Wall clock time and date at job start Tue Mar 31 2020 18:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46983 * 2 1 4 4 C 1.50700 * 109.47372 * 240.00018 * 2 1 3 5 5 O 1.21281 * 119.99978 * 240.00140 * 4 2 1 6 6 N 1.34776 * 120.00156 * 59.99801 * 4 2 1 7 7 C 1.46500 * 120.00337 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47146 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.46910 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.47264 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00306 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47018 * 180.02562 * 11 10 9 13 13 O 1.21293 * 120.00331 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00040 * 179.97438 * 12 11 10 15 15 C 1.37092 * 120.00259 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00156 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00076 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99964 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00079 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47195 * 59.99291 * 19 17 15 21 21 H 1.48494 * 109.47072 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46872 * 299.99780 * 19 17 15 23 23 C 1.50696 * 109.47139 * 119.99685 * 2 1 3 24 24 C 1.38230 * 120.00346 * 239.99852 * 23 2 1 25 25 C 1.38235 * 120.00326 * 180.02562 * 24 23 2 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38239 * 120.00062 * 0.02871 * 26 25 24 28 28 C 1.38235 * 120.00123 * 359.97128 * 27 26 25 29 29 H 1.08998 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47256 * 300.00149 * 1 2 3 31 31 H 1.09002 * 109.47080 * 60.00170 * 1 2 3 32 32 H 0.97004 * 119.99519 * 0.02562 * 6 4 2 33 33 H 1.09000 * 109.46707 * 300.00135 * 7 6 4 34 34 H 1.09001 * 109.46688 * 60.00198 * 7 6 4 35 35 H 1.09008 * 109.47086 * 299.99862 * 8 7 6 36 36 H 1.09001 * 109.47350 * 59.99817 * 8 7 6 37 37 H 1.08991 * 109.47434 * 299.99698 * 9 8 7 38 38 H 1.08998 * 109.47491 * 60.00229 * 9 8 7 39 39 H 1.00904 * 110.99604 * 56.04471 * 10 9 8 40 40 H 1.09002 * 109.46985 * 300.00542 * 11 10 9 41 41 H 1.08997 * 109.46744 * 60.00068 * 11 10 9 42 42 H 0.97003 * 120.00072 * 0.02562 * 14 12 11 43 43 H 0.97002 * 120.00188 * 180.02562 * 18 17 15 44 44 H 1.08000 * 120.00356 * 359.97438 * 24 23 2 45 45 H 1.08000 * 120.00616 * 179.70664 * 25 24 23 46 46 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00087 * 180.02562 * 27 26 25 48 48 H 1.07999 * 120.00181 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1947 -0.9409 -3.6507 8 6 1.6853 -0.2192 -4.9000 9 6 2.1954 -0.9404 -6.1492 10 7 1.7058 -0.2479 -7.3487 11 6 2.1775 -0.9136 -8.5703 12 6 1.6569 -0.1762 -9.7771 13 8 0.9619 0.8074 -9.6336 14 7 1.9646 -0.6091 -11.0158 15 6 1.4915 0.0619 -12.1136 16 1 0.8719 0.9373 -11.9859 17 6 1.8082 -0.3847 -13.3908 18 7 2.5617 -1.4501 -13.5462 19 14 1.1642 0.5301 -14.8867 20 1 1.6604 1.9296 -14.8626 21 1 1.6413 -0.1426 -16.1215 22 1 -0.3206 0.5310 -14.8649 23 6 2.0323 -0.7103 1.2305 24 6 2.8270 -0.0386 2.1404 25 6 3.2883 -0.6903 3.2688 26 6 2.9543 -2.0137 3.4876 27 6 2.1595 -2.6856 2.5777 28 6 1.6983 -2.0338 1.4492 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1494 0.5389 -2.5435 33 1 3.2847 -0.9412 -3.6508 34 1 1.8309 -1.9684 -3.6505 35 1 0.5952 -0.2184 -4.9000 36 1 2.0493 0.8082 -4.8999 37 1 3.2853 -0.9408 -6.1489 38 1 1.8317 -1.9679 -6.1495 39 1 1.9753 0.7245 -7.3401 40 1 3.2673 -0.9131 -8.5867 41 1 1.8143 -1.9412 -8.5874 42 1 2.5207 -1.3955 -11.1306 43 1 2.7831 -1.7617 -14.4377 44 1 3.0884 0.9953 1.9693 45 1 3.9131 -0.1669 3.9773 46 1 3.3149 -2.5231 4.3690 47 1 1.8982 -3.7195 2.7488 48 1 1.0771 -2.5586 0.7385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171422764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:01 Heat of formation + Delta-G solvation = -61.380970 kcal Electronic energy + Delta-G solvation = -26408.310495 eV Core-core repulsion = 22462.339655 eV Total energy + Delta-G solvation = -3945.970840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.63692 -39.01740 -38.32038 -36.57736 -34.89568 -34.58505 -33.84031 -31.51523 -31.20345 -31.12516 -29.65491 -27.19758 -25.41946 -24.57480 -23.29101 -22.88155 -21.91681 -21.74115 -20.13122 -19.21691 -17.89588 -17.44058 -17.20692 -16.49065 -16.24222 -15.94489 -15.66058 -15.22560 -15.10086 -14.62440 -14.43902 -14.36192 -14.08569 -13.96739 -13.61990 -13.50708 -13.45353 -13.17727 -12.90918 -12.67412 -12.48074 -12.11370 -11.98520 -11.85873 -11.80070 -11.48078 -11.43502 -11.31306 -11.25393 -11.07468 -10.94516 -10.44622 -10.21881 -10.03958 -9.50571 -9.35125 -9.17015 -9.03398 -8.48202 -8.08626 -7.96611 -6.41992 -3.83019 1.02344 1.14127 2.35508 2.84261 3.19843 3.25647 3.29969 3.53374 3.90213 4.07915 4.12110 4.29268 4.31621 4.58592 4.64673 4.73560 4.79160 4.81683 4.84163 4.96181 5.03378 5.12517 5.16997 5.19406 5.25498 5.26872 5.38163 5.42179 5.49060 5.60911 5.62224 5.68864 5.74804 5.78512 5.95278 5.97576 6.01776 6.14052 6.16891 6.23031 6.26168 6.29164 6.69796 7.17879 7.18637 7.54534 7.62972 7.93323 8.05541 8.60774 9.17221 9.53749 10.05163 10.75628 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.044358 B = 0.001319 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.082302 B =21215.319663 C =21510.866334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 H 0.105 0.895 4 C 0.516 3.484 5 O -0.530 6.530 6 N -0.729 5.729 7 C 0.121 3.879 8 C -0.129 4.129 9 C 0.062 3.938 10 N -0.669 5.669 11 C 0.050 3.950 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.563 5.563 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.068 4.068 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.122 4.122 28 C -0.084 4.084 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.401 0.599 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.349 0.651 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 0.311 32.348 32.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 H 0.123 0.877 4 C 0.301 3.699 5 O -0.406 6.406 6 N -0.381 5.381 7 C -0.003 4.003 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.225 3.775 13 O -0.469 6.469 14 N -0.200 5.200 15 C -0.431 4.431 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.069 4.069 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.140 4.140 28 C -0.102 4.102 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.236 0.764 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.168 0.832 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.355 -0.175 32.308 32.310 hybrid contribution 0.853 0.485 -1.028 1.421 sum 0.498 0.309 31.280 31.285 Atomic orbital electron populations 1.21810 0.91773 1.03247 1.03089 1.20307 0.97872 1.00266 0.90904 0.87728 1.20481 0.80280 0.84732 0.84397 1.90740 1.37213 1.25989 1.86633 1.46012 1.54069 1.32345 1.05652 1.21330 0.99380 0.96539 0.83085 1.21742 1.02565 0.99736 0.92658 1.21828 0.96935 0.98689 0.89342 1.60069 1.63527 1.06689 0.99885 1.21670 0.97501 0.99036 0.90010 1.19807 0.86015 0.87550 0.84078 1.90516 1.41892 1.28621 1.85844 1.41857 1.46013 1.27811 1.04273 1.19663 1.29260 1.10700 0.83454 0.87966 1.25261 0.96920 0.96568 0.99115 1.69604 1.36969 1.23529 1.24181 0.85914 0.79198 0.79238 0.79842 1.19923 1.20966 1.19871 1.19289 0.98387 0.94478 0.94709 1.21004 0.97676 0.99829 0.94580 1.21078 1.00355 0.95054 0.97704 1.21155 0.98439 0.94849 0.99399 1.21135 0.98367 0.99887 0.94633 1.20914 0.98996 0.93785 0.96505 0.91724 0.91052 0.91504 0.76425 0.91483 0.91228 0.90107 0.91268 0.95254 0.90785 0.83210 0.93820 0.89544 0.77433 0.91805 0.86170 0.86115 0.86226 0.86118 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.90 37.16 0.33 -0.39 16 2 C -0.07 -0.50 2.90 -92.93 -0.27 -0.77 16 3 H 0.10 0.52 7.88 -51.93 -0.41 0.11 16 4 C 0.52 4.96 7.02 -10.99 -0.08 4.89 16 5 O -0.53 -7.30 15.11 5.56 0.08 -7.21 16 6 N -0.73 -5.68 5.45 -60.30 -0.33 -6.01 16 7 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16 8 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16 9 C 0.06 0.72 5.69 -3.82 -0.02 0.70 16 10 N -0.67 -10.50 6.13 -115.06 -0.71 -11.20 16 11 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 12 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 13 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 14 N -0.56 -14.30 5.29 -10.97 -0.06 -14.36 16 15 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 16 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 17 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 19 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 C -0.07 -0.59 4.40 -104.62 -0.46 -1.05 16 24 C -0.11 -0.88 9.67 -39.59 -0.38 -1.27 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 26 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 27 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 28 C -0.08 -0.78 7.93 -39.58 -0.31 -1.09 16 29 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.25 7.56 -51.93 -0.39 -0.14 16 32 H 0.40 2.12 7.89 -40.82 -0.32 1.79 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.35 5.59 8.43 -39.29 -0.33 5.25 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.12 0.69 7.95 -52.49 -0.42 0.28 16 45 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 48 H 0.12 1.09 7.52 -52.49 -0.39 0.69 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -34.39 404.19 -9.60 -43.99 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -7.56 Total: 12.45 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.92 Total: -0.17 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.37 Total: -55.38 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.39 -9.60 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171422764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.386 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds