Wall clock time and date at job start Tue Mar 31 2020 17:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.30525 * 2 1 4 4 C 1.54388 * 110.43476 * 237.75846 * 2 1 3 5 5 N 1.48139 * 104.61966 * 217.22154 * 4 2 1 6 6 C 1.34784 * 127.83714 * 219.59181 * 5 4 2 7 7 O 1.21474 * 119.99617 * 175.03097 * 6 5 4 8 8 C 1.48450 * 119.99821 * 355.02836 * 6 5 4 9 9 C 1.41153 * 120.53764 * 104.44944 * 8 6 5 10 10 C 1.35265 * 119.86870 * 179.69013 * 9 8 6 11 11 N 1.35708 * 120.99901 * 0.59005 * 10 9 8 12 12 C 1.46500 * 119.43919 * 179.68738 * 11 10 9 13 13 C 1.34604 * 121.11624 * 359.70554 * 11 10 9 14 14 O 1.22011 * 119.95804 * 180.02562 * 13 11 10 15 15 C 1.38298 * 120.54073 * 284.71868 * 8 6 5 16 16 C 1.48147 * 104.32637 * 39.58333 * 5 4 2 17 17 C 1.54289 * 110.33748 * 122.17005 * 2 1 3 18 18 C 1.53001 * 110.34510 * 0.10851 * 17 2 1 19 19 C 1.52999 * 110.34312 * 237.95225 * 17 2 1 20 20 N 1.46501 * 109.47152 * 180.02562 * 19 17 2 21 21 C 1.36939 * 119.99962 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99788 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99795 * 180.02562 * 21 20 19 24 24 N 1.31614 * 119.99736 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00015 * 0.02562 * 23 21 20 26 26 H 1.48510 * 109.47175 * 90.00034 * 25 23 21 27 27 H 1.48506 * 109.46920 * 209.99649 * 25 23 21 28 28 H 1.48497 * 109.47476 * 329.99759 * 25 23 21 29 29 H 1.08991 * 109.47319 * 299.30649 * 1 2 3 30 30 H 1.08999 * 109.46746 * 59.30530 * 1 2 3 31 31 H 1.09005 * 109.47353 * 179.29704 * 1 2 3 32 32 H 1.08997 * 110.40737 * 336.00557 * 4 2 1 33 33 H 1.08998 * 110.40427 * 98.43559 * 4 2 1 34 34 H 1.07996 * 120.06329 * 359.96785 * 9 8 6 35 35 H 1.08000 * 119.50355 * 180.27488 * 10 9 8 36 36 H 1.08999 * 109.46886 * 270.01846 * 12 11 10 37 37 H 1.08996 * 109.47166 * 30.02437 * 12 11 10 38 38 H 1.09001 * 109.46547 * 150.02054 * 12 11 10 39 39 H 1.08007 * 120.49069 * 0.02610 * 15 8 6 40 40 H 1.08996 * 110.41004 * 201.62881 * 16 5 4 41 41 H 1.09005 * 110.50034 * 79.25020 * 16 5 4 42 42 H 1.09007 * 109.46795 * 59.99972 * 18 17 2 43 43 H 1.08999 * 109.47321 * 179.97438 * 18 17 2 44 44 H 1.08995 * 109.47015 * 299.99843 * 18 17 2 45 45 H 1.09002 * 109.47159 * 300.00626 * 19 17 2 46 46 H 1.09002 * 109.46762 * 60.00093 * 19 17 2 47 47 H 0.96996 * 119.99956 * 0.02562 * 20 19 17 48 48 H 0.96996 * 119.99941 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0691 -0.7718 -1.2237 5 7 3.2692 -1.4795 -0.7203 6 6 4.4462 -1.6627 -1.3511 7 8 5.3719 -2.1906 -0.7680 8 6 4.6112 -1.2194 -2.7582 9 6 5.3424 -0.0506 -3.0609 10 6 5.4895 0.3375 -4.3483 11 7 4.9332 -0.3746 -5.3609 12 6 5.1084 0.0807 -6.7423 13 6 4.2231 -1.4918 -5.1174 14 8 3.7326 -2.1160 -6.0439 15 6 4.0462 -1.9418 -3.7934 16 6 2.8824 -1.9400 0.6335 17 6 2.0663 -0.7703 1.2246 18 6 0.9060 -1.3036 2.0674 19 6 2.9649 0.1343 2.0702 20 7 3.4634 -0.6154 3.2260 21 6 4.2929 -0.0076 4.1303 22 1 4.5793 1.0244 3.9917 23 6 4.7657 -0.7182 5.2251 24 7 5.5625 -0.1339 6.0945 25 14 4.2709 -2.5034 5.4643 26 1 5.2524 -3.3848 4.7823 27 1 4.2458 -2.8200 6.9151 28 1 2.9212 -2.7249 4.8860 29 1 -0.3633 0.5030 0.8961 30 1 -0.3633 0.5246 -0.8837 31 1 -0.3634 -1.0276 -0.0126 32 1 1.3272 -1.4870 -1.5789 33 1 2.3422 -0.0792 -2.0197 34 1 5.7873 0.5302 -2.2665 35 1 6.0539 1.2303 -4.5735 36 1 4.2946 0.7552 -7.0084 37 1 6.0596 0.6048 -6.8342 38 1 5.1012 -0.7794 -7.4118 39 1 3.4776 -2.8373 -3.5903 40 1 3.7691 -2.1288 1.2386 41 1 2.2681 -2.8383 0.5702 42 1 0.2971 -1.9761 1.4631 43 1 1.3004 -1.8450 2.9273 44 1 0.2940 -0.4701 2.4119 45 1 3.8070 0.4753 1.4680 46 1 2.3923 0.9955 2.4147 47 1 3.2065 -1.5424 3.3502 48 1 5.8932 -0.6305 6.8593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181942058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:25 Heat of formation + Delta-G solvation = -6.352366 kcal Electronic energy + Delta-G solvation = -29455.549251 eV Core-core repulsion = 25511.964630 eV Total energy + Delta-G solvation = -3943.584620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67488 -40.36969 -38.49719 -37.14476 -35.05520 -34.73271 -33.32484 -31.66203 -30.38537 -30.02636 -28.56477 -27.14600 -26.13611 -25.79886 -24.42510 -23.50414 -22.89518 -21.06425 -19.79344 -18.63027 -18.06185 -17.84495 -17.62245 -17.06683 -16.47817 -16.23886 -15.70717 -15.43585 -14.88168 -14.59881 -14.52651 -14.08478 -13.94962 -13.78059 -13.62599 -13.47114 -13.21510 -12.99225 -12.83572 -12.64603 -12.25253 -12.20158 -12.13454 -12.03469 -11.70811 -11.56831 -11.45564 -11.28452 -10.88429 -10.72853 -10.62534 -10.38858 -10.33940 -10.23203 -10.00199 -9.83915 -9.53290 -8.87908 -8.75437 -8.35968 -7.20170 -5.73981 -3.09092 0.27597 1.42859 2.22921 2.46192 2.76826 3.23226 3.38368 3.43195 3.48289 4.06443 4.16777 4.27739 4.46923 4.61541 4.62192 4.71670 4.77606 4.79498 4.82381 4.96696 5.14522 5.16027 5.23768 5.31780 5.35566 5.38507 5.46528 5.58631 5.60734 5.62091 5.69293 5.74696 5.78917 5.87674 5.92603 5.98018 6.03424 6.09641 6.15472 6.27350 6.36951 6.53225 6.63782 6.64357 6.73740 7.44500 7.62845 7.99479 8.01774 8.44877 9.23657 9.96104 10.15400 11.44666 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003134 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.153870 B = 8931.485927 C = 9684.866192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.085 0.915 4 C 0.106 3.894 5 N -0.610 5.610 6 C 0.574 3.426 7 O -0.514 6.514 8 C -0.003 4.003 9 C -0.200 4.200 10 C 0.134 3.866 11 N -0.498 5.498 12 C 0.058 3.942 13 C 0.516 3.484 14 O -0.549 6.549 15 C -0.209 4.209 16 C 0.110 3.890 17 C -0.080 4.080 18 C -0.136 4.136 19 C 0.174 3.826 20 N -0.753 5.753 21 C -0.241 4.241 22 H 0.089 0.911 23 C 0.005 3.995 24 N -0.935 5.935 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.153 0.847 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.029 0.971 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 3.028 -24.761 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.104 0.896 4 C -0.017 4.017 5 N -0.344 5.344 6 C 0.360 3.640 7 O -0.388 6.388 8 C -0.010 4.010 9 C -0.224 4.224 10 C 0.008 3.992 11 N -0.209 5.209 12 C -0.083 4.083 13 C 0.318 3.682 14 O -0.432 6.432 15 C -0.231 4.231 16 C -0.012 4.012 17 C -0.082 4.082 18 C -0.194 4.194 19 C 0.047 3.953 20 N -0.399 5.399 21 C -0.371 4.371 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.583 5.583 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.172 0.828 35 H 0.187 0.813 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.171 0.829 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.282 2.496 -25.024 26.181 hybrid contribution -0.140 -1.154 0.424 1.238 sum -7.422 1.341 -24.599 25.730 Atomic orbital electron populations 1.21896 0.93960 1.02171 1.01937 1.22127 0.96187 0.99845 0.93396 0.89640 1.22541 0.86685 0.95539 0.96977 1.48821 1.12347 1.55293 1.17899 1.17926 0.81410 0.79415 0.85238 1.90890 1.38727 1.43215 1.66004 1.20438 0.93037 0.93902 0.93616 1.20601 1.06539 0.99117 0.96111 1.21871 0.94275 0.95872 0.87205 1.45395 1.43431 1.23213 1.08904 1.22196 1.03087 1.02241 0.80817 1.16980 0.80226 0.80302 0.90683 1.90961 1.50579 1.55827 1.45817 1.22494 1.06413 1.03901 0.90300 1.22619 1.00317 0.96109 0.82133 1.21780 0.96020 0.95512 0.94864 1.21904 0.96793 1.01143 0.99523 1.20622 0.94005 0.92811 0.87853 1.42740 1.58817 1.11682 1.26676 1.19019 1.19747 0.97477 1.00873 0.89321 1.24647 0.99492 0.97593 0.97317 1.69694 1.37490 1.36226 1.14867 0.86608 0.78295 0.86856 0.77134 1.20918 1.21728 1.20318 0.91573 0.92900 0.92091 0.90734 0.90550 0.82845 0.81293 0.90409 0.89473 0.88706 0.82921 0.88453 0.91125 0.92758 0.91971 0.91656 0.95603 0.95288 0.80577 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 7.94 37.16 0.29 -0.91 16 2 C -0.10 -1.02 3.30 -89.21 -0.29 -1.31 16 3 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 4 C 0.11 1.07 6.43 -2.41 -0.02 1.05 16 5 N -0.61 -8.33 3.32 -170.19 -0.56 -8.90 16 6 C 0.57 8.73 7.39 -12.05 -0.09 8.64 16 7 O -0.51 -10.20 17.35 5.39 0.09 -10.11 16 8 C 0.00 -0.03 4.62 -104.56 -0.48 -0.52 16 9 C -0.20 -1.82 9.78 -39.54 -0.39 -2.21 16 10 C 0.13 0.86 10.25 -16.90 -0.17 0.68 16 11 N -0.50 -4.05 2.98 -127.13 -0.38 -4.43 16 12 C 0.06 0.29 10.34 59.85 0.62 0.90 16 13 C 0.52 6.09 7.42 -15.31 -0.11 5.97 16 14 O -0.55 -8.17 16.62 4.91 0.08 -8.09 16 15 C -0.21 -2.43 9.81 -38.53 -0.38 -2.81 16 16 C 0.11 1.66 5.94 -2.41 -0.01 1.65 16 17 C -0.08 -1.13 0.73 -153.10 -0.11 -1.25 16 18 C -0.14 -1.79 7.10 37.16 0.26 -1.53 16 19 C 0.17 3.27 4.95 -4.04 -0.02 3.25 16 20 N -0.75 -17.68 4.59 -59.91 -0.28 -17.96 16 21 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 22 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 23 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -29.75 13.97 55.49 0.78 -28.98 16 25 Si 0.88 22.45 27.74 -169.99 -4.71 17.73 16 26 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 29 H 0.07 0.58 6.89 -51.93 -0.36 0.23 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.49 6.69 -51.93 -0.35 0.14 16 32 H 0.07 0.65 7.85 -51.93 -0.41 0.25 16 33 H 0.08 0.67 7.51 -51.93 -0.39 0.28 16 34 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.17 0.36 8.02 -52.49 -0.42 -0.06 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.16 8.00 -51.93 -0.42 -0.25 16 38 H 0.09 0.60 7.37 -51.93 -0.38 0.22 16 39 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.10 1.85 6.91 -51.93 -0.36 1.50 16 41 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 42 H 0.05 0.58 6.72 -51.92 -0.35 0.23 16 43 H 0.06 0.97 6.75 -51.93 -0.35 0.62 16 44 H 0.06 0.82 6.84 -51.93 -0.36 0.46 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.36 8.28 3.85 -40.82 -0.16 8.12 16 48 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -37.94 383.26 -7.59 -45.53 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.23 Total: 4.77 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.16 Total: 4.65 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.44 Total: -60.26 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.18 Total: -18.20 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.94 -7.59 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181942058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.176 kcal (2) G-P(sol) polarization free energy of solvation -37.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds