Wall clock time and date at job start Tue Mar 31 2020 17:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.30640 * 2 1 4 4 C 1.54390 * 110.43483 * 237.76382 * 2 1 3 5 5 N 1.48141 * 104.61766 * 264.95174 * 4 2 1 6 6 C 1.34783 * 127.83608 * 140.43443 * 5 4 2 7 7 O 1.21685 * 119.99621 * 177.41460 * 6 5 4 8 8 C 1.46717 * 119.99825 * 357.41192 * 6 5 4 9 9 C 1.36342 * 126.64646 * 19.75062 * 8 6 5 10 10 N 1.33689 * 107.45316 * 179.97438 * 9 8 6 11 11 C 1.30618 * 108.99694 * 359.97438 * 10 9 8 12 12 C 1.50700 * 125.42419 * 180.02562 * 11 10 9 13 13 C 1.53002 * 117.49740 * 8.59488 * 12 11 10 14 14 C 1.53003 * 60.00161 * 252.51451 * 13 12 11 15 15 O 1.33667 * 109.15339 * 359.73172 * 11 10 9 16 16 C 1.48145 * 104.32492 * 320.41597 * 5 4 2 17 17 C 1.54289 * 110.34179 * 122.17413 * 2 1 3 18 18 C 1.52999 * 110.34092 * 0.02562 * 17 2 1 19 19 C 1.52995 * 110.34417 * 237.84881 * 17 2 1 20 20 N 1.46501 * 109.47499 * 180.02562 * 19 17 2 21 21 C 1.36938 * 120.00381 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99786 * 359.97438 * 21 20 19 23 23 C 1.38807 * 120.00069 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00119 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00141 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47286 * 90.00037 * 25 23 21 27 27 H 1.48501 * 109.47512 * 209.99851 * 25 23 21 28 28 H 1.48504 * 109.47128 * 329.99790 * 25 23 21 29 29 H 1.08996 * 109.47206 * 297.82632 * 1 2 3 30 30 H 1.08999 * 109.47081 * 57.82197 * 1 2 3 31 31 H 1.08996 * 109.47173 * 177.82647 * 1 2 3 32 32 H 1.09001 * 110.40060 * 23.73646 * 4 2 1 33 33 H 1.09000 * 110.40564 * 146.16570 * 4 2 1 34 34 H 1.08000 * 126.27028 * 359.96173 * 9 8 6 35 35 H 1.09001 * 115.54939 * 154.30606 * 12 11 10 36 36 H 1.09000 * 117.49903 * 0.02562 * 13 12 11 37 37 H 1.09002 * 117.49398 * 145.02181 * 13 12 11 38 38 H 1.08997 * 117.49484 * 252.51644 * 14 13 12 39 39 H 1.08998 * 117.49949 * 107.48973 * 14 13 12 40 40 H 1.09004 * 110.40411 * 280.79708 * 16 5 4 41 41 H 1.09001 * 110.40705 * 158.37472 * 16 5 4 42 42 H 1.08998 * 109.47055 * 298.52436 * 18 17 2 43 43 H 1.09003 * 109.47048 * 58.52824 * 18 17 2 44 44 H 1.09001 * 109.46857 * 178.52273 * 18 17 2 45 45 H 1.09003 * 109.47625 * 300.00020 * 19 17 2 46 46 H 1.09004 * 109.47287 * 60.00052 * 19 17 2 47 47 H 0.96998 * 119.99428 * 359.97438 * 20 19 17 48 48 H 0.97003 * 120.00203 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0690 -0.7717 -1.2237 5 7 2.3178 -2.1429 -0.7212 6 6 2.0838 -3.3102 -1.3531 7 8 2.3878 -4.3615 -0.8211 8 6 1.4627 -3.3131 -2.6823 9 6 1.4074 -2.2687 -3.5570 10 7 0.7571 -2.6917 -4.6459 11 6 0.4145 -3.9409 -4.4781 12 6 -0.3350 -4.7830 -5.4782 13 6 -0.5531 -4.1954 -6.8739 14 6 -1.7271 -4.3080 -5.8993 15 8 0.8400 -4.3553 -3.2806 16 6 2.8823 -1.9400 0.6334 17 6 2.0663 -0.7703 1.2245 18 6 0.9061 -1.3020 2.0684 19 6 2.9670 0.1334 2.0688 20 7 3.4656 -0.6163 3.2245 21 6 4.2960 -0.0089 4.1282 22 1 4.5837 1.0227 3.9888 23 6 4.7688 -0.7194 5.2229 24 7 4.4186 -1.9768 5.3926 25 14 5.9021 0.1088 6.4553 26 1 5.0911 0.7385 7.5282 27 1 6.8103 -0.9038 7.0511 28 1 6.7060 1.1503 5.7665 29 1 -0.3633 0.4797 0.9088 30 1 -0.3633 0.5473 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3253 -0.7879 -2.0205 33 1 2.9969 -0.3225 -1.5778 34 1 1.8141 -1.2808 -3.3991 35 1 -0.1709 -5.8580 -5.4043 36 1 -0.1542 -3.1999 -7.0689 37 1 -0.5324 -4.8840 -7.7187 38 1 -2.4788 -5.0707 -6.1028 39 1 -2.1009 -3.3865 -5.4529 40 1 3.9373 -1.6733 0.5693 41 1 2.7524 -2.8378 1.2377 42 1 0.3103 -0.4659 2.4346 43 1 0.2812 -1.9535 1.4575 44 1 1.3003 -1.8653 2.9141 45 1 3.8091 0.4729 1.4656 46 1 2.3960 0.9956 2.4134 47 1 3.2069 -1.5427 3.3498 48 1 4.7493 -2.4735 6.1574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181764856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:40 Heat of formation + Delta-G solvation = 46.352037 kcal Electronic energy + Delta-G solvation = -29058.355073 eV Core-core repulsion = 25117.055887 eV Total energy + Delta-G solvation = -3941.299186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.72876 -40.41183 -38.30753 -37.70315 -35.36498 -34.73280 -33.26768 -31.62115 -30.86326 -29.55805 -27.63665 -26.12656 -25.66506 -24.54556 -23.82788 -23.05128 -22.81020 -21.23883 -20.97397 -20.28033 -18.71379 -17.72077 -17.58807 -17.12310 -16.76928 -16.09254 -15.97499 -15.28907 -15.10340 -14.59887 -14.38779 -14.06920 -14.02532 -13.94949 -13.38821 -13.12576 -13.01321 -12.81120 -12.58045 -12.29455 -12.09772 -12.07796 -11.87829 -11.54624 -11.40502 -11.33660 -11.24971 -11.20561 -11.04941 -11.00920 -10.82226 -10.47797 -10.40614 -10.23575 -10.15979 -9.93012 -9.63686 -9.14327 -8.89463 -8.76497 -6.93513 -5.76714 -3.05961 0.58051 1.74491 2.03699 2.92594 3.01414 3.29064 3.43447 3.48487 3.50533 3.61997 4.12949 4.24124 4.38531 4.44790 4.47838 4.52342 4.55816 4.69675 4.81743 5.10941 5.13628 5.17513 5.27831 5.30804 5.34422 5.36552 5.44183 5.50169 5.54811 5.60455 5.64049 5.71402 5.81181 5.84731 5.93714 5.96055 6.03063 6.09416 6.16712 6.19858 6.39269 6.51313 6.63691 6.72744 6.82108 7.22438 7.34514 7.69269 7.92529 8.41624 9.53064 10.09739 10.43946 11.45837 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.002382 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.800784 B =11750.837652 C =12199.615914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.093 0.907 4 C 0.084 3.916 5 N -0.602 5.602 6 C 0.616 3.384 7 O -0.519 6.519 8 C -0.084 4.084 9 C 0.011 3.989 10 N -0.484 5.484 11 C 0.241 3.759 12 C -0.088 4.088 13 C -0.143 4.143 14 C -0.152 4.152 15 O -0.165 6.165 16 C 0.125 3.875 17 C -0.075 4.075 18 C -0.133 4.133 19 C 0.168 3.832 20 N -0.731 5.731 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.202 0.798 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.022 0.978 46 H 0.024 0.976 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.651 0.039 -24.398 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.038 4.038 5 N -0.336 5.336 6 C 0.403 3.597 7 O -0.395 6.395 8 C -0.140 4.140 9 C -0.131 4.131 10 N -0.213 5.213 11 C 0.036 3.964 12 C -0.107 4.107 13 C -0.181 4.181 14 C -0.190 4.190 15 O -0.050 6.050 16 C 0.005 3.995 17 C -0.076 4.076 18 C -0.190 4.190 19 C 0.040 3.960 20 N -0.376 5.376 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.218 0.782 35 H 0.155 0.845 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.039 0.961 46 H 0.042 0.958 47 H 0.220 0.780 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.531 -0.262 -24.586 27.596 hybrid contribution 0.874 -0.211 1.479 1.731 sum -11.657 -0.473 -23.106 25.884 Atomic orbital electron populations 1.21921 0.94400 1.01903 1.01822 1.22139 0.96377 0.99634 0.93409 0.88920 1.23035 1.01251 0.81656 0.97876 1.48535 1.62384 1.04359 1.18372 1.15713 0.79122 0.83256 0.81647 1.90911 1.52232 1.30206 1.66162 1.22729 1.06247 0.87065 0.97976 1.24107 0.99555 1.00375 0.89086 1.70289 1.15483 1.09575 1.25949 1.25418 0.96587 0.90359 0.84031 1.20173 0.99319 0.97791 0.93392 1.23126 1.00705 1.03658 0.90577 1.23157 0.89965 1.03754 1.02132 1.84474 1.55168 1.37819 1.27507 1.22627 0.97516 0.99471 0.79932 1.21733 0.96325 0.94977 0.94556 1.21878 0.96783 1.00828 0.99547 1.20716 0.93643 0.92937 0.88676 1.42407 1.57442 1.12903 1.24850 1.19189 1.20571 0.95709 1.01731 0.91205 1.24742 1.01100 0.96073 0.98978 1.69656 1.48928 1.08394 1.30982 0.86202 0.80368 0.78138 0.81520 1.21776 1.21812 1.20801 0.91580 0.93050 0.92525 0.89530 0.89923 0.78162 0.84514 0.86919 0.87262 0.87168 0.87840 0.89655 0.89170 0.92241 0.93397 0.91315 0.96058 0.95787 0.78031 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 7.93 37.16 0.29 -1.15 16 2 C -0.10 -1.06 3.30 -89.22 -0.29 -1.35 16 3 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 4 C 0.08 0.86 5.40 -2.41 -0.01 0.84 16 5 N -0.60 -8.41 3.32 -170.83 -0.57 -8.98 16 6 C 0.62 9.93 7.87 -12.83 -0.10 9.83 16 7 O -0.52 -10.52 17.39 3.44 0.06 -10.46 16 8 C -0.08 -1.17 7.10 -36.84 -0.26 -1.43 16 9 C 0.01 0.13 10.10 -17.43 -0.18 -0.05 16 10 N -0.48 -5.60 10.79 -10.81 -0.12 -5.72 16 11 C 0.24 2.73 7.87 -12.79 -0.10 2.63 16 12 C -0.09 -0.65 6.33 -91.77 -0.58 -1.23 16 13 C -0.14 -0.78 10.13 -26.73 -0.27 -1.06 16 14 C -0.15 -0.83 10.23 -26.73 -0.27 -1.11 16 15 O -0.17 -2.34 10.79 2.64 0.03 -2.31 16 16 C 0.13 2.01 5.70 -2.41 -0.01 2.00 16 17 C -0.07 -1.11 0.73 -153.11 -0.11 -1.22 16 18 C -0.13 -2.07 7.07 37.16 0.26 -1.80 16 19 C 0.17 3.10 4.87 -4.04 -0.02 3.08 16 20 N -0.73 -17.59 5.13 -59.91 -0.31 -17.90 16 21 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.07 0.68 6.84 -51.93 -0.36 0.33 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.63 6.76 -51.93 -0.35 0.28 16 32 H 0.09 0.73 4.57 -51.93 -0.24 0.50 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.20 1.67 5.44 -52.49 -0.29 1.39 16 35 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.11 0.74 7.87 -51.93 -0.41 0.33 16 37 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.43 7.83 -51.93 -0.41 1.03 16 41 H 0.09 1.68 7.62 -51.93 -0.40 1.28 16 42 H 0.06 0.87 6.89 -51.93 -0.36 0.51 16 43 H 0.05 0.70 6.71 -51.93 -0.35 0.35 16 44 H 0.07 1.27 6.78 -51.93 -0.35 0.92 16 45 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.39 9.84 6.19 -40.82 -0.25 9.59 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -33.89 383.93 -8.40 -42.29 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.08 Total: 6.49 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.91 Total: 0.82 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.27 Total: -59.86 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.89 -8.40 -42.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181764856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.644 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds