Wall clock time and date at job start Tue Mar 31 2020 17:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.45033 * 2 1 4 4 C 1.53033 * 109.46027 * 240.03047 * 2 1 3 5 5 C 1.53198 * 109.31348 * 301.34773 * 4 2 1 6 6 N 1.46928 * 108.77455 * 305.36768 * 5 4 2 7 7 C 1.34782 * 120.62730 * 233.58643 * 6 5 4 8 8 O 1.21278 * 119.99529 * 179.97438 * 7 6 5 9 9 C 1.50701 * 120.00050 * 359.97438 * 7 6 5 10 10 N 1.46501 * 109.46808 * 179.97438 * 9 7 6 11 11 C 1.35759 * 119.62596 * 270.22913 * 10 9 7 12 12 C 1.35349 * 120.70256 * 180.24398 * 11 10 9 13 13 C 1.40203 * 119.94716 * 359.50341 * 12 11 10 14 14 C 1.36401 * 119.26492 * 0.25974 * 13 12 11 15 15 C 1.34661 * 119.62372 * 89.99996 * 10 9 7 16 16 O 1.22063 * 119.98308 * 0.02562 * 15 10 9 17 17 C 1.46918 * 118.73923 * 53.85647 * 6 5 4 18 18 C 1.53041 * 109.45310 * 119.96421 * 2 1 3 19 19 H 1.09006 * 109.49349 * 178.64296 * 18 2 1 20 20 C 1.53001 * 109.49776 * 298.70204 * 18 2 1 21 21 N 1.46503 * 109.47122 * 185.00461 * 20 18 2 22 22 C 1.36939 * 120.00436 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99566 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00380 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99963 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00072 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47331 * 89.99831 * 26 24 22 28 28 H 1.48502 * 109.47029 * 209.99893 * 26 24 22 29 29 H 1.48498 * 109.46923 * 329.99824 * 26 24 22 30 30 H 1.08990 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46921 * 299.97026 * 1 2 3 32 32 H 1.09003 * 109.46452 * 59.96585 * 1 2 3 33 33 H 1.09000 * 109.49825 * 181.40135 * 4 2 1 34 34 H 1.08994 * 109.50115 * 61.29809 * 4 2 1 35 35 H 1.09003 * 109.58436 * 185.57986 * 5 4 2 36 36 H 1.09000 * 109.58761 * 65.15612 * 5 4 2 37 37 H 1.08994 * 109.47150 * 60.00055 * 9 7 6 38 38 H 1.09000 * 109.47007 * 299.99799 * 9 7 6 39 39 H 1.07997 * 119.64981 * 0.02562 * 11 10 9 40 40 H 1.08002 * 120.02977 * 179.78962 * 12 11 10 41 41 H 1.07998 * 120.36928 * 180.23487 * 13 12 11 42 42 H 1.07999 * 120.34709 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.58388 * 65.93047 * 17 6 5 44 44 H 1.09005 * 109.58909 * 186.34952 * 17 6 5 45 45 H 1.09003 * 109.47280 * 304.99980 * 20 18 2 46 46 H 1.08999 * 109.47422 * 65.00383 * 20 18 2 47 47 H 0.97002 * 119.99693 * 359.97438 * 21 20 18 48 48 H 0.97002 * 119.99924 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.4995 -2.1542 -1.2641 6 7 1.8624 -2.8089 0.0002 7 6 2.5155 -3.9879 0.0003 8 8 2.8098 -4.5179 1.0506 9 6 2.8799 -4.6475 -1.3048 10 7 3.5785 -5.9070 -1.0370 11 6 4.9302 -5.9110 -0.9106 12 6 5.5982 -7.0629 -0.6680 13 6 4.8920 -8.2667 -0.5344 14 6 3.5335 -8.2599 -0.6569 15 6 2.8722 -7.0469 -0.9143 16 8 1.6569 -7.0266 -1.0268 17 6 1.4945 -2.1568 1.2643 18 6 2.0397 -0.7207 1.2502 19 1 3.1295 -0.7423 1.2388 20 6 1.5567 0.0195 2.4990 21 7 2.1421 -0.5997 3.6907 22 6 1.8515 -0.1030 4.9334 23 1 1.1904 0.7450 5.0348 24 6 2.4058 -0.6900 6.0625 25 7 2.1268 -0.2122 7.2568 26 14 3.5487 -2.1571 5.8870 27 1 4.9486 -1.6806 5.7518 28 1 3.4338 -3.0207 7.0896 29 1 3.1723 -2.9362 4.6802 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3632 0.5144 -0.8897 33 1 3.1296 -0.7430 -1.2381 34 1 1.6959 -0.1936 -2.1397 35 1 1.9382 -2.7019 -2.0983 36 1 0.4146 -2.1348 -1.3673 37 1 3.5305 -3.9861 -1.8769 38 1 1.9735 -4.8486 -1.8758 39 1 5.4787 -4.9858 -1.0082 40 1 6.6740 -7.0541 -0.5728 41 1 5.4178 -9.1892 -0.3370 42 1 2.9721 -9.1772 -0.5576 43 1 0.4092 -2.1376 1.3632 44 1 1.9298 -2.7063 2.0992 45 1 1.8641 1.0639 2.4440 46 1 0.4697 -0.0367 2.5571 47 1 2.7356 -1.3615 3.5996 48 1 2.5138 -0.6226 8.0459 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133301376.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:27 Heat of formation + Delta-G solvation = -42.593322 kcal Electronic energy + Delta-G solvation = -29589.241646 eV Core-core repulsion = 25644.085500 eV Total energy + Delta-G solvation = -3945.156146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58333 -41.32329 -39.34227 -37.98786 -36.84088 -35.58214 -34.96445 -33.69460 -32.00388 -30.90914 -29.90325 -28.73393 -27.13511 -25.79952 -24.82984 -24.62079 -23.77638 -22.59808 -21.30477 -19.90633 -19.16774 -18.78583 -18.42394 -18.27261 -17.43132 -16.92808 -16.84154 -16.49931 -16.44808 -15.98306 -15.85568 -15.47949 -15.34652 -15.11820 -14.89858 -14.70360 -14.49749 -14.30886 -13.91456 -13.50194 -13.43703 -13.26206 -13.04111 -13.02566 -12.97508 -12.77183 -12.68209 -12.46290 -12.28887 -12.04555 -11.91712 -11.75827 -11.59680 -11.35468 -11.27339 -11.12773 -11.03149 -10.75617 -9.69671 -9.34168 -9.00752 -8.10023 -5.41691 -0.12654 0.90394 1.27917 1.32818 1.37472 1.38756 1.40996 1.94553 2.39404 2.67378 3.21992 3.30578 3.50069 3.61756 3.71154 3.75974 3.80610 3.96688 3.97338 4.05537 4.07929 4.18126 4.24096 4.32382 4.34289 4.48862 4.49732 4.52687 4.69594 4.74019 4.75990 4.88336 4.95918 5.02863 5.05380 5.14224 5.16805 5.21598 5.28329 5.36074 5.38068 5.44919 5.58453 5.61673 5.70322 6.01306 6.15241 6.25845 6.90164 6.97533 7.01212 7.78837 7.95058 9.11712 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.003867 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.372869 B = 7239.168229 C = 9267.362897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.085 0.915 4 C -0.119 4.119 5 C 0.093 3.907 6 N -0.600 5.600 7 C 0.490 3.510 8 O -0.587 6.587 9 C 0.077 3.923 10 N -0.483 5.483 11 C 0.133 3.867 12 C -0.232 4.232 13 C 0.007 3.993 14 C -0.286 4.286 15 C 0.498 3.502 16 O -0.611 6.611 17 C 0.123 3.877 18 C -0.090 4.090 19 H 0.067 0.933 20 C 0.159 3.841 21 N -0.762 5.762 22 C -0.231 4.231 23 H 0.064 0.936 24 C -0.055 4.055 25 N -0.979 5.979 26 Si 0.945 3.055 27 H -0.272 1.272 28 H -0.294 1.294 29 H -0.272 1.272 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.179 0.821 38 H 0.133 0.867 39 H 0.199 0.801 40 H 0.183 0.817 41 H 0.168 0.832 42 H 0.144 0.856 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.029 0.971 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.065 -8.167 -30.830 32.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.103 0.897 4 C -0.157 4.157 5 C -0.028 4.028 6 N -0.332 5.332 7 C 0.278 3.722 8 O -0.467 6.467 9 C -0.047 4.047 10 N -0.192 5.192 11 C 0.007 3.993 12 C -0.254 4.254 13 C -0.015 4.015 14 C -0.307 4.307 15 C 0.303 3.697 16 O -0.499 6.499 17 C 0.000 4.000 18 C -0.110 4.110 19 H 0.086 0.914 20 C 0.033 3.967 21 N -0.408 5.408 22 C -0.362 4.362 23 H 0.082 0.918 24 C -0.247 4.247 25 N -0.630 5.630 26 Si 0.773 3.227 27 H -0.198 1.198 28 H -0.220 1.220 29 H -0.198 1.198 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.196 0.804 38 H 0.151 0.849 39 H 0.216 0.784 40 H 0.200 0.800 41 H 0.185 0.815 42 H 0.161 0.839 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.194 0.806 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.327 -8.240 -30.248 32.195 hybrid contribution 0.156 -0.898 1.366 1.643 sum 7.483 -9.138 -28.882 31.203 Atomic orbital electron populations 1.21989 0.94729 1.01857 1.02450 1.21086 0.96397 0.99733 0.92736 0.89680 1.21947 1.01530 0.94073 0.98172 1.22293 1.02092 0.94495 0.83936 1.48200 1.56029 1.20411 1.08573 1.21478 0.77679 0.81152 0.91915 1.90769 1.55992 1.64460 1.35437 1.22094 1.03009 0.85019 0.94623 1.45143 1.08058 1.08895 1.57085 1.22716 0.81462 1.02616 0.92524 1.21200 1.02892 0.90994 1.10309 1.21894 0.92797 1.00303 0.86524 1.22129 0.96985 0.97100 1.14519 1.17626 0.87510 0.85362 0.79198 1.90898 1.15069 1.87103 1.56808 1.21541 0.99590 0.93065 0.85831 1.21680 1.00186 0.93513 0.95620 0.91428 1.20898 0.96084 0.95348 0.84349 1.42873 1.57729 1.37429 1.02721 1.19083 1.22498 1.10787 0.83861 0.91827 1.25335 1.02487 1.02004 0.94885 1.69849 1.50288 1.45052 0.97824 0.85570 0.79981 0.80320 0.76826 1.19784 1.22031 1.19797 0.92952 0.93781 0.90073 0.90672 0.86895 0.86344 0.89793 0.80406 0.84903 0.78409 0.80019 0.81458 0.83853 0.91334 0.93389 0.94847 0.95271 0.80629 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.11 71.98 0.58 -2.15 16 2 C -0.08 -1.46 2.71 -10.77 -0.03 -1.49 16 3 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 4 C -0.12 -1.24 5.63 30.67 0.17 -1.07 16 5 C 0.09 1.11 5.87 86.36 0.51 1.61 16 6 N -0.60 -14.10 2.97 -818.06 -2.43 -16.53 16 7 C 0.49 13.38 7.76 87.66 0.68 14.06 16 8 O -0.59 -23.40 15.84 -3.02 -0.05 -23.45 16 9 C 0.08 1.29 4.16 85.63 0.36 1.64 16 10 N -0.48 -10.17 2.07 -655.07 -1.36 -11.53 16 11 C 0.13 1.79 10.28 83.42 0.86 2.65 16 12 C -0.23 -2.69 10.01 22.08 0.22 -2.46 16 13 C 0.01 0.09 10.10 22.32 0.23 0.32 16 14 C -0.29 -6.60 9.99 22.40 0.22 -6.37 16 15 C 0.50 14.44 7.40 84.82 0.63 15.07 16 16 O -0.61 -22.96 16.64 -5.52 -0.09 -23.05 16 17 C 0.12 3.88 5.07 86.51 0.44 4.32 16 18 C -0.09 -2.56 2.16 -10.57 -0.02 -2.58 16 19 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 20 C 0.16 6.04 5.18 86.38 0.45 6.49 16 21 N -0.76 -37.68 5.18 -343.45 -1.78 -39.46 16 22 C -0.23 -13.77 10.47 84.03 0.88 -12.89 16 23 H 0.06 4.06 8.06 -2.91 -0.02 4.04 16 24 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 25 N -0.98 -64.84 13.97 21.65 0.30 -64.54 16 26 Si 0.94 49.64 27.74 68.60 1.90 51.54 16 27 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 28 H -0.29 -15.51 7.11 99.48 0.71 -14.80 16 29 H -0.27 -14.12 6.52 99.48 0.65 -13.47 16 30 H 0.05 0.99 4.97 -2.39 -0.01 0.98 16 31 H 0.04 0.98 6.57 -2.39 -0.02 0.96 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.12 0.53 5.93 -2.39 -0.01 0.51 16 36 H 0.08 0.97 6.69 -2.39 -0.02 0.95 16 37 H 0.18 0.77 7.56 -2.39 -0.02 0.76 16 38 H 0.13 2.18 7.19 -2.39 -0.02 2.16 16 39 H 0.20 1.01 8.04 -2.91 -0.02 0.99 16 40 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 41 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 43 H 0.07 2.19 6.69 -2.39 -0.02 2.18 16 44 H 0.05 2.00 6.23 -2.38 -0.01 1.98 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.03 1.13 6.73 -2.39 -0.02 1.12 16 47 H 0.36 17.91 4.78 -92.71 -0.44 17.46 16 48 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -95.97 376.34 3.61 -92.35 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.47 Total: 20.45 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.64 Total: 14.21 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -5.26 Total: -132.06 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.14 Total: -46.50 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.90 Total: 51.54 kcal Total: -95.97 3.61 -92.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133301376.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.759 kcal (2) G-P(sol) polarization free energy of solvation -95.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds