Wall clock time and date at job start Tue Mar 31 2020 17:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47094 * 2 1 4 4 O 1.42899 * 109.46954 * 240.00200 * 2 1 3 5 5 C 1.42897 * 114.00061 * 89.99657 * 4 2 1 6 6 C 1.50701 * 109.47203 * 179.97438 * 5 4 2 7 7 C 1.38649 * 120.79069 * 269.72097 * 6 5 4 8 8 C 1.38204 * 119.16059 * 179.75459 * 7 6 5 9 9 N 1.31870 * 120.76868 * 0.53141 * 8 7 6 10 10 C 1.31876 * 121.72033 * 359.74406 * 9 8 7 11 11 C 1.38196 * 120.76503 * 359.97259 * 10 9 8 12 12 C 1.50698 * 109.47028 * 120.00354 * 2 1 3 13 13 O 1.21280 * 119.99745 * 115.00132 * 12 2 1 14 14 N 1.34774 * 119.99753 * 294.99461 * 12 2 1 15 15 C 1.47425 * 125.65138 * 0.02907 * 14 12 2 16 16 C 1.54908 * 104.92961 * 204.15299 * 15 14 12 17 17 C 1.55154 * 101.58289 * 322.93718 * 16 15 14 18 18 H 1.08997 * 110.72022 * 277.13434 * 17 16 15 19 19 N 1.46503 * 110.72274 * 154.04044 * 17 16 15 20 20 C 1.36939 * 119.99620 * 86.44979 * 19 17 16 21 21 H 1.08002 * 120.00422 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99685 * 180.02562 * 20 19 17 23 23 N 1.31623 * 119.99685 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00090 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46907 * 90.00212 * 24 22 20 26 26 H 1.48506 * 109.47039 * 210.00370 * 24 22 20 27 27 H 1.48498 * 109.46962 * 329.99948 * 24 22 20 28 28 C 1.47290 * 125.79121 * 180.02562 * 14 12 2 29 29 H 1.08999 * 109.87327 * 298.36024 * 28 14 12 30 30 C 1.52998 * 109.98499 * 59.43218 * 28 14 12 31 31 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46784 * 299.99578 * 1 2 3 33 33 H 1.09000 * 109.47203 * 59.99697 * 1 2 3 34 34 H 1.09004 * 109.47601 * 299.99911 * 5 4 2 35 35 H 1.08997 * 109.47158 * 60.00129 * 5 4 2 36 36 H 1.07996 * 120.42031 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.62079 * 180.25406 * 8 7 6 38 38 H 1.08003 * 119.61484 * 180.02562 * 10 9 8 39 39 H 1.08006 * 120.41697 * 180.02562 * 11 10 9 40 40 H 1.09002 * 110.36696 * 85.25946 * 15 14 12 41 41 H 1.08995 * 110.36608 * 323.04783 * 15 14 12 42 42 H 1.09008 * 111.00494 * 81.01141 * 16 15 14 43 43 H 1.09000 * 111.00857 * 204.82205 * 16 15 14 44 44 H 0.96998 * 120.00254 * 266.45795 * 19 17 16 45 45 H 0.97008 * 119.99561 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.47358 * 177.91423 * 30 28 14 47 47 H 1.09002 * 109.47151 * 297.90948 * 30 28 14 48 48 H 1.08998 * 109.47688 * 57.91465 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7013 -0.6281 -3.4611 7 6 4.0603 -0.8064 -3.6699 8 6 4.4827 -1.5609 -4.7480 9 7 3.6106 -2.0989 -5.5780 10 6 2.3111 -1.9456 -5.4135 11 6 1.8146 -1.2091 -4.3548 12 6 2.0323 -0.7105 1.2304 13 8 2.6530 -1.7467 1.1213 14 7 1.7919 -0.1942 2.4519 15 6 1.0538 1.0516 2.7282 16 6 1.5679 1.5217 4.1118 17 6 1.7454 0.1706 4.8536 18 1 0.7966 -0.1687 5.2692 19 7 2.7582 0.2861 5.9058 20 6 2.4026 0.7250 7.1532 21 1 1.3754 0.9856 7.3616 22 6 3.3623 0.8350 8.1501 23 7 3.0204 1.2563 9.3492 24 14 5.1392 0.3849 7.7896 25 1 5.8649 1.5857 7.3031 26 1 5.7846 -0.1148 9.0302 27 1 5.1803 -0.6738 6.7492 28 6 2.2216 -0.7786 3.7339 29 1 1.7685 -1.7615 3.8634 30 6 3.7464 -0.9001 3.7682 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.2536 0.6547 -2.5589 35 1 2.9318 0.9513 -2.0451 36 1 4.7796 -0.3649 -2.9961 37 1 5.5395 -1.7080 -4.9153 38 1 1.6270 -2.4018 -6.1138 39 1 0.7493 -1.0876 -4.2252 40 1 -0.0180 0.8567 2.7679 41 1 1.2745 1.8000 1.9672 42 1 2.5200 2.0440 4.0180 43 1 0.8287 2.1481 4.6111 44 1 3.6808 0.0519 5.7188 45 1 3.6910 1.3328 10.0460 46 1 4.0575 -1.2986 4.7340 47 1 4.0753 -1.5716 2.9751 48 1 4.1927 0.0833 3.6202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179561138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:49 Heat of formation + Delta-G solvation = -12.763362 kcal Electronic energy + Delta-G solvation = -28577.851828 eV Core-core repulsion = 24633.989206 eV Total energy + Delta-G solvation = -3943.862622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62604 -40.30375 -38.53721 -37.21032 -34.50252 -33.78965 -32.25045 -31.56973 -31.14996 -30.83747 -29.19246 -27.28618 -25.56098 -24.79899 -23.82795 -23.04391 -22.44960 -22.26252 -19.97396 -18.88646 -18.02359 -17.69989 -17.05627 -16.85114 -16.61246 -16.03368 -15.86434 -15.53111 -15.27593 -14.54551 -14.38205 -14.17959 -14.05070 -13.96007 -13.70332 -13.43438 -13.33476 -12.91476 -12.70651 -12.59469 -12.40264 -12.23810 -11.99305 -11.82107 -11.75707 -11.56817 -11.44612 -11.23858 -10.93737 -10.60632 -10.37863 -10.27606 -10.11694 -10.10781 -9.84921 -9.66929 -9.50257 -9.43638 -9.02705 -8.56976 -7.38506 -5.86081 -3.23143 0.75505 0.78703 2.60878 2.63092 3.31201 3.33753 3.35772 3.40412 3.71138 4.11448 4.21986 4.28990 4.40277 4.50829 4.56988 4.65443 4.70415 4.76049 4.84036 4.89957 4.95365 5.00966 5.10898 5.22230 5.25064 5.34190 5.35778 5.41860 5.44067 5.48690 5.57668 5.60068 5.74491 5.81719 5.84636 5.92548 5.96623 6.10377 6.31863 6.32524 6.43253 6.45083 6.52467 6.69963 6.78699 7.57715 7.60475 7.88738 8.20723 8.32614 9.09850 9.82151 10.00698 11.31638 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.002265 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.275406 B =12357.515830 C =13112.064771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.075 3.925 3 H 0.086 0.914 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.043 4.043 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.529 3.471 13 O -0.521 6.521 14 N -0.608 5.608 15 C 0.094 3.906 16 C -0.153 4.153 17 C 0.180 3.820 18 H 0.073 0.927 19 N -0.741 5.741 20 C -0.249 4.249 21 H 0.092 0.908 22 C 0.009 3.991 23 N -0.930 5.930 24 Si 0.879 3.121 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.275 1.275 28 C 0.129 3.871 29 H 0.076 0.924 30 C -0.165 4.165 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.368 0.632 45 H 0.261 0.739 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 0.668 -27.382 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 H 0.104 0.896 4 O -0.267 6.267 5 C 0.022 3.978 6 C -0.052 4.052 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.315 3.685 13 O -0.396 6.396 14 N -0.344 5.344 15 C -0.029 4.029 16 C -0.194 4.194 17 C 0.068 3.932 18 H 0.091 0.909 19 N -0.386 5.386 20 C -0.378 4.378 21 H 0.110 0.890 22 C -0.188 4.188 23 N -0.577 5.577 24 Si 0.709 3.291 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.202 1.202 28 C 0.026 3.974 29 H 0.094 0.906 30 C -0.223 4.223 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.204 0.796 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.247 -0.555 -27.989 28.314 hybrid contribution 0.899 0.648 0.670 1.295 sum -3.347 0.093 -27.319 27.523 Atomic orbital electron populations 1.22304 0.93378 1.04062 1.03441 1.21869 0.95276 0.96170 0.85282 0.89643 1.88121 1.86639 1.33499 1.18428 1.21415 1.00126 0.91667 0.84640 1.19962 0.93702 0.96773 0.94713 1.22127 0.95891 0.99806 0.99059 1.22794 0.99766 0.92993 0.90467 1.67677 1.03401 1.19585 1.28567 1.22779 0.91986 0.95366 0.96076 1.22081 1.00998 0.98263 0.95786 1.19853 0.80239 0.85428 0.82952 1.90713 1.39903 1.23255 1.85725 1.48574 1.55284 1.25452 1.05131 1.22508 0.96072 0.85541 0.98813 1.23524 1.02043 1.00609 0.93196 1.21138 0.93582 0.91340 0.87106 0.90944 1.42973 1.06249 1.80302 1.09056 1.19042 0.96458 1.36696 0.85630 0.89018 1.24660 0.97514 1.01064 0.95537 1.69695 1.33293 1.52318 1.02348 0.86661 0.86651 0.78442 0.77356 1.20973 1.21527 1.20164 1.21878 0.95721 0.97522 0.82322 0.90587 1.22089 0.95128 1.02234 1.02830 0.91014 0.90190 0.91337 0.91655 0.91725 0.84511 0.82482 0.82546 0.84584 0.91117 0.91326 0.90686 0.89953 0.79578 0.92930 0.90764 0.91613 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.39 37.16 0.35 -1.05 16 2 C 0.08 0.79 2.48 -27.88 -0.07 0.72 16 3 H 0.09 0.70 7.26 -51.93 -0.38 0.32 16 4 O -0.35 -4.16 9.51 -55.09 -0.52 -4.68 16 5 C 0.10 0.80 5.92 36.01 0.21 1.02 16 6 C -0.04 -0.39 5.55 -104.32 -0.58 -0.97 16 7 C -0.15 -1.32 9.82 -39.44 -0.39 -1.71 16 8 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 9 N -0.48 -4.95 10.36 -13.25 -0.14 -5.09 16 10 C 0.09 0.80 11.18 -17.55 -0.20 0.60 16 11 C -0.15 -1.22 9.82 -39.44 -0.39 -1.61 16 12 C 0.53 7.74 7.03 -10.99 -0.08 7.67 16 13 O -0.52 -9.84 15.44 -14.31 -0.22 -10.06 16 14 N -0.61 -8.44 3.09 -162.82 -0.50 -8.94 16 15 C 0.09 1.04 5.33 -2.53 -0.01 1.02 16 16 C -0.15 -2.21 6.77 -24.58 -0.17 -2.37 16 17 C 0.18 3.16 3.45 -66.09 -0.23 2.93 16 18 H 0.07 1.29 8.12 -51.93 -0.42 0.86 16 19 N -0.74 -16.42 4.82 -51.65 -0.25 -16.67 16 20 C -0.25 -6.62 10.46 -15.06 -0.16 -6.77 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 22 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 23 N -0.93 -28.24 13.97 55.49 0.78 -27.46 16 24 Si 0.88 21.48 27.74 -169.99 -4.71 16.76 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.34 6.48 56.52 0.37 -5.98 16 28 C 0.13 2.10 3.48 -66.81 -0.23 1.87 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 C -0.16 -2.85 7.96 37.16 0.30 -2.55 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.57 5.56 -51.93 -0.29 0.28 16 33 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 34 H 0.07 0.38 7.83 -51.93 -0.41 -0.02 16 35 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 40 H 0.07 0.66 7.16 -51.93 -0.37 0.29 16 41 H 0.07 0.59 7.32 -51.93 -0.38 0.21 16 42 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.37 8.14 2.81 -40.82 -0.11 8.02 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 1.37 6.65 -51.93 -0.35 1.02 16 47 H 0.06 1.16 6.79 -51.93 -0.35 0.81 16 48 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -34.65 385.63 -8.97 -43.62 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.28 Total: 7.10 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.93 Total: -0.39 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.11 Total: -58.16 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.74 Total: -14.74 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.65 -8.97 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179561138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.860 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds