Wall clock time and date at job start Tue Mar 31 2020 17:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47094 * 2 1 4 4 O 1.42899 * 109.46954 * 240.00200 * 2 1 3 5 5 C 1.42897 * 114.00061 * 89.99657 * 4 2 1 6 6 C 1.50701 * 109.47203 * 179.97438 * 5 4 2 7 7 C 1.38649 * 120.79069 * 269.72097 * 6 5 4 8 8 C 1.38204 * 119.16059 * 179.75459 * 7 6 5 9 9 N 1.31870 * 120.76868 * 0.53141 * 8 7 6 10 10 C 1.31876 * 121.72033 * 359.74406 * 9 8 7 11 11 C 1.38196 * 120.76503 * 359.97259 * 10 9 8 12 12 C 1.50698 * 109.47028 * 120.00354 * 2 1 3 13 13 O 1.21280 * 119.99745 * 115.00132 * 12 2 1 14 14 N 1.34774 * 119.99753 * 294.99461 * 12 2 1 15 15 C 1.47425 * 125.65138 * 0.02907 * 14 12 2 16 16 C 1.54908 * 104.92961 * 204.15299 * 15 14 12 17 17 C 1.55154 * 101.58289 * 322.93718 * 16 15 14 18 18 H 1.08997 * 110.72022 * 277.13434 * 17 16 15 19 19 N 1.46503 * 110.72274 * 154.04044 * 17 16 15 20 20 C 1.36939 * 119.99620 * 86.44979 * 19 17 16 21 21 H 1.08002 * 120.00422 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99685 * 180.02562 * 20 19 17 23 23 N 1.31623 * 119.99685 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00090 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46907 * 90.00212 * 24 22 20 26 26 H 1.48506 * 109.47039 * 210.00370 * 24 22 20 27 27 H 1.48498 * 109.46962 * 329.99948 * 24 22 20 28 28 C 1.47290 * 125.79121 * 180.02562 * 14 12 2 29 29 H 1.08999 * 109.87327 * 298.36024 * 28 14 12 30 30 C 1.52998 * 109.98499 * 59.43218 * 28 14 12 31 31 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46784 * 299.99578 * 1 2 3 33 33 H 1.09000 * 109.47203 * 59.99697 * 1 2 3 34 34 H 1.09004 * 109.47601 * 299.99911 * 5 4 2 35 35 H 1.08997 * 109.47158 * 60.00129 * 5 4 2 36 36 H 1.07996 * 120.42031 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.62079 * 180.25406 * 8 7 6 38 38 H 1.08003 * 119.61484 * 180.02562 * 10 9 8 39 39 H 1.08006 * 120.41697 * 180.02562 * 11 10 9 40 40 H 1.09002 * 110.36696 * 85.25946 * 15 14 12 41 41 H 1.08995 * 110.36608 * 323.04783 * 15 14 12 42 42 H 1.09008 * 111.00494 * 81.01141 * 16 15 14 43 43 H 1.09000 * 111.00857 * 204.82205 * 16 15 14 44 44 H 0.96998 * 120.00254 * 266.45795 * 19 17 16 45 45 H 0.97008 * 119.99561 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.47358 * 177.91423 * 30 28 14 47 47 H 1.09002 * 109.47151 * 297.90948 * 30 28 14 48 48 H 1.08998 * 109.47688 * 57.91465 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7013 -0.6281 -3.4611 7 6 4.0603 -0.8064 -3.6699 8 6 4.4827 -1.5609 -4.7480 9 7 3.6106 -2.0989 -5.5780 10 6 2.3111 -1.9456 -5.4135 11 6 1.8146 -1.2091 -4.3548 12 6 2.0323 -0.7105 1.2304 13 8 2.6530 -1.7467 1.1213 14 7 1.7919 -0.1942 2.4519 15 6 1.0538 1.0516 2.7282 16 6 1.5679 1.5217 4.1118 17 6 1.7454 0.1706 4.8536 18 1 0.7966 -0.1687 5.2692 19 7 2.7582 0.2861 5.9058 20 6 2.4026 0.7250 7.1532 21 1 1.3754 0.9856 7.3616 22 6 3.3623 0.8350 8.1501 23 7 3.0204 1.2563 9.3492 24 14 5.1392 0.3849 7.7896 25 1 5.8649 1.5857 7.3031 26 1 5.7846 -0.1148 9.0302 27 1 5.1803 -0.6738 6.7492 28 6 2.2216 -0.7786 3.7339 29 1 1.7685 -1.7615 3.8634 30 6 3.7464 -0.9001 3.7682 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.2536 0.6547 -2.5589 35 1 2.9318 0.9513 -2.0451 36 1 4.7796 -0.3649 -2.9961 37 1 5.5395 -1.7080 -4.9153 38 1 1.6270 -2.4018 -6.1138 39 1 0.7493 -1.0876 -4.2252 40 1 -0.0180 0.8567 2.7679 41 1 1.2745 1.8000 1.9672 42 1 2.5200 2.0440 4.0180 43 1 0.8287 2.1481 4.6111 44 1 3.6808 0.0519 5.7188 45 1 3.6910 1.3328 10.0460 46 1 4.0575 -1.2986 4.7340 47 1 4.0753 -1.5716 2.9751 48 1 4.1927 0.0833 3.6202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179561138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:48 Heat of formation + Delta-G solvation = -35.414140 kcal Electronic energy + Delta-G solvation = -28578.834039 eV Core-core repulsion = 24633.989206 eV Total energy + Delta-G solvation = -3944.844833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55851 -41.09494 -39.52439 -38.32210 -36.09655 -34.54483 -33.75952 -32.47239 -32.16252 -31.99853 -30.57639 -27.89562 -26.96846 -25.82269 -24.75875 -24.43151 -23.38486 -22.96035 -21.22422 -20.19143 -19.84637 -18.55222 -17.86487 -17.57257 -17.44057 -17.13383 -16.75586 -16.50628 -16.23420 -15.95425 -15.92688 -15.24657 -15.01493 -14.77324 -14.72428 -14.55531 -14.29782 -14.13824 -13.81021 -13.59466 -13.43577 -13.23561 -13.15744 -13.07205 -12.92657 -12.84448 -12.62895 -12.45909 -12.30476 -12.21751 -11.89352 -11.70813 -11.55178 -11.05916 -10.96212 -10.76579 -10.49085 -10.47493 -10.10514 -9.72076 -9.31813 -8.02333 -5.35506 0.12128 0.18292 1.36471 1.37412 1.44304 1.54580 1.65438 2.46557 2.62959 3.04415 3.26313 3.37659 3.54415 3.56993 3.68618 3.74987 3.76896 3.85382 3.93405 4.04954 4.10559 4.10603 4.19051 4.31443 4.34447 4.38638 4.42494 4.46063 4.55878 4.68360 4.70515 4.74524 4.79479 4.84544 4.87004 4.97396 5.00624 5.11012 5.21136 5.24711 5.28037 5.33215 5.46126 5.73969 5.78380 6.00891 6.21638 6.51847 6.98552 7.06511 7.11847 7.82404 8.00001 9.18531 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.002265 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.275406 B =12357.515830 C =13112.064771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 H 0.118 0.882 4 O -0.381 6.381 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.161 4.161 8 C 0.082 3.918 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.152 4.152 12 C 0.521 3.479 13 O -0.574 6.574 14 N -0.605 5.605 15 C 0.100 3.900 16 C -0.146 4.146 17 C 0.169 3.831 18 H 0.069 0.931 19 N -0.747 5.747 20 C -0.223 4.223 21 H 0.068 0.932 22 C -0.059 4.059 23 N -0.979 5.979 24 Si 0.939 3.061 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.257 1.257 28 C 0.134 3.866 29 H 0.066 0.934 30 C -0.157 4.157 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.369 0.631 45 H 0.257 0.743 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 1.955 -30.069 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.020 3.980 3 H 0.135 0.865 4 O -0.300 6.300 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.074 4.074 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.172 4.172 12 C 0.311 3.689 13 O -0.452 6.452 14 N -0.340 5.340 15 C -0.022 4.022 16 C -0.186 4.186 17 C 0.060 3.940 18 H 0.087 0.913 19 N -0.392 5.392 20 C -0.354 4.354 21 H 0.086 0.914 22 C -0.251 4.251 23 N -0.630 5.630 24 Si 0.767 3.233 25 H -0.204 1.204 26 H -0.224 1.224 27 H -0.182 1.182 28 C 0.029 3.971 29 H 0.085 0.915 30 C -0.215 4.215 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.164 0.836 37 H 0.190 0.810 38 H 0.197 0.803 39 H 0.178 0.822 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.205 0.795 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.300 0.750 -30.749 31.211 hybrid contribution 1.116 0.214 1.436 1.832 sum -4.184 0.964 -29.312 29.625 Atomic orbital electron populations 1.22311 0.91199 1.03553 1.05551 1.21945 0.96650 0.96482 0.82890 0.86498 1.88082 1.87048 1.35370 1.19513 1.21616 1.01969 0.91216 0.83159 1.20273 0.93912 0.97204 0.95397 1.22333 0.96512 0.99983 0.99231 1.23118 1.00590 0.93092 0.90582 1.67691 1.04437 1.20542 1.29462 1.23241 0.91857 0.95432 0.96792 1.22372 1.02168 0.97472 0.95179 1.20789 0.79158 0.84970 0.84024 1.90689 1.42315 1.25746 1.86485 1.48591 1.55187 1.26094 1.04165 1.22707 0.97026 0.84919 0.97539 1.23354 1.02071 0.98292 0.94899 1.21350 0.92203 0.93823 0.86630 0.91279 1.42985 1.07320 1.80278 1.08666 1.19025 0.95158 1.34083 0.87098 0.91450 1.25364 1.01686 1.02523 0.95547 1.69854 1.34449 1.55138 1.03529 0.85674 0.81736 0.78743 0.77170 1.20375 1.22435 1.18177 1.21610 0.94976 0.96977 0.83520 0.91547 1.21978 0.95918 1.01975 1.01615 0.92877 0.88823 0.88429 0.88767 0.90497 0.83649 0.80962 0.80337 0.82217 0.88392 0.87410 0.91635 0.89384 0.79489 0.93430 0.92235 0.92348 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.39 71.98 0.68 -1.28 16 2 C 0.08 1.40 2.48 29.85 0.07 1.47 16 3 H 0.12 1.27 7.26 -2.39 -0.02 1.26 16 4 O -0.38 -8.05 9.51 -129.99 -1.24 -9.29 16 5 C 0.10 1.25 5.92 71.24 0.42 1.67 16 6 C -0.06 -0.96 5.55 -19.67 -0.11 -1.07 16 7 C -0.16 -2.70 9.82 22.36 0.22 -2.48 16 8 C 0.08 1.44 11.18 84.68 0.95 2.39 16 9 N -0.51 -10.20 10.36 -195.84 -2.03 -12.22 16 10 C 0.08 1.30 11.18 84.68 0.95 2.24 16 11 C -0.15 -2.13 9.82 22.36 0.22 -1.91 16 12 C 0.52 14.14 7.03 87.66 0.62 14.76 16 13 O -0.57 -21.44 15.44 15.96 0.25 -21.19 16 14 N -0.61 -15.21 3.09 -787.43 -2.43 -17.64 16 15 C 0.10 1.76 5.33 86.85 0.46 2.23 16 16 C -0.15 -3.82 6.77 31.98 0.22 -3.60 16 17 C 0.17 5.74 3.45 46.18 0.16 5.90 16 18 H 0.07 2.40 8.12 -2.39 -0.02 2.38 16 19 N -0.75 -32.66 4.82 -317.32 -1.53 -34.19 16 20 C -0.22 -11.94 10.46 84.03 0.88 -11.06 16 21 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 22 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 23 N -0.98 -61.00 13.97 21.65 0.30 -60.70 16 24 Si 0.94 44.69 27.74 68.60 1.90 46.59 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 27 H -0.26 -11.25 6.48 99.48 0.64 -10.60 16 28 C 0.13 4.21 3.48 45.29 0.16 4.37 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 C -0.16 -5.31 7.96 71.98 0.57 -4.74 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.81 5.56 -2.39 -0.01 0.80 16 33 H 0.10 0.60 7.87 -2.39 -0.02 0.58 16 34 H 0.09 0.66 7.83 -2.38 -0.02 0.64 16 35 H 0.08 0.79 8.04 -2.39 -0.02 0.77 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 38 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.10 1.30 7.16 -2.39 -0.02 1.28 16 41 H 0.11 1.18 7.32 -2.39 -0.02 1.16 16 42 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.37 15.96 2.81 -92.71 -0.26 15.70 16 45 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 46 H 0.06 2.16 6.65 -2.38 -0.02 2.15 16 47 H 0.06 2.06 6.79 -2.39 -0.02 2.05 16 48 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 Total: -1.00 -78.66 385.63 2.79 -75.87 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.64 Total: 26.82 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.93 Total: 5.96 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.69 Total: -124.76 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.99 Total: -30.48 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Total: -78.66 2.79 -75.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179561138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.453 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds