Wall clock time and date at job start Tue Mar 31 2020 17:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.30525 * 2 1 4 4 C 1.54388 * 110.43476 * 237.75846 * 2 1 3 5 5 N 1.48139 * 104.61966 * 217.22154 * 4 2 1 6 6 C 1.34784 * 127.83714 * 219.59181 * 5 4 2 7 7 O 1.21474 * 119.99617 * 175.03097 * 6 5 4 8 8 C 1.48450 * 119.99821 * 355.02836 * 6 5 4 9 9 C 1.41153 * 120.53764 * 104.44944 * 8 6 5 10 10 C 1.35265 * 119.86870 * 179.69013 * 9 8 6 11 11 N 1.35708 * 120.99901 * 0.59005 * 10 9 8 12 12 C 1.46500 * 119.43919 * 179.68738 * 11 10 9 13 13 C 1.34604 * 121.11624 * 359.70554 * 11 10 9 14 14 O 1.22011 * 119.95804 * 180.02562 * 13 11 10 15 15 C 1.38298 * 120.54073 * 284.71868 * 8 6 5 16 16 C 1.48147 * 104.32637 * 39.58333 * 5 4 2 17 17 C 1.54289 * 110.33748 * 122.17005 * 2 1 3 18 18 C 1.53001 * 110.34510 * 0.10851 * 17 2 1 19 19 C 1.52999 * 110.34312 * 237.95225 * 17 2 1 20 20 N 1.46501 * 109.47152 * 180.02562 * 19 17 2 21 21 C 1.36939 * 119.99962 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99788 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99795 * 180.02562 * 21 20 19 24 24 N 1.31614 * 119.99736 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00015 * 0.02562 * 23 21 20 26 26 H 1.48510 * 109.47175 * 90.00034 * 25 23 21 27 27 H 1.48506 * 109.46920 * 209.99649 * 25 23 21 28 28 H 1.48497 * 109.47476 * 329.99759 * 25 23 21 29 29 H 1.08991 * 109.47319 * 299.30649 * 1 2 3 30 30 H 1.08999 * 109.46746 * 59.30530 * 1 2 3 31 31 H 1.09005 * 109.47353 * 179.29704 * 1 2 3 32 32 H 1.08997 * 110.40737 * 336.00557 * 4 2 1 33 33 H 1.08998 * 110.40427 * 98.43559 * 4 2 1 34 34 H 1.07996 * 120.06329 * 359.96785 * 9 8 6 35 35 H 1.08000 * 119.50355 * 180.27488 * 10 9 8 36 36 H 1.08999 * 109.46886 * 270.01846 * 12 11 10 37 37 H 1.08996 * 109.47166 * 30.02437 * 12 11 10 38 38 H 1.09001 * 109.46547 * 150.02054 * 12 11 10 39 39 H 1.08007 * 120.49069 * 0.02610 * 15 8 6 40 40 H 1.08996 * 110.41004 * 201.62881 * 16 5 4 41 41 H 1.09005 * 110.50034 * 79.25020 * 16 5 4 42 42 H 1.09007 * 109.46795 * 59.99972 * 18 17 2 43 43 H 1.08999 * 109.47321 * 179.97438 * 18 17 2 44 44 H 1.08995 * 109.47015 * 299.99843 * 18 17 2 45 45 H 1.09002 * 109.47159 * 300.00626 * 19 17 2 46 46 H 1.09002 * 109.46762 * 60.00093 * 19 17 2 47 47 H 0.96996 * 119.99956 * 0.02562 * 20 19 17 48 48 H 0.96996 * 119.99941 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0691 -0.7718 -1.2237 5 7 3.2692 -1.4795 -0.7203 6 6 4.4462 -1.6627 -1.3511 7 8 5.3719 -2.1906 -0.7680 8 6 4.6112 -1.2194 -2.7582 9 6 5.3424 -0.0506 -3.0609 10 6 5.4895 0.3375 -4.3483 11 7 4.9332 -0.3746 -5.3609 12 6 5.1084 0.0807 -6.7423 13 6 4.2231 -1.4918 -5.1174 14 8 3.7326 -2.1160 -6.0439 15 6 4.0462 -1.9418 -3.7934 16 6 2.8824 -1.9400 0.6335 17 6 2.0663 -0.7703 1.2246 18 6 0.9060 -1.3036 2.0674 19 6 2.9649 0.1343 2.0702 20 7 3.4634 -0.6154 3.2260 21 6 4.2929 -0.0076 4.1303 22 1 4.5793 1.0244 3.9917 23 6 4.7657 -0.7182 5.2251 24 7 5.5625 -0.1339 6.0945 25 14 4.2709 -2.5034 5.4643 26 1 5.2524 -3.3848 4.7823 27 1 4.2458 -2.8200 6.9151 28 1 2.9212 -2.7249 4.8860 29 1 -0.3633 0.5030 0.8961 30 1 -0.3633 0.5246 -0.8837 31 1 -0.3634 -1.0276 -0.0126 32 1 1.3272 -1.4870 -1.5789 33 1 2.3422 -0.0792 -2.0197 34 1 5.7873 0.5302 -2.2665 35 1 6.0539 1.2303 -4.5735 36 1 4.2946 0.7552 -7.0084 37 1 6.0596 0.6048 -6.8342 38 1 5.1012 -0.7794 -7.4118 39 1 3.4776 -2.8373 -3.5903 40 1 3.7691 -2.1288 1.2386 41 1 2.2681 -2.8383 0.5702 42 1 0.2971 -1.9761 1.4631 43 1 1.3004 -1.8450 2.9273 44 1 0.2940 -0.4701 2.4119 45 1 3.8070 0.4753 1.4680 46 1 2.3923 0.9955 2.4147 47 1 3.2065 -1.5424 3.3502 48 1 5.8932 -0.6305 6.8593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181942058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:23 Heat of formation + Delta-G solvation = -33.336051 kcal Electronic energy + Delta-G solvation = -29456.719351 eV Core-core repulsion = 25511.964630 eV Total energy + Delta-G solvation = -3944.754721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.47674 -41.46220 -39.69075 -38.02618 -36.67718 -35.66589 -34.62802 -33.42016 -31.52577 -31.08596 -29.32945 -28.24481 -27.44970 -26.74226 -25.29988 -24.78343 -24.11930 -22.40687 -20.82925 -20.19058 -19.43884 -18.64084 -18.54653 -18.12435 -17.43606 -17.05179 -16.76415 -16.61181 -16.39974 -16.21177 -15.38188 -15.32738 -15.09418 -15.04218 -14.69521 -14.54785 -14.24880 -14.10789 -13.97501 -13.60396 -13.45571 -13.21279 -13.06940 -12.99450 -12.95292 -12.79885 -12.69787 -12.63385 -12.30349 -12.11911 -11.89041 -11.75080 -11.66252 -11.37783 -11.21337 -11.13463 -11.01316 -10.92016 -9.90122 -9.30801 -9.12113 -8.05414 -5.37503 -0.50868 0.65206 1.28938 1.31631 1.37814 1.42869 1.60674 1.72364 2.42446 2.45051 3.10936 3.26476 3.43498 3.54122 3.63713 3.67318 3.74624 3.91892 4.04612 4.12095 4.15261 4.29575 4.32692 4.42043 4.47750 4.50827 4.57293 4.63605 4.68315 4.74567 4.82351 4.83703 4.86815 4.88704 4.98729 5.01407 5.08855 5.11862 5.17916 5.29047 5.37017 5.39682 5.42809 5.64009 5.73042 5.91074 6.18871 6.34900 6.81317 6.83801 7.05808 7.82224 8.00639 9.16493 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003134 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.153870 B = 8931.485927 C = 9684.866192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.083 0.917 4 C 0.106 3.894 5 N -0.609 5.609 6 C 0.568 3.432 7 O -0.575 6.575 8 C 0.003 3.997 9 C -0.227 4.227 10 C 0.174 3.826 11 N -0.491 5.491 12 C 0.051 3.949 13 C 0.509 3.491 14 O -0.591 6.591 15 C -0.227 4.227 16 C 0.106 3.894 17 C -0.072 4.072 18 C -0.133 4.133 19 C 0.173 3.827 20 N -0.754 5.754 21 C -0.230 4.230 22 H 0.055 0.945 23 C -0.063 4.063 24 N -0.984 5.984 25 Si 0.946 3.054 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.244 1.244 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.158 0.842 35 H 0.227 0.773 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.144 0.856 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.074 0.926 45 H 0.007 0.993 46 H 0.032 0.968 47 H 0.365 0.635 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 3.851 -27.592 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.015 4.015 5 N -0.341 5.341 6 C 0.356 3.644 7 O -0.455 6.455 8 C -0.005 4.005 9 C -0.249 4.249 10 C 0.046 3.954 11 N -0.199 5.199 12 C -0.089 4.089 13 C 0.312 3.688 14 O -0.477 6.477 15 C -0.249 4.249 16 C -0.016 4.016 17 C -0.074 4.074 18 C -0.191 4.191 19 C 0.047 3.953 20 N -0.400 5.400 21 C -0.361 4.361 22 H 0.073 0.927 23 C -0.254 4.254 24 N -0.634 5.634 25 Si 0.773 3.227 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.169 1.169 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.175 0.825 35 H 0.243 0.757 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.162 0.838 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.054 0.946 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.199 0.801 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.403 3.363 -27.913 29.646 hybrid contribution 0.575 -1.223 1.233 1.829 sum -8.828 2.140 -26.681 28.185 Atomic orbital electron populations 1.21881 0.91453 1.03221 1.02939 1.22109 0.98074 0.99112 0.91354 0.89816 1.22804 0.85514 0.96101 0.97102 1.48947 1.12988 1.54739 1.17377 1.18537 0.80964 0.78458 0.86437 1.90847 1.40781 1.46083 1.67747 1.20270 0.93861 0.95047 0.91295 1.20743 1.07552 0.98804 0.97813 1.22607 0.91473 0.95828 0.85486 1.45567 1.41566 1.21934 1.10869 1.22527 1.06018 1.02079 0.78296 1.16951 0.80602 0.81199 0.90000 1.90933 1.52717 1.57434 1.46651 1.22323 1.07859 1.04245 0.90514 1.22590 0.98856 0.97634 0.82549 1.21680 0.95373 0.94663 0.95636 1.21914 0.96492 1.01832 0.98812 1.20765 0.94152 0.93675 0.86727 1.42743 1.58094 1.12092 1.27053 1.19018 1.19477 0.96218 1.01414 0.92663 1.25453 1.00168 1.02415 0.97381 1.69869 1.39529 1.38233 1.15809 0.85540 0.79376 0.80799 0.76936 1.21446 1.21728 1.16856 0.91750 0.90777 0.91030 0.88371 0.88819 0.82485 0.75666 0.88750 0.85351 0.90489 0.83812 0.93037 0.88824 0.89404 0.94628 0.90753 0.97540 0.95000 0.80054 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.94 71.98 0.57 -1.17 16 2 C -0.09 -1.61 3.30 -9.88 -0.03 -1.64 16 3 H 0.08 1.61 7.71 -2.39 -0.02 1.59 16 4 C 0.11 1.87 6.43 86.54 0.56 2.42 16 5 N -0.61 -16.41 3.32 -810.67 -2.69 -19.09 16 6 C 0.57 17.76 7.39 86.96 0.64 18.41 16 7 O -0.57 -24.23 17.35 -3.63 -0.06 -24.29 16 8 C 0.00 0.06 4.62 -19.83 -0.09 -0.03 16 9 C -0.23 -3.68 9.78 22.30 0.22 -3.47 16 10 C 0.17 1.50 10.25 83.41 0.86 2.36 16 11 N -0.49 -6.47 2.98 -674.32 -2.01 -8.48 16 12 C 0.05 0.31 10.34 127.77 1.32 1.63 16 13 C 0.51 11.51 7.42 84.93 0.63 12.14 16 14 O -0.59 -17.54 16.62 -5.35 -0.09 -17.63 16 15 C -0.23 -5.26 9.81 22.95 0.23 -5.03 16 16 C 0.11 3.18 5.94 86.54 0.51 3.69 16 17 C -0.07 -1.94 0.73 -51.27 -0.04 -1.98 16 18 C -0.13 -3.16 7.10 71.98 0.51 -2.64 16 19 C 0.17 6.55 4.95 86.38 0.43 6.98 16 20 N -0.75 -36.03 4.59 -343.44 -1.58 -37.61 16 21 C -0.23 -13.58 10.47 84.03 0.88 -12.70 16 22 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 23 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 24 N -0.98 -64.91 13.97 21.65 0.30 -64.60 16 25 Si 0.95 47.25 27.74 68.60 1.90 49.15 16 26 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.24 -10.75 6.52 99.48 0.65 -10.11 16 29 H 0.06 0.88 6.89 -2.39 -0.02 0.86 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.79 6.69 -2.38 -0.02 0.77 16 32 H 0.10 1.35 7.85 -2.39 -0.02 1.33 16 33 H 0.09 1.38 7.51 -2.39 -0.02 1.36 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.23 -0.56 8.02 -2.91 -0.02 -0.58 16 36 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.13 -0.24 8.00 -2.39 -0.02 -0.26 16 38 H 0.08 0.83 7.37 -2.39 -0.02 0.81 16 39 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.05 2.03 6.91 -2.39 -0.02 2.02 16 41 H 0.09 2.35 7.83 -2.38 -0.02 2.33 16 42 H 0.09 1.51 6.72 -2.38 -0.02 1.49 16 43 H 0.03 1.03 6.75 -2.39 -0.02 1.02 16 44 H 0.07 1.64 6.84 -2.39 -0.02 1.62 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.37 16.78 3.85 -92.71 -0.36 16.42 16 48 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -90.63 383.26 3.99 -86.64 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.56 Total: 20.31 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 7.66 Total: 15.61 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -5.97 Total: -129.79 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -0.15 Total: -41.92 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.90 Total: 49.15 kcal Total: -90.63 3.99 -86.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181942058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.308 kcal (2) G-P(sol) polarization free energy of solvation -90.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds