1.53043 * 109.44678 * 240.02999 * 2 1 3 19 19 H 1.08998 * 109.49901 * 298.57560 * 18 2 1 20 20 C 1.52998 * 109.49635 * 58.67260 * 18 2 1 21 21 N 1.46500 * 109.47121 * 184.99516 * 20 18 2 22 22 C 1.36937 * 120.00326 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99744 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00436 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99459 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00255 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47176 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47582 * 119.99838 * 26 24 22 29 29 H 1.48502 * 109.47272 * 239.99687 * 26 24 22 30 30 H 1.08999 * 109.47001 * 300.03018 * 1 2 3 31 31 H 1.08999 * 109.47140 * 60.03213 * 1 2 3 32 32 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.50430 * 61.42273 * 4 2 1 34 34 H 1.08998 * 109.49646 * 301.31769 * 4 2 1 35 35 H 1.09004 * 109.58264 * 185.57528 * 5 4 2 36 36 H 1.09002 * 109.59277 * 65.15353 * 5 4 2 37 37 H 1.08998 * 109.47389 * 59.99745 * 9 7 6 38 38 H 1.09004 * 109.47100 * 299.99596 * 9 7 6 39 39 H 1.07998 * 119.64683 * 0.02562 * 11 10 9 40 40 H 1.07993 * 120.02708 * 179.70283 * 12 11 10 41 41 H 1.08003 * 120.36318 * 180.02562 * 13 12 11 42 42 H 1.07994 * 120.34800 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.59113 * 65.93031 * 17 6 5 44 44 H 1.09000 * 109.58982 * 186.35171 * 17 6 5 45 45 H 1.08994 * 109.47389 * 304.99825 * 20 18 2 46 46 H 1.08997 * 109.47339 * 64.99995 * 20 18 2 47 47 H 0.97003 * 119.99970 * 0.02562 * 21 20 18 48 48 H 0.97002 * 119.99553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 1.2500 5 6 3.5713 -0.6890 1.2640 6 7 4.0676 -1.2494 -0.0003 7 6 4.9616 -2.2580 -0.0003 8 8 5.3632 -2.7122 -1.0507 9 6 5.4613 -2.8220 1.3047 10 7 6.4173 -3.8994 1.0368 11 6 5.9717 -5.1754 0.9086 12 6 6.8363 -6.1884 0.6671 13 6 8.2072 -5.9233 0.5413 14 6 8.6523 -4.6399 0.6645 15 6 7.7272 -3.6121 0.9156 16 8 8.1120 -2.4592 1.0284 17 6 3.5753 -0.6853 -1.2644 18 6 2.0395 -0.7209 -1.2502 19 1 1.6972 -1.7557 -1.2384 20 6 1.5024 -0.0189 -2.4990 21 7 1.8911 -0.7772 -3.6907 22 6 1.5196 -0.3377 -4.9333 23 1 0.9403 0.5681 -5.0348 24 6 1.8874 -1.0565 -6.0624 25 7 2.5938 -2.1602 -5.9387 26 14 1.3811 -0.4567 -7.7574 27 1 0.5990 0.7987 -7.6250 28 1 2.5942 -0.2007 -8.5747 29 1 0.5472 -1.4914 -8.4201 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6976 -1.7557 1.2383 34 1 1.6574 -0.2208 2.1398 35 1 3.9416 -1.2851 2.0982 36 1 3.9145 0.3404 1.3671 37 1 4.6207 -3.2154 1.8762 38 1 5.9527 -2.0347 1.8764 39 1 4.9166 -5.3851 1.0048 40 1 6.4705 -7.2000 0.5718 41 1 8.9031 -6.7264 0.3482 42 1 9.7045 -4.4159 0.5703 43 1 3.9188 0.3444 -1.3634 44 1 3.9482 -1.2788 -2.0992 45 1 0.4154 0.0394 -2.4439 46 1 1.9177 0.9872 -2.5572 47 1 2.4111 -1.5910 -3.5995 48 1 2.8511 -2.6623 -6.7277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133301375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:24 Heat of formation + Delta-G solvation = -48.086974 kcal Electronic energy + Delta-G solvation = -29287.576239 eV Core-core repulsion = 25342.181870 eV Total energy + Delta-G solvation = -3945.394369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.55070 -41.15999 -39.19364 -37.96784 -36.66896 -35.55706 -35.11672 -33.53786 -31.65617 -30.88752 -30.10512 -28.82079 -27.10571 -25.14470 -24.82822 -24.43015 -23.62556 -22.60427 -21.31616 -20.28602 -19.18636 -18.72115 -18.41058 -18.28553 -17.41660 -16.89920 -16.76947 -16.53094 -16.26065 -15.66446 -15.56507 -15.36572 -15.23375 -15.11283 -14.98381 -14.54873 -14.30375 -14.13419 -14.06297 -13.46484 -13.24412 -13.09726 -13.08329 -13.00159 -12.81413 -12.75325 -12.65194 -12.60516 -12.16103 -12.01403 -11.92639 -11.79584 -11.56548 -11.29494 -11.16799 -11.10932 -10.98199 -10.70696 -9.73169 -9.02238 -8.98770 -7.97323 -5.27423 -0.10657 0.92358 1.41460 1.43030 1.43461 1.45214 1.55130 1.97322 2.53107 2.69446 3.33579 3.36043 3.63361 3.66688 3.73947 3.79234 3.83349 3.99171 4.04162 4.09090 4.16088 4.20541 4.27227 4.35453 4.39301 4.50951 4.56209 4.60001 4.72872 4.79702 4.81621 4.94381 4.95630 5.02730 5.08391 5.14122 5.16655 5.23593 5.26936 5.37730 5.42572 5.46551 5.51238 5.58841 5.63508 6.03297 6.23717 6.29219 6.92500 7.01576 7.29125 8.06000 8.27629 9.26452 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.003321 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.048804 B = 8429.674692 C =10365.937225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.078 0.922 4 C -0.120 4.120 5 C 0.095 3.905 6 N -0.602 5.602 7 C 0.488 3.512 8 O -0.585 6.585 9 C 0.078 3.922 10 N -0.483 5.483 11 C 0.132 3.868 12 C -0.232 4.232 13 C 0.007 3.993 14 C -0.285 4.285 15 C 0.498 3.502 16 O -0.611 6.611 17 C 0.127 3.873 18 C -0.083 4.083 19 H 0.057 0.943 20 C 0.155 3.845 21 N -0.748 5.748 22 C -0.245 4.245 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.975 3.025 27 H -0.262 1.262 28 H -0.296 1.296 29 H -0.291 1.291 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.178 0.822 38 H 0.134 0.866 39 H 0.197 0.803 40 H 0.183 0.817 41 H 0.169 0.831 42 H 0.145 0.855 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.018 0.982 47 H 0.370 0.630 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -5.686 26.499 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.026 4.026 6 N -0.334 5.334 7 C 0.276 3.724 8 O -0.465 6.465 9 C -0.047 4.047 10 N -0.191 5.191 11 C 0.006 3.994 12 C -0.254 4.254 13 C -0.015 4.015 14 C -0.307 4.307 15 C 0.303 3.697 16 O -0.499 6.499 17 C 0.004 3.996 18 C -0.103 4.103 19 H 0.075 0.925 20 C 0.029 3.971 21 N -0.391 5.391 22 C -0.377 4.377 23 H 0.097 0.903 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.804 3.196 27 H -0.186 1.186 28 H -0.223 1.223 29 H -0.218 1.218 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.195 0.805 38 H 0.152 0.848 39 H 0.214 0.786 40 H 0.200 0.800 41 H 0.187 0.813 42 H 0.163 0.837 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.201 0.799 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.465 -5.026 25.950 26.473 hybrid contribution 0.357 0.095 -1.924 1.959 sum 1.822 -4.930 24.026 24.594 Atomic orbital electron populations 1.21847 0.94132 1.01903 1.02291 1.21111 0.96552 0.99523 0.92813 0.90360 1.21983 0.93639 1.01910 0.98202 1.22261 0.95486 1.00894 0.83966 1.48226 1.42307 1.34318 1.08590 1.21511 0.78892 0.80062 0.91946 1.90795 1.58776 1.61412 1.35488 1.22087 0.95211 0.92812 0.94543 1.45139 1.08283 1.08660 1.57055 1.22707 1.02408 0.81710 0.92572 1.21200 0.92810 1.01084 1.10273 1.21893 0.96875 0.96232 0.86481 1.22131 1.00488 0.93524 1.14545 1.17641 0.82448 0.90443 0.79181 1.90892 1.78778 1.23427 1.56834 1.21463 0.94499 0.97808 0.85831 1.21616 0.93127 0.99837 0.95723 0.92458 1.20943 0.97284 0.93721 0.85188 1.42684 1.65253 1.29063 1.02063 1.19704 1.26789 1.06092 0.85067 0.90345 1.25643 1.01573 0.97963 1.01913 1.69876 1.44453 1.18927 1.29058 0.85041 0.77057 0.77787 0.79697 1.18598 1.22342 1.21780 0.90150 0.93591 0.93118 0.91092 0.86755 0.86257 0.89811 0.80492 0.84810 0.78584 0.80017 0.81344 0.83735 0.91886 0.93478 0.94603 0.96419 0.79882 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.82 71.98 0.63 -2.14 16 2 C -0.08 -1.66 2.23 -10.77 -0.02 -1.68 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.12 -1.53 5.36 30.67 0.16 -1.37 16 5 C 0.09 1.34 6.34 86.36 0.55 1.89 16 6 N -0.60 -16.07 2.97 -818.07 -2.43 -18.50 16 7 C 0.49 14.95 7.76 87.66 0.68 15.63 16 8 O -0.59 -25.74 15.84 -3.03 -0.05 -25.78 16 9 C 0.08 1.50 4.16 85.63 0.36 1.86 16 10 N -0.48 -11.33 2.07 -655.05 -1.36 -12.69 16 11 C 0.13 2.12 10.28 83.42 0.86 2.98 16 12 C -0.23 -3.20 10.01 22.08 0.22 -2.98 16 13 C 0.01 0.11 10.10 22.32 0.23 0.34 16 14 C -0.29 -7.10 9.99 22.40 0.22 -6.88 16 15 C 0.50 15.47 7.40 84.82 0.63 16.10 16 16 O -0.61 -24.15 16.64 -5.52 -0.09 -24.24 16 17 C 0.13 4.51 5.55 86.51 0.48 4.99 16 18 C -0.08 -2.65 1.93 -10.57 -0.02 -2.67 16 19 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 20 C 0.16 6.28 5.41 86.38 0.47 6.75 16 21 N -0.75 -40.23 5.38 -343.47 -1.85 -42.08 16 22 C -0.24 -14.31 9.99 84.03 0.84 -13.47 16 23 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 24 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 25 N -0.97 -63.49 13.06 21.65 0.28 -63.21 16 26 Si 0.98 48.17 29.55 68.60 2.03 50.20 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 29 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.06 6.29 -2.39 -0.02 1.04 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.12 0.77 5.93 -2.38 -0.01 0.76 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.18 1.22 7.57 -2.39 -0.02 1.21 16 38 H 0.13 2.47 7.19 -2.39 -0.02 2.46 16 39 H 0.20 1.57 8.04 -2.91 -0.02 1.55 16 40 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 2.22 6.23 -2.39 -0.01 2.20 16 45 H 0.04 1.41 6.14 -2.39 -0.01 1.40 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.37 21.83 6.92 -92.71 -0.64 21.19 16 48 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -95.29 385.54 3.61 -91.68 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.32 Total: 29.58 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.75 Total: 15.04 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -5.35 Total: -136.48 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.14 Total: -50.03 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -95.29 3.61 -91.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133301375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.597 kcal (2) G-P(sol) polarization free energy of solvation -95.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds