Wall clock time and date at job start Tue Mar 31 2020 17:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.30640 * 2 1 4 4 C 1.54390 * 110.43483 * 237.76382 * 2 1 3 5 5 N 1.48141 * 104.61766 * 264.95174 * 4 2 1 6 6 C 1.34783 * 127.83608 * 140.43443 * 5 4 2 7 7 O 1.21685 * 119.99621 * 177.41460 * 6 5 4 8 8 C 1.46717 * 119.99825 * 357.41192 * 6 5 4 9 9 C 1.36342 * 126.64646 * 19.75062 * 8 6 5 10 10 N 1.33689 * 107.45316 * 179.97438 * 9 8 6 11 11 C 1.30618 * 108.99694 * 359.97438 * 10 9 8 12 12 C 1.50700 * 125.42419 * 180.02562 * 11 10 9 13 13 C 1.53002 * 117.49740 * 8.59488 * 12 11 10 14 14 C 1.53003 * 60.00161 * 252.51451 * 13 12 11 15 15 O 1.33667 * 109.15339 * 359.73172 * 11 10 9 16 16 C 1.48145 * 104.32492 * 320.41597 * 5 4 2 17 17 C 1.54289 * 110.34179 * 122.17413 * 2 1 3 18 18 C 1.52999 * 110.34092 * 0.02562 * 17 2 1 19 19 C 1.52995 * 110.34417 * 237.84881 * 17 2 1 20 20 N 1.46501 * 109.47499 * 180.02562 * 19 17 2 21 21 C 1.36938 * 120.00381 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99786 * 359.97438 * 21 20 19 23 23 C 1.38807 * 120.00069 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00119 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00141 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47286 * 90.00037 * 25 23 21 27 27 H 1.48501 * 109.47512 * 209.99851 * 25 23 21 28 28 H 1.48504 * 109.47128 * 329.99790 * 25 23 21 29 29 H 1.08996 * 109.47206 * 297.82632 * 1 2 3 30 30 H 1.08999 * 109.47081 * 57.82197 * 1 2 3 31 31 H 1.08996 * 109.47173 * 177.82647 * 1 2 3 32 32 H 1.09001 * 110.40060 * 23.73646 * 4 2 1 33 33 H 1.09000 * 110.40564 * 146.16570 * 4 2 1 34 34 H 1.08000 * 126.27028 * 359.96173 * 9 8 6 35 35 H 1.09001 * 115.54939 * 154.30606 * 12 11 10 36 36 H 1.09000 * 117.49903 * 0.02562 * 13 12 11 37 37 H 1.09002 * 117.49398 * 145.02181 * 13 12 11 38 38 H 1.08997 * 117.49484 * 252.51644 * 14 13 12 39 39 H 1.08998 * 117.49949 * 107.48973 * 14 13 12 40 40 H 1.09004 * 110.40411 * 280.79708 * 16 5 4 41 41 H 1.09001 * 110.40705 * 158.37472 * 16 5 4 42 42 H 1.08998 * 109.47055 * 298.52436 * 18 17 2 43 43 H 1.09003 * 109.47048 * 58.52824 * 18 17 2 44 44 H 1.09001 * 109.46857 * 178.52273 * 18 17 2 45 45 H 1.09003 * 109.47625 * 300.00020 * 19 17 2 46 46 H 1.09004 * 109.47287 * 60.00052 * 19 17 2 47 47 H 0.96998 * 119.99428 * 359.97438 * 20 19 17 48 48 H 0.97003 * 120.00203 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0690 -0.7717 -1.2237 5 7 2.3178 -2.1429 -0.7212 6 6 2.0838 -3.3102 -1.3531 7 8 2.3878 -4.3615 -0.8211 8 6 1.4627 -3.3131 -2.6823 9 6 1.4074 -2.2687 -3.5570 10 7 0.7571 -2.6917 -4.6459 11 6 0.4145 -3.9409 -4.4781 12 6 -0.3350 -4.7830 -5.4782 13 6 -0.5531 -4.1954 -6.8739 14 6 -1.7271 -4.3080 -5.8993 15 8 0.8400 -4.3553 -3.2806 16 6 2.8823 -1.9400 0.6334 17 6 2.0663 -0.7703 1.2245 18 6 0.9061 -1.3020 2.0684 19 6 2.9670 0.1334 2.0688 20 7 3.4656 -0.6163 3.2245 21 6 4.2960 -0.0089 4.1282 22 1 4.5837 1.0227 3.9888 23 6 4.7688 -0.7194 5.2229 24 7 4.4186 -1.9768 5.3926 25 14 5.9021 0.1088 6.4553 26 1 5.0911 0.7385 7.5282 27 1 6.8103 -0.9038 7.0511 28 1 6.7060 1.1503 5.7665 29 1 -0.3633 0.4797 0.9088 30 1 -0.3633 0.5473 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3253 -0.7879 -2.0205 33 1 2.9969 -0.3225 -1.5778 34 1 1.8141 -1.2808 -3.3991 35 1 -0.1709 -5.8580 -5.4043 36 1 -0.1542 -3.1999 -7.0689 37 1 -0.5324 -4.8840 -7.7187 38 1 -2.4788 -5.0707 -6.1028 39 1 -2.1009 -3.3865 -5.4529 40 1 3.9373 -1.6733 0.5693 41 1 2.7524 -2.8378 1.2377 42 1 0.3103 -0.4659 2.4346 43 1 0.2812 -1.9535 1.4575 44 1 1.3003 -1.8653 2.9141 45 1 3.8091 0.4729 1.4656 46 1 2.3960 0.9956 2.4134 47 1 3.2069 -1.5427 3.3498 48 1 4.7493 -2.4735 6.1574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181764856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:38 Heat of formation + Delta-G solvation = 22.331747 kcal Electronic energy + Delta-G solvation = -29059.396671 eV Core-core repulsion = 25117.055887 eV Total energy + Delta-G solvation = -3942.340784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.66558 -41.58433 -39.55737 -38.25828 -36.69618 -35.98988 -34.71081 -33.10315 -32.01639 -30.99673 -28.76439 -27.49162 -26.82098 -25.70381 -25.02144 -24.33302 -23.29023 -22.46271 -21.74307 -21.37532 -19.95074 -19.32548 -18.46782 -18.28460 -17.97649 -17.25928 -17.15649 -16.47824 -16.02275 -15.79994 -15.58226 -15.40603 -15.31066 -14.99677 -14.77239 -14.68998 -14.34833 -13.89093 -13.53025 -13.36394 -13.25060 -13.03297 -12.88475 -12.78372 -12.59421 -12.55413 -12.43098 -12.41565 -12.14848 -12.05719 -11.95554 -11.89990 -11.57746 -11.54129 -11.45294 -11.32788 -11.23186 -10.91288 -10.14461 -9.85385 -8.95447 -7.92092 -5.20191 -0.40132 0.75908 1.15074 1.48017 1.49541 1.57850 1.78481 2.05340 2.57638 2.69558 2.88438 3.21212 3.41378 3.45615 3.50121 3.58867 3.73265 3.76338 3.94011 3.97102 4.13177 4.18067 4.23523 4.29368 4.35051 4.43454 4.48032 4.59610 4.68254 4.71862 4.77341 4.79795 4.83740 4.86565 4.93916 4.97177 5.00158 5.07020 5.11414 5.13385 5.24705 5.24813 5.36080 5.40764 5.53200 5.56769 6.19097 6.29627 6.32449 6.73256 7.36348 8.14078 8.34798 9.31563 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.002382 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.800784 B =11750.837652 C =12199.615914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.118 0.882 4 C 0.082 3.918 5 N -0.596 5.596 6 C 0.613 3.387 7 O -0.580 6.580 8 C -0.121 4.121 9 C 0.043 3.957 10 N -0.495 5.495 11 C 0.250 3.750 12 C -0.115 4.115 13 C -0.130 4.130 14 C -0.140 4.140 15 O -0.192 6.192 16 C 0.128 3.872 17 C -0.066 4.066 18 C -0.125 4.125 19 C 0.167 3.833 20 N -0.745 5.745 21 C -0.236 4.236 22 H 0.081 0.919 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.972 3.028 26 H -0.288 1.288 27 H -0.301 1.301 28 H -0.266 1.266 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.150 0.850 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.029 0.971 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.373 0.627 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.787 2.739 -27.542 30.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.136 0.864 4 C -0.039 4.039 5 N -0.328 5.328 6 C 0.402 3.598 7 O -0.461 6.461 8 C -0.176 4.176 9 C -0.100 4.100 10 N -0.224 5.224 11 C 0.046 3.954 12 C -0.134 4.134 13 C -0.167 4.167 14 C -0.178 4.178 15 O -0.078 6.078 16 C 0.007 3.993 17 C -0.067 4.067 18 C -0.182 4.182 19 C 0.040 3.960 20 N -0.388 5.388 21 C -0.368 4.368 22 H 0.099 0.901 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.801 3.199 26 H -0.216 1.216 27 H -0.228 1.228 28 H -0.191 1.191 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.250 0.750 35 H 0.168 0.832 36 H 0.121 0.879 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.205 0.795 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.685 2.534 -27.783 31.074 hybrid contribution 1.141 -1.025 2.310 2.773 sum -12.544 1.509 -25.473 28.434 Atomic orbital electron populations 1.21909 0.93342 1.01444 1.03149 1.22164 0.97180 1.00186 0.91071 0.86435 1.23388 1.03399 0.79009 0.98080 1.48508 1.61257 1.05589 1.17402 1.16078 0.78508 0.82866 0.82365 1.90866 1.54946 1.32357 1.67970 1.22333 1.09213 0.88282 0.97816 1.24570 0.97124 1.00549 0.87720 1.70392 1.16315 1.09780 1.25917 1.26374 0.94945 0.90736 0.83320 1.20579 1.00802 0.98195 0.93845 1.23239 0.99758 1.03503 0.90164 1.23275 0.89560 1.03875 1.01074 1.84460 1.55936 1.38652 1.28712 1.22386 0.97538 0.98404 0.81021 1.21596 0.95163 0.94340 0.95589 1.21791 0.97152 1.00872 0.98428 1.20918 0.94475 0.93182 0.87377 1.42659 1.57223 1.12792 1.26136 1.19649 1.19532 0.96005 1.01630 0.90146 1.25566 1.03521 0.96757 1.01397 1.69836 1.50919 1.10035 1.31584 0.85158 0.78400 0.77128 0.79190 1.21562 1.22826 1.19121 0.91789 0.90112 0.94020 0.87076 0.87148 0.75042 0.83231 0.87898 0.84719 0.84764 0.88677 0.90521 0.93062 0.91008 0.92739 0.95225 0.94910 0.94831 0.79459 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.93 71.98 0.57 -1.82 16 2 C -0.09 -1.64 3.30 -9.89 -0.03 -1.67 16 3 H 0.12 1.76 7.71 -2.39 -0.02 1.74 16 4 C 0.08 1.40 5.40 86.54 0.47 1.87 16 5 N -0.60 -16.56 3.32 -812.61 -2.69 -19.26 16 6 C 0.61 20.50 7.87 86.46 0.68 21.18 16 7 O -0.58 -25.42 17.39 -2.61 -0.05 -25.47 16 8 C -0.12 -3.36 7.10 24.04 0.17 -3.19 16 9 C 0.04 0.87 10.10 83.97 0.85 1.72 16 10 N -0.50 -10.42 10.79 -302.88 -3.27 -13.69 16 11 C 0.25 5.40 7.87 88.29 0.69 6.09 16 12 C -0.12 -1.50 6.33 -11.54 -0.07 -1.57 16 13 C -0.13 -1.05 10.13 30.60 0.31 -0.74 16 14 C -0.14 -1.16 10.23 30.60 0.31 -0.85 16 15 O -0.19 -5.49 10.79 -5.46 -0.06 -5.55 16 16 C 0.13 4.29 5.70 86.53 0.49 4.79 16 17 C -0.07 -1.92 0.73 -51.28 -0.04 -1.95 16 18 C -0.13 -3.98 7.07 71.98 0.51 -3.47 16 19 C 0.17 5.98 4.87 86.38 0.42 6.40 16 20 N -0.74 -36.53 5.13 -343.46 -1.76 -38.29 16 21 C -0.24 -12.89 9.99 84.03 0.84 -12.05 16 22 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 24 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 25 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 H 0.06 1.13 6.84 -2.39 -0.02 1.11 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.84 6.76 -2.39 -0.02 0.82 16 32 H 0.11 1.39 4.57 -2.39 -0.01 1.38 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.23 2.89 5.44 -2.91 -0.02 2.87 16 35 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.08 7.87 -2.39 -0.02 1.07 16 37 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 2.67 7.83 -2.38 -0.02 2.65 16 41 H 0.05 2.10 7.62 -2.39 -0.02 2.08 16 42 H 0.07 2.06 6.89 -2.39 -0.02 2.05 16 43 H 0.05 1.63 6.71 -2.39 -0.02 1.62 16 44 H 0.03 1.16 6.78 -2.39 -0.02 1.14 16 45 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 46 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.37 20.06 6.19 -92.71 -0.57 19.49 16 48 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -78.82 383.93 1.54 -77.28 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.42 Total: 26.41 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.64 Total: 10.57 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -7.44 Total: -131.64 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.10 Total: -31.02 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -78.82 1.54 -77.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181764856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.611 kcal (2) G-P(sol) polarization free energy of solvation -78.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds