Wall clock time and date at job start Tue Mar 31 2020 17:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47578 * 2 1 4 4 O 1.42904 * 109.47473 * 120.00233 * 2 1 3 5 5 C 1.42902 * 113.99457 * 270.00182 * 4 2 1 6 6 C 1.50700 * 109.46591 * 179.97438 * 5 4 2 7 7 C 1.38655 * 120.79193 * 269.71780 * 6 5 4 8 8 C 1.38204 * 119.15896 * 179.75589 * 7 6 5 9 9 N 1.31868 * 120.76773 * 0.53216 * 8 7 6 10 10 C 1.31873 * 121.72673 * 359.74309 * 9 8 7 11 11 C 1.38207 * 120.76042 * 359.97391 * 10 9 8 12 12 C 1.50701 * 109.47147 * 240.00245 * 2 1 3 13 13 O 1.21282 * 119.99889 * 244.99866 * 12 2 1 14 14 N 1.34777 * 120.00151 * 65.00031 * 12 2 1 15 15 C 1.47421 * 125.64867 * 359.97324 * 14 12 2 16 16 C 1.54913 * 104.83061 * 155.91445 * 15 14 12 17 17 C 1.55153 * 101.58099 * 37.01308 * 16 15 14 18 18 H 1.09001 * 110.71694 * 205.95306 * 17 16 15 19 19 N 1.46504 * 110.71944 * 82.85847 * 17 16 15 20 20 C 1.36934 * 119.99567 * 88.84454 * 19 17 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99987 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00079 * 24 22 20 28 28 C 1.47493 * 125.59150 * 180.02562 * 14 12 2 29 29 H 1.08999 * 109.95989 * 300.32838 * 28 14 12 30 30 C 1.52998 * 110.02954 * 61.64001 * 28 14 12 31 31 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47268 * 300.00112 * 1 2 3 33 33 H 1.09001 * 109.47189 * 59.99772 * 1 2 3 34 34 H 1.08992 * 109.47349 * 299.98868 * 5 4 2 35 35 H 1.08995 * 109.47314 * 60.00355 * 5 4 2 36 36 H 1.07997 * 120.41814 * 0.02562 * 7 6 5 37 37 H 1.08007 * 119.61461 * 180.24931 * 8 7 6 38 38 H 1.07993 * 119.62035 * 180.02562 * 10 9 8 39 39 H 1.08000 * 120.41596 * 180.02562 * 11 10 9 40 40 H 1.09006 * 110.36319 * 37.07971 * 15 14 12 41 41 H 1.08995 * 110.46261 * 274.80375 * 15 14 12 42 42 H 1.08993 * 111.00346 * 278.93647 * 16 15 14 43 43 H 1.08999 * 111.00069 * 155.08857 * 16 15 14 44 44 H 0.97000 * 119.99825 * 268.83635 * 19 17 16 45 45 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 46 46 H 1.09008 * 109.46768 * 177.60614 * 30 28 14 47 47 H 1.08996 * 109.47580 * 297.60707 * 30 28 14 48 48 H 1.09007 * 109.47362 * 57.61486 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 0.1830 2.2940 6 6 2.7003 -0.6284 3.4613 7 6 1.8130 -1.2039 4.3579 8 6 2.3085 -1.9456 5.4136 9 7 3.6078 -2.0996 5.5786 10 6 4.4807 -1.5623 4.7490 11 6 4.0590 -0.8124 3.6674 12 6 2.0323 -0.7104 -1.2305 13 8 2.6529 -1.7466 -1.1215 14 7 1.7919 -0.1941 -2.4520 15 6 1.0536 1.0517 -2.7282 16 6 1.5680 1.5188 -4.1128 17 6 1.7454 0.1662 -4.8517 18 1 2.4991 0.2504 -5.6347 19 7 0.4701 -0.2909 -5.4094 20 6 0.0958 0.0957 -6.6686 21 1 0.7404 0.7379 -7.2504 22 6 -1.1123 -0.3378 -7.1973 23 7 -1.8977 -1.1209 -6.4885 24 14 -1.6234 0.1901 -8.9147 25 1 -2.9443 -0.4038 -9.2426 26 1 -1.7186 1.6711 -8.9695 27 1 -0.6132 -0.2777 -9.8975 28 6 2.2235 -0.7837 -3.7333 29 1 3.3100 -0.8671 -3.7572 30 6 1.5885 -2.1637 -3.9154 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.9319 0.9512 2.0450 35 1 1.2538 0.6546 2.5589 36 1 0.7480 -1.0779 4.2305 37 1 1.6238 -2.4005 6.1141 38 1 5.5373 -1.7106 4.9163 39 1 4.7788 -0.3752 2.9912 40 1 1.2762 1.8009 -1.9683 41 1 -0.0184 0.8587 -2.7671 42 1 2.5202 2.0411 -4.0199 43 1 0.8287 2.1437 -4.6137 44 1 -0.1089 -0.8675 -4.8868 45 1 -1.6325 -1.3947 -5.5965 46 1 1.8793 -2.5725 -4.8832 47 1 1.9306 -2.8286 -3.1224 48 1 0.5031 -2.0730 -3.8707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179561137.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:45 Heat of formation + Delta-G solvation = -39.439910 kcal Electronic energy + Delta-G solvation = -28765.642030 eV Core-core repulsion = 24820.622626 eV Total energy + Delta-G solvation = -3945.019404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58593 -41.10780 -39.55177 -38.35482 -36.10540 -34.58338 -33.62129 -32.41358 -32.17448 -31.87896 -30.13169 -27.92704 -26.75324 -25.71236 -25.36618 -24.44387 -23.32462 -22.97704 -21.47511 -20.02380 -19.51363 -18.62994 -17.94957 -17.61423 -17.48625 -17.13356 -16.70049 -16.64488 -16.41735 -15.99131 -15.65817 -15.27092 -14.92288 -14.81898 -14.66319 -14.59058 -14.33267 -14.08385 -14.00926 -13.66013 -13.49492 -13.25766 -13.08363 -13.03155 -12.79506 -12.55246 -12.48087 -12.33943 -12.30689 -11.96601 -11.77968 -11.75224 -11.23089 -11.09541 -10.89947 -10.78414 -10.52086 -10.49575 -10.11579 -9.75269 -9.09338 -8.33456 -5.28366 0.10511 0.17159 1.47711 1.61751 1.66913 1.70842 1.86522 2.60405 2.73971 3.01945 3.30890 3.43712 3.55757 3.63898 3.69465 3.70574 3.74244 3.86588 3.87308 3.97014 4.08859 4.12804 4.17645 4.21514 4.27964 4.35655 4.40345 4.44215 4.58206 4.65021 4.66882 4.68278 4.72645 4.83818 4.85914 4.95865 4.96185 5.11581 5.14758 5.19184 5.28299 5.31709 5.34218 5.67100 5.72653 5.96867 6.47633 6.53359 6.97274 7.06747 7.11918 8.02185 8.14354 9.17414 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029485 B = 0.002166 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.412828 B =12923.452260 C =13044.129578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.084 3.916 3 H 0.122 0.878 4 O -0.380 6.380 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.155 4.155 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.159 4.159 12 C 0.520 3.480 13 O -0.572 6.572 14 N -0.605 5.605 15 C 0.105 3.895 16 C -0.146 4.146 17 C 0.168 3.832 18 H 0.069 0.931 19 N -0.736 5.736 20 C -0.322 4.322 21 H 0.072 0.928 22 C -0.105 4.105 23 N -0.977 5.977 24 Si 1.125 2.875 25 H -0.300 1.300 26 H -0.275 1.275 27 H -0.282 1.282 28 C 0.132 3.868 29 H 0.081 0.919 30 C -0.136 4.136 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.179 0.821 38 H 0.176 0.824 39 H 0.149 0.851 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.363 0.637 45 H 0.242 0.758 46 H 0.057 0.943 47 H 0.049 0.951 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 9.333 20.791 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 H 0.140 0.860 4 O -0.299 6.299 5 C 0.019 3.981 6 C -0.068 4.068 7 C -0.175 4.175 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.178 4.178 12 C 0.309 3.691 13 O -0.451 6.451 14 N -0.339 5.339 15 C -0.017 4.017 16 C -0.187 4.187 17 C 0.058 3.942 18 H 0.087 0.913 19 N -0.379 5.379 20 C -0.453 4.453 21 H 0.090 0.910 22 C -0.296 4.296 23 N -0.626 5.626 24 Si 0.951 3.049 25 H -0.226 1.226 26 H -0.201 1.201 27 H -0.208 1.208 28 C 0.028 3.972 29 H 0.099 0.901 30 C -0.195 4.195 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.174 0.826 37 H 0.196 0.804 38 H 0.193 0.807 39 H 0.167 0.833 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.197 0.803 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.712 8.090 20.345 23.564 hybrid contribution 0.523 0.034 0.367 0.639 sum 9.235 8.125 20.711 24.088 Atomic orbital electron populations 1.22296 0.92244 1.03150 1.05132 1.21877 0.95820 0.96781 0.83154 0.86032 1.88091 1.86888 1.35422 1.19481 1.21639 1.01958 0.91336 0.83154 1.20260 0.94065 0.97237 0.95256 1.22365 1.02069 0.97665 0.95372 1.23210 0.91945 0.95385 0.96744 1.67690 1.04307 1.20519 1.29539 1.23158 1.00640 0.93000 0.90474 1.22345 0.96336 0.99905 0.99235 1.20753 0.79224 0.84984 0.84122 1.90677 1.42550 1.25348 1.86566 1.48730 1.55060 1.25674 1.04476 1.22497 0.95659 0.85060 0.98441 1.23353 1.02253 0.98197 0.94886 1.21341 0.88146 0.92081 0.92655 0.91321 1.42683 1.19850 1.59481 1.15930 1.20351 1.04529 1.27026 0.93384 0.91031 1.27052 0.94356 0.99349 1.08838 1.71012 1.40112 1.39411 1.12043 0.82639 0.75274 0.75966 0.71012 1.22631 1.20078 1.20793 1.21910 0.98672 0.93339 0.83229 0.90072 1.21757 0.99880 0.96862 1.00994 0.93453 0.88118 0.89982 0.89985 0.89174 0.82615 0.80447 0.80670 0.83308 0.87073 0.92233 0.88746 0.90590 0.80262 0.94795 0.92363 0.93215 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.39 71.98 0.68 -2.51 16 2 C 0.08 1.80 2.48 29.85 0.07 1.87 16 3 H 0.12 1.66 7.26 -2.39 -0.02 1.64 16 4 O -0.38 -9.12 9.51 -129.99 -1.24 -10.36 16 5 C 0.09 1.42 5.92 71.24 0.42 1.84 16 6 C -0.06 -1.06 5.55 -19.67 -0.11 -1.17 16 7 C -0.16 -2.50 9.82 22.36 0.22 -2.28 16 8 C 0.08 1.44 11.18 84.68 0.95 2.38 16 9 N -0.51 -10.66 10.36 -195.84 -2.03 -12.69 16 10 C 0.08 1.50 11.18 84.68 0.95 2.45 16 11 C -0.16 -2.75 9.82 22.36 0.22 -2.53 16 12 C 0.52 16.08 7.04 87.66 0.62 16.70 16 13 O -0.57 -23.06 15.58 15.96 0.25 -22.81 16 14 N -0.60 -17.78 3.08 -786.94 -2.42 -20.20 16 15 C 0.10 2.56 5.32 86.86 0.46 3.02 16 16 C -0.15 -4.04 6.77 31.99 0.22 -3.83 16 17 C 0.17 5.98 3.46 46.18 0.16 6.14 16 18 H 0.07 2.47 8.11 -2.39 -0.02 2.45 16 19 N -0.74 -33.92 4.60 -317.33 -1.46 -35.38 16 20 C -0.32 -16.75 9.97 84.03 0.84 -15.91 16 21 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 22 C -0.10 -5.82 5.50 84.86 0.47 -5.35 16 23 N -0.98 -59.54 13.70 21.65 0.30 -59.24 16 24 Si 1.13 50.07 29.92 68.60 2.05 52.12 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.13 4.48 3.45 45.25 0.16 4.64 16 29 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 30 C -0.14 -5.29 8.48 71.98 0.61 -4.68 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.23 7.87 -2.39 -0.02 1.21 16 33 H 0.08 1.51 5.56 -2.39 -0.01 1.50 16 34 H 0.08 0.92 8.05 -2.39 -0.02 0.90 16 35 H 0.09 0.88 7.83 -2.39 -0.02 0.86 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.11 1.74 7.33 -2.38 -0.02 1.72 16 41 H 0.06 1.65 7.16 -2.39 -0.02 1.63 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.36 18.02 4.41 -92.71 -0.41 17.61 16 45 H 0.24 14.76 6.77 -92.70 -0.63 14.13 16 46 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 47 H 0.05 1.97 6.93 -2.39 -0.02 1.96 16 48 H 0.04 1.69 6.21 -2.38 -0.01 1.67 16 Total: -1.00 -76.42 387.65 3.07 -73.35 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.70 Total: 34.41 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 6.92 Total: 0.80 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.62 Total: -127.51 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.99 Total: -33.17 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -76.42 3.07 -73.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179561137.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.912 kcal (2) G-P(sol) polarization free energy of solvation -76.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds