Wall clock time and date at job start Tue Mar 31 2020 18:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46983 * 2 1 4 4 C 1.50700 * 109.47372 * 240.00018 * 2 1 3 5 5 O 1.21281 * 119.99978 * 240.00140 * 4 2 1 6 6 N 1.34776 * 120.00156 * 59.99801 * 4 2 1 7 7 C 1.46500 * 120.00337 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47146 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.46910 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.47264 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00306 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47018 * 180.02562 * 11 10 9 13 13 O 1.21293 * 120.00331 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00040 * 179.97438 * 12 11 10 15 15 C 1.37092 * 120.00259 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00156 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00076 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99964 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00079 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47195 * 59.99291 * 19 17 15 21 21 H 1.48494 * 109.47072 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46872 * 299.99780 * 19 17 15 23 23 C 1.50696 * 109.47139 * 119.99685 * 2 1 3 24 24 C 1.38230 * 120.00346 * 239.99852 * 23 2 1 25 25 C 1.38235 * 120.00326 * 180.02562 * 24 23 2 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38239 * 120.00062 * 0.02871 * 26 25 24 28 28 C 1.38235 * 120.00123 * 359.97128 * 27 26 25 29 29 H 1.08998 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47256 * 300.00149 * 1 2 3 31 31 H 1.09002 * 109.47080 * 60.00170 * 1 2 3 32 32 H 0.97004 * 119.99519 * 0.02562 * 6 4 2 33 33 H 1.09000 * 109.46707 * 300.00135 * 7 6 4 34 34 H 1.09001 * 109.46688 * 60.00198 * 7 6 4 35 35 H 1.09008 * 109.47086 * 299.99862 * 8 7 6 36 36 H 1.09001 * 109.47350 * 59.99817 * 8 7 6 37 37 H 1.08991 * 109.47434 * 299.99698 * 9 8 7 38 38 H 1.08998 * 109.47491 * 60.00229 * 9 8 7 39 39 H 1.00904 * 110.99604 * 56.04471 * 10 9 8 40 40 H 1.09002 * 109.46985 * 300.00542 * 11 10 9 41 41 H 1.08997 * 109.46744 * 60.00068 * 11 10 9 42 42 H 0.97003 * 120.00072 * 0.02562 * 14 12 11 43 43 H 0.97002 * 120.00188 * 180.02562 * 18 17 15 44 44 H 1.08000 * 120.00356 * 359.97438 * 24 23 2 45 45 H 1.08000 * 120.00616 * 179.70664 * 25 24 23 46 46 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00087 * 180.02562 * 27 26 25 48 48 H 1.07999 * 120.00181 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1947 -0.9409 -3.6507 8 6 1.6853 -0.2192 -4.9000 9 6 2.1954 -0.9404 -6.1492 10 7 1.7058 -0.2479 -7.3487 11 6 2.1775 -0.9136 -8.5703 12 6 1.6569 -0.1762 -9.7771 13 8 0.9619 0.8074 -9.6336 14 7 1.9646 -0.6091 -11.0158 15 6 1.4915 0.0619 -12.1136 16 1 0.8719 0.9373 -11.9859 17 6 1.8082 -0.3847 -13.3908 18 7 2.5617 -1.4501 -13.5462 19 14 1.1642 0.5301 -14.8867 20 1 1.6604 1.9296 -14.8626 21 1 1.6413 -0.1426 -16.1215 22 1 -0.3206 0.5310 -14.8649 23 6 2.0323 -0.7103 1.2305 24 6 2.8270 -0.0386 2.1404 25 6 3.2883 -0.6903 3.2688 26 6 2.9543 -2.0137 3.4876 27 6 2.1595 -2.6856 2.5777 28 6 1.6983 -2.0338 1.4492 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1494 0.5389 -2.5435 33 1 3.2847 -0.9412 -3.6508 34 1 1.8309 -1.9684 -3.6505 35 1 0.5952 -0.2184 -4.9000 36 1 2.0493 0.8082 -4.8999 37 1 3.2853 -0.9408 -6.1489 38 1 1.8317 -1.9679 -6.1495 39 1 1.9753 0.7245 -7.3401 40 1 3.2673 -0.9131 -8.5867 41 1 1.8143 -1.9412 -8.5874 42 1 2.5207 -1.3955 -11.1306 43 1 2.7831 -1.7617 -14.4377 44 1 3.0884 0.9953 1.9693 45 1 3.9131 -0.1669 3.9773 46 1 3.3149 -2.5231 4.3690 47 1 1.8982 -3.7195 2.7488 48 1 1.0771 -2.5586 0.7385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171422764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:00 Heat of formation + Delta-G solvation = -85.889504 kcal Electronic energy + Delta-G solvation = -26409.373265 eV Core-core repulsion = 22462.339655 eV Total energy + Delta-G solvation = -3947.033609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.31457 -40.16258 -39.64071 -37.63840 -36.10984 -35.63936 -35.16333 -33.28988 -32.33725 -31.77159 -30.24506 -28.55381 -26.63989 -25.62492 -24.43570 -23.46852 -22.65841 -22.52942 -21.11352 -20.74467 -19.89890 -18.08731 -17.94980 -17.72351 -17.23128 -16.98273 -16.65818 -16.42109 -16.04008 -15.97070 -15.76933 -15.38392 -15.10213 -15.05802 -14.56385 -14.55696 -14.26584 -14.15928 -13.75001 -13.55685 -13.38531 -13.21970 -13.14848 -12.99853 -12.84669 -12.69474 -12.50545 -12.42710 -12.41770 -12.11864 -11.88423 -11.82599 -11.78366 -11.49867 -10.80904 -10.35434 -10.09729 -10.01942 -9.76520 -9.61575 -9.34161 -8.46465 -5.95577 0.44054 0.54728 1.40407 1.42402 1.53431 1.63040 2.04943 2.15580 2.30304 2.90638 2.98937 3.20838 3.52613 3.57250 3.77899 4.00985 4.02117 4.14136 4.15727 4.20613 4.24147 4.29122 4.33436 4.36716 4.48439 4.56593 4.58605 4.63270 4.69126 4.70633 4.77991 4.83861 4.92925 5.12422 5.16661 5.18054 5.20874 5.26189 5.40727 5.44646 5.58788 5.65051 5.70240 5.88013 6.09259 6.14116 6.40934 6.55710 6.59842 7.12224 7.25175 7.55910 8.10901 8.70638 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.044358 B = 0.001319 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.082302 B =21215.319663 C =21510.866334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 H 0.129 0.871 4 C 0.513 3.487 5 O -0.577 6.577 6 N -0.717 5.717 7 C 0.127 3.873 8 C -0.114 4.114 9 C 0.062 3.938 10 N -0.682 5.682 11 C 0.064 3.936 12 C 0.437 3.563 13 O -0.623 6.623 14 N -0.573 5.573 15 C -0.337 4.337 16 H 0.080 0.920 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.082 4.082 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.105 4.105 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.416 0.584 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.346 0.654 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 1.143 33.119 33.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 H 0.147 0.853 4 C 0.300 3.700 5 O -0.456 6.456 6 N -0.370 5.370 7 C 0.003 3.997 8 C -0.153 4.153 9 C -0.067 4.067 10 N -0.315 5.315 11 C -0.068 4.068 12 C 0.224 3.776 13 O -0.510 6.510 14 N -0.210 5.210 15 C -0.467 4.467 16 H 0.098 0.902 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.197 1.197 23 C -0.082 4.082 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.155 4.155 28 C -0.123 4.123 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.164 0.836 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.157 0.843 47 H 0.148 0.852 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.179 0.660 33.089 33.096 hybrid contribution 0.807 0.209 -1.198 1.460 sum 0.628 0.868 31.891 31.909 Atomic orbital electron populations 1.21812 0.90406 1.02883 1.04452 1.20351 0.98877 1.00746 0.88747 0.85306 1.20995 0.79442 0.84152 0.85400 1.90719 1.39476 1.28132 1.87308 1.45910 1.53653 1.32494 1.04910 1.21161 0.98867 0.96206 0.83469 1.21582 1.02392 0.99861 0.91420 1.21909 0.97637 0.98713 0.88446 1.60068 1.64282 1.06751 1.00396 1.21533 0.98533 0.98768 0.88011 1.20881 0.84619 0.87002 0.85090 1.90482 1.43417 1.30453 1.86608 1.41934 1.46456 1.28003 1.04601 1.19658 1.30678 1.11176 0.85142 0.90219 1.26046 0.96678 0.97194 1.01250 1.69666 1.37143 1.24161 1.25135 0.84983 0.78548 0.78140 0.76635 1.19614 1.19518 1.19699 1.19546 0.98675 0.94443 0.95570 1.21331 0.97311 1.00914 0.94529 1.21435 1.00234 0.95145 0.98029 1.21457 0.98138 0.95263 0.99871 1.21377 0.98768 1.00618 0.94784 1.21007 0.99811 0.94572 0.96915 0.92980 0.89973 0.89821 0.74701 0.92250 0.92184 0.90134 0.90322 0.94188 0.90434 0.83576 0.91588 0.87894 0.76980 0.91284 0.84114 0.83954 0.84310 0.85181 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.90 71.98 0.64 -0.56 16 2 C -0.07 -0.82 2.90 -12.29 -0.04 -0.86 16 3 H 0.13 0.96 7.88 -2.39 -0.02 0.94 16 4 C 0.51 9.53 7.02 87.66 0.62 10.15 16 5 O -0.58 -16.14 15.11 -3.03 -0.05 -16.18 16 6 N -0.72 -10.17 5.45 -463.07 -2.52 -12.69 16 7 C 0.13 2.14 5.67 86.38 0.49 2.63 16 8 C -0.11 -1.87 5.59 30.59 0.17 -1.70 16 9 C 0.06 1.32 5.69 86.30 0.49 1.81 16 10 N -0.68 -20.45 6.13 -517.95 -3.17 -23.62 16 11 C 0.06 2.16 6.17 85.55 0.53 2.69 16 12 C 0.44 20.69 7.82 87.65 0.69 21.37 16 13 O -0.62 -34.28 15.78 -3.07 -0.05 -34.32 16 14 N -0.57 -29.40 5.29 -306.99 -1.62 -31.03 16 15 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 16 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 17 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 18 N -0.92 -49.65 13.05 21.66 0.28 -49.36 16 19 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 C -0.08 -1.37 4.40 -19.87 -0.09 -1.45 16 24 C -0.12 -1.76 9.67 22.27 0.22 -1.55 16 25 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 27 C -0.14 -2.34 10.05 22.27 0.22 -2.11 16 28 C -0.10 -2.00 7.93 22.27 0.18 -1.83 16 29 H 0.05 0.59 7.39 -2.39 -0.02 0.57 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.43 7.56 -2.39 -0.02 0.41 16 32 H 0.42 3.44 7.89 -92.71 -0.73 2.71 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.35 10.70 8.43 -89.69 -0.76 9.94 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 43 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.14 1.31 7.95 -2.91 -0.02 1.29 16 45 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 46 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 47 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 48 H 0.11 2.16 7.52 -2.91 -0.02 2.14 16 Total: -1.00 -75.33 404.19 -0.50 -75.83 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -1.24 Total: 39.74 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 5.84 Total: 6.89 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -7.04 Total: -116.71 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.09 Total: -50.51 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -75.33 -0.50 -75.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171422764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.061 kcal (2) G-P(sol) polarization free energy of solvation -75.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds