Wall clock time and date at job start Tue Mar 31 2020 17:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47578 * 2 1 4 4 O 1.42904 * 109.47473 * 120.00233 * 2 1 3 5 5 C 1.42902 * 113.99457 * 270.00182 * 4 2 1 6 6 C 1.50700 * 109.46591 * 179.97438 * 5 4 2 7 7 C 1.38655 * 120.79193 * 269.71780 * 6 5 4 8 8 C 1.38204 * 119.15896 * 179.75589 * 7 6 5 9 9 N 1.31868 * 120.76773 * 0.53216 * 8 7 6 10 10 C 1.31873 * 121.72673 * 359.74309 * 9 8 7 11 11 C 1.38207 * 120.76042 * 359.97391 * 10 9 8 12 12 C 1.50701 * 109.47147 * 240.00245 * 2 1 3 13 13 O 1.21282 * 119.99889 * 244.99866 * 12 2 1 14 14 N 1.34777 * 120.00151 * 65.00031 * 12 2 1 15 15 C 1.47421 * 125.64867 * 359.97324 * 14 12 2 16 16 C 1.54913 * 104.83061 * 155.91445 * 15 14 12 17 17 C 1.55153 * 101.58099 * 37.01308 * 16 15 14 18 18 H 1.09001 * 110.71694 * 205.95306 * 17 16 15 19 19 N 1.46504 * 110.71944 * 82.85847 * 17 16 15 20 20 C 1.36934 * 119.99567 * 88.84454 * 19 17 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99987 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00079 * 24 22 20 28 28 C 1.47493 * 125.59150 * 180.02562 * 14 12 2 29 29 H 1.08999 * 109.95989 * 300.32838 * 28 14 12 30 30 C 1.52998 * 110.02954 * 61.64001 * 28 14 12 31 31 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47268 * 300.00112 * 1 2 3 33 33 H 1.09001 * 109.47189 * 59.99772 * 1 2 3 34 34 H 1.08992 * 109.47349 * 299.98868 * 5 4 2 35 35 H 1.08995 * 109.47314 * 60.00355 * 5 4 2 36 36 H 1.07997 * 120.41814 * 0.02562 * 7 6 5 37 37 H 1.08007 * 119.61461 * 180.24931 * 8 7 6 38 38 H 1.07993 * 119.62035 * 180.02562 * 10 9 8 39 39 H 1.08000 * 120.41596 * 180.02562 * 11 10 9 40 40 H 1.09006 * 110.36319 * 37.07971 * 15 14 12 41 41 H 1.08995 * 110.46261 * 274.80375 * 15 14 12 42 42 H 1.08993 * 111.00346 * 278.93647 * 16 15 14 43 43 H 1.08999 * 111.00069 * 155.08857 * 16 15 14 44 44 H 0.97000 * 119.99825 * 268.83635 * 19 17 16 45 45 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 46 46 H 1.09008 * 109.46768 * 177.60614 * 30 28 14 47 47 H 1.08996 * 109.47580 * 297.60707 * 30 28 14 48 48 H 1.09007 * 109.47362 * 57.61486 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 0.1830 2.2940 6 6 2.7003 -0.6284 3.4613 7 6 1.8130 -1.2039 4.3579 8 6 2.3085 -1.9456 5.4136 9 7 3.6078 -2.0996 5.5786 10 6 4.4807 -1.5623 4.7490 11 6 4.0590 -0.8124 3.6674 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7466 -1.1215 14 7 1.7919 -0.1941 -2.4520 15 6 1.0536 1.0517 -2.7282 16 6 1.5680 1.5188 -4.1128 17 6 1.7454 0.1662 -4.8517 18 1 2.4991 0.2504 -5.6347 19 7 0.4701 -0.2909 -5.4094 20 6 0.0958 0.0957 -6.6686 21 1 0.7404 0.7379 -7.2504 22 6 -1.1123 -0.3378 -7.1973 23 7 -1.8977 -1.1209 -6.4885 24 14 -1.6234 0.1901 -8.9147 25 1 -2.9443 -0.4038 -9.2426 26 1 -1.7186 1.6711 -8.9695 27 1 -0.6132 -0.2777 -9.8975 28 6 2.2235 -0.7837 -3.7333 29 1 3.3100 -0.8671 -3.7572 30 6 1.5885 -2.1637 -3.9154 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.9319 0.9512 2.0450 35 1 1.2538 0.6546 2.5589 36 1 0.7480 -1.0779 4.2305 37 1 1.6238 -2.4005 6.1141 38 1 5.5373 -1.7106 4.9163 39 1 4.7788 -0.3752 2.9912 40 1 1.2762 1.8009 -1.9683 41 1 -0.0184 0.8587 -2.7671 42 1 2.5202 2.0411 -4.0199 43 1 0.8287 2.1437 -4.6137 44 1 -0.1089 -0.8675 -4.8868 45 1 -1.6325 -1.3947 -5.5965 46 1 1.8793 -2.5725 -4.8832 47 1 1.9306 -2.8286 -3.1224 48 1 0.5031 -2.0730 -3.8707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179561137.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:46 Heat of formation + Delta-G solvation = -18.162343 kcal Electronic energy + Delta-G solvation = -28764.719365 eV Core-core repulsion = 24820.622626 eV Total energy + Delta-G solvation = -3944.096739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56657 -40.21774 -38.45723 -37.13059 -34.39312 -33.75442 -32.24878 -31.53168 -30.99936 -30.66989 -28.54067 -27.22689 -25.30023 -24.54638 -23.78815 -23.50591 -22.37258 -22.08189 -20.11192 -18.74553 -17.84477 -17.44425 -16.99346 -16.80371 -16.55522 -15.93235 -15.89166 -15.48670 -15.13668 -14.85289 -14.16527 -14.04828 -13.94671 -13.74328 -13.64168 -13.45704 -13.23706 -12.97245 -12.63200 -12.46675 -12.41829 -12.21117 -11.91561 -11.80355 -11.47371 -11.33971 -11.29199 -11.04296 -10.74236 -10.33353 -10.27673 -10.20832 -10.06464 -10.00175 -9.81285 -9.46476 -9.38914 -9.24971 -9.01084 -8.45431 -7.15107 -6.18480 -3.20066 0.79728 0.82431 2.67722 2.76791 3.41890 3.46767 3.49662 3.67430 3.77839 4.15085 4.29779 4.33466 4.49394 4.59426 4.64911 4.70599 4.77626 4.83179 4.92346 4.95822 5.00404 5.13259 5.27695 5.28663 5.39523 5.41979 5.45543 5.47723 5.57946 5.60223 5.61766 5.68498 5.78038 5.95045 5.95487 5.98274 6.18925 6.26705 6.35257 6.35698 6.48543 6.56926 6.65811 6.79511 6.84743 7.64009 7.69047 7.72619 8.30466 8.66480 9.11517 9.98022 10.12466 11.28872 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029485 B = 0.002166 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.412828 B =12923.452260 C =13044.129578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.076 3.924 3 H 0.084 0.916 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.043 4.043 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.528 3.472 13 O -0.524 6.524 14 N -0.608 5.608 15 C 0.102 3.898 16 C -0.159 4.159 17 C 0.177 3.823 18 H 0.070 0.930 19 N -0.725 5.725 20 C -0.335 4.335 21 H 0.066 0.934 22 C -0.042 4.042 23 N -0.940 5.940 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.128 3.872 29 H 0.073 0.927 30 C -0.149 4.149 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.371 0.629 45 H 0.254 0.746 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.443 6.611 19.934 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 H 0.102 0.898 4 O -0.267 6.267 5 C 0.021 3.979 6 C -0.051 4.051 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.061 4.061 11 C -0.169 4.169 12 C 0.314 3.686 13 O -0.400 6.400 14 N -0.343 5.343 15 C -0.020 4.020 16 C -0.200 4.200 17 C 0.065 3.935 18 H 0.088 0.912 19 N -0.369 5.369 20 C -0.466 4.466 21 H 0.084 0.916 22 C -0.240 4.240 23 N -0.585 5.585 24 Si 0.910 3.090 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.222 1.222 28 C 0.025 3.975 29 H 0.091 0.909 30 C -0.207 4.207 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.208 0.792 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.040 5.310 19.462 21.716 hybrid contribution 0.608 0.911 0.570 1.234 sum 8.648 6.220 20.032 22.688 Atomic orbital electron populations 1.22307 0.93277 1.04235 1.03474 1.21871 0.95346 0.96004 0.85263 0.89812 1.88125 1.86626 1.33490 1.18438 1.21409 1.00103 0.91658 0.84706 1.19971 0.93700 0.96741 0.94680 1.22097 1.01051 0.98194 0.95748 1.22780 0.91980 0.95308 0.96095 1.67669 1.03384 1.19592 1.28617 1.22783 0.99727 0.93091 0.90489 1.22114 0.95876 0.99881 0.99052 1.19846 0.80250 0.85413 0.83045 1.90702 1.40300 1.23117 1.85841 1.48710 1.55278 1.25263 1.05096 1.22389 0.96657 0.85062 0.97912 1.23506 1.00953 1.00591 0.94969 1.21126 0.90205 0.90021 0.92131 0.91186 1.42565 1.18455 1.59228 1.16623 1.20024 1.05186 1.28887 0.92470 0.91604 1.25774 0.93473 0.98852 1.05887 1.70904 1.38846 1.36729 1.12004 0.83244 0.76143 0.75263 0.74318 1.21078 1.22253 1.22233 1.22093 0.98485 0.94650 0.82258 0.90896 1.21914 1.01262 0.95591 1.01937 0.90937 0.91375 0.90114 0.91802 0.91673 0.84548 0.82527 0.82516 0.84560 0.91742 0.90951 0.91881 0.89294 0.79250 0.93435 0.91331 0.92434 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.39 37.15 0.35 -1.52 16 2 C 0.08 0.92 2.48 -27.89 -0.07 0.86 16 3 H 0.08 0.79 7.26 -51.93 -0.38 0.41 16 4 O -0.35 -4.57 9.51 -55.09 -0.52 -5.10 16 5 C 0.10 0.89 5.92 36.01 0.21 1.10 16 6 C -0.04 -0.41 5.55 -104.32 -0.58 -0.99 16 7 C -0.15 -1.34 9.82 -39.44 -0.39 -1.72 16 8 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 9 N -0.48 -5.18 10.36 -13.25 -0.14 -5.31 16 10 C 0.10 0.89 11.18 -17.54 -0.20 0.70 16 11 C -0.15 -1.38 9.82 -39.44 -0.39 -1.77 16 12 C 0.53 8.52 7.04 -10.98 -0.08 8.44 16 13 O -0.52 -10.52 15.58 -14.31 -0.22 -10.75 16 14 N -0.61 -9.43 3.08 -162.67 -0.50 -9.93 16 15 C 0.10 1.40 5.32 -2.53 -0.01 1.39 16 16 C -0.16 -2.42 6.77 -24.58 -0.17 -2.59 16 17 C 0.18 3.25 3.46 -66.10 -0.23 3.02 16 18 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 19 N -0.72 -16.61 4.60 -51.65 -0.24 -16.85 16 20 C -0.33 -8.76 9.97 -15.06 -0.15 -8.91 16 21 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 22 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 23 N -0.94 -27.94 13.70 55.49 0.76 -27.18 16 24 Si 1.08 24.86 29.92 -169.99 -5.09 19.78 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.30 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 28 C 0.13 2.21 3.45 -66.70 -0.23 1.98 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 C -0.15 -2.78 8.48 37.16 0.32 -2.47 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 33 H 0.08 0.85 5.56 -51.93 -0.29 0.57 16 34 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 35 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.06 0.68 7.33 -51.93 -0.38 0.30 16 41 H 0.07 1.07 7.16 -51.93 -0.37 0.70 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.37 8.96 4.41 -40.82 -0.18 8.78 16 45 H 0.25 7.47 6.77 -40.82 -0.28 7.20 16 46 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 47 H 0.06 1.10 6.93 -51.93 -0.36 0.74 16 48 H 0.06 1.21 6.21 -51.92 -0.32 0.89 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -33.98 387.65 -9.23 -43.21 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.22 Total: 9.37 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.90 Total: -3.08 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.12 Total: -59.28 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.75 Total: -15.84 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.98 -9.23 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179561137.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.050 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds