Wall clock time and date at job start Tue Mar 31 2020 17:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35494 * 117.00187 * 2 1 4 4 C 1.39166 * 119.52551 * 180.02562 * 3 2 1 5 5 C 1.37955 * 119.26480 * 180.02562 * 4 3 2 6 6 C 1.40283 * 118.35879 * 0.02562 * 5 4 3 7 7 C 1.47612 * 120.50146 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99829 * 338.85092 * 7 6 5 9 9 N 1.34776 * 120.00110 * 158.84704 * 7 6 5 10 10 C 1.48418 * 127.82057 * 353.93366 * 9 7 6 11 11 C 1.54389 * 104.48147 * 219.57842 * 10 9 7 12 12 H 1.09003 * 110.34422 * 95.02972 * 11 10 9 13 13 C 1.53003 * 110.34343 * 217.18190 * 11 10 9 14 14 C 1.54280 * 105.05459 * 336.10602 * 11 10 9 15 15 C 1.53005 * 110.34655 * 241.18297 * 14 11 10 16 16 C 1.52999 * 110.34398 * 119.02840 * 14 11 10 17 17 N 1.46503 * 109.47418 * 180.02562 * 16 14 11 18 18 C 1.36934 * 120.00185 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00258 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99845 * 180.02562 * 18 17 16 21 21 N 1.31612 * 120.00332 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99966 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47144 * 89.99328 * 22 20 18 24 24 H 1.48492 * 109.47138 * 209.99592 * 22 20 18 25 25 H 1.48499 * 109.46926 * 329.99816 * 22 20 18 26 26 C 1.48148 * 127.83728 * 173.89998 * 9 7 6 27 27 C 1.39523 * 118.99915 * 0.25163 * 6 5 4 28 28 N 1.31662 * 120.63064 * 359.47444 * 27 6 5 29 29 H 1.09003 * 109.46841 * 300.00424 * 1 2 3 30 30 H 1.09001 * 109.46654 * 59.99699 * 1 2 3 31 31 H 1.08992 * 109.47319 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.36937 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.82365 * 180.02562 * 5 4 3 34 34 H 1.08996 * 110.45117 * 100.85400 * 10 9 7 35 35 H 1.08998 * 110.49551 * 338.32524 * 10 9 7 36 36 H 1.09003 * 109.47132 * 177.12140 * 13 11 10 37 37 H 1.08996 * 109.47413 * 297.12612 * 13 11 10 38 38 H 1.09005 * 109.46998 * 57.12479 * 13 11 10 39 39 H 1.08996 * 109.46930 * 59.99523 * 15 14 11 40 40 H 1.08998 * 109.47069 * 180.02562 * 15 14 11 41 41 H 1.09004 * 109.46727 * 299.99776 * 15 14 11 42 42 H 1.08993 * 109.47162 * 300.00130 * 16 14 11 43 43 H 1.08999 * 109.47150 * 60.00248 * 16 14 11 44 44 H 0.97000 * 119.99605 * 0.02562 * 17 16 14 45 45 H 0.96997 * 120.00810 * 180.02562 * 21 20 18 46 46 H 1.08997 * 110.40763 * 21.63192 * 26 9 7 47 47 H 1.08997 * 110.50395 * 259.24445 * 26 9 7 48 48 H 1.08004 * 119.68301 * 179.75086 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2685 -0.0005 5 6 4.0553 2.5005 0.0000 6 6 3.2526 3.6511 0.0016 7 6 3.8671 4.9932 0.0028 8 8 5.0132 5.1367 0.3824 9 7 3.1576 6.0595 -0.4168 10 6 1.8045 6.0696 -1.0265 11 6 1.8895 7.1385 -2.1373 12 1 2.1187 6.6720 -3.0954 13 6 0.5760 7.9181 -2.2270 14 6 3.0394 8.0729 -1.7071 15 6 2.5182 9.4961 -1.4976 16 6 4.1527 8.0643 -2.7566 17 7 5.2336 8.9562 -2.3293 18 6 6.3448 9.1102 -3.1144 19 1 6.4244 8.5746 -4.0489 20 6 7.3692 9.9548 -2.7092 21 7 7.2722 10.6080 -1.5707 22 14 8.8849 10.1656 -3.7806 23 1 8.6691 11.2885 -4.7281 24 1 10.0604 10.4609 -2.9226 25 1 9.1300 8.9150 -4.5428 26 6 3.5513 7.4871 -0.3736 27 6 1.8648 3.5076 0.0080 28 7 1.3140 2.3118 0.0020 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 4.0210 0.3617 -0.0005 33 1 5.1325 2.5774 -0.0008 34 1 1.0553 6.3497 -0.2862 35 1 1.5715 5.0946 -1.4545 36 1 0.6690 8.7014 -2.9793 37 1 -0.2305 7.2401 -2.5061 38 1 0.3538 8.3681 -1.2594 39 1 1.7537 9.4924 -0.7208 40 1 3.3412 10.1435 -1.1948 41 1 2.0886 9.8664 -2.4284 42 1 4.5400 7.0516 -2.8670 43 1 3.7544 8.4072 -3.7115 44 1 5.1623 9.4369 -1.4898 45 1 7.9878 11.1984 -1.2877 46 1 4.6353 7.5806 -0.3086 47 1 3.0760 7.9888 0.4693 48 1 1.2363 4.3860 0.0134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182056123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:04 Heat of formation + Delta-G solvation = -30.112159 kcal Electronic energy + Delta-G solvation = -29239.870996 eV Core-core repulsion = 25295.256074 eV Total energy + Delta-G solvation = -3944.614922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.12213 -41.18652 -39.64895 -38.62571 -36.54734 -34.80751 -33.69307 -33.16379 -32.25068 -31.06623 -28.65395 -28.09384 -27.30940 -26.75834 -25.46638 -24.76927 -24.11938 -22.47283 -21.03459 -19.75193 -19.49275 -19.26359 -18.63552 -17.78403 -17.23690 -17.00226 -16.74383 -16.59026 -16.10864 -15.81970 -15.33940 -15.23923 -15.19087 -15.08099 -14.66734 -14.54057 -14.32662 -14.27956 -13.93765 -13.86245 -13.19335 -13.03105 -12.92350 -12.87316 -12.75737 -12.61673 -12.60752 -12.32326 -12.19929 -12.09237 -11.96593 -11.61818 -11.30157 -11.26357 -11.15622 -11.12659 -10.96182 -10.72965 -9.87615 -9.62393 -8.99767 -7.96772 -5.24385 -0.40282 0.04564 1.42763 1.45472 1.53502 1.66286 1.82235 2.00053 2.53558 2.64847 3.07528 3.31451 3.36662 3.54807 3.63694 3.70948 3.78710 3.92399 3.99074 4.17127 4.20428 4.34696 4.38803 4.44342 4.46617 4.50056 4.53649 4.62519 4.65643 4.73425 4.80277 4.82091 4.83959 4.90055 4.98671 5.02740 5.07572 5.15487 5.18231 5.24532 5.33326 5.42555 5.46939 5.48467 5.70105 6.06088 6.25891 6.47578 6.55797 7.01721 7.32371 8.08940 8.32708 9.26771 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.002931 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.417493 B = 9550.388343 C =10730.922020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.334 3.666 4 C -0.191 4.191 5 C 0.007 3.993 6 C -0.232 4.232 7 C 0.577 3.423 8 O -0.588 6.588 9 N -0.615 5.615 10 C 0.091 3.909 11 C -0.090 4.090 12 H 0.076 0.924 13 C -0.137 4.137 14 C -0.068 4.068 15 C -0.126 4.126 16 C 0.169 3.831 17 N -0.738 5.738 18 C -0.245 4.245 19 H 0.068 0.932 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.275 1.275 26 C 0.116 3.884 27 C 0.177 3.823 28 N -0.544 5.544 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.030 0.970 41 H 0.068 0.932 42 H -0.005 1.005 43 H 0.024 0.976 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.043 0.957 47 H 0.091 0.909 48 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.675 -18.321 2.965 29.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.216 6.216 3 C 0.155 3.845 4 C -0.211 4.211 5 C -0.019 4.019 6 C -0.237 4.237 7 C 0.368 3.632 8 O -0.469 6.469 9 N -0.346 5.346 10 C -0.030 4.030 11 C -0.109 4.109 12 H 0.095 0.905 13 C -0.194 4.194 14 C -0.069 4.069 15 C -0.184 4.184 16 C 0.043 3.957 17 N -0.381 5.381 18 C -0.377 4.377 19 H 0.086 0.914 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.801 3.199 23 H -0.208 1.208 24 H -0.222 1.222 25 H -0.200 1.200 26 C -0.007 4.007 27 C 0.020 3.980 28 N -0.268 5.268 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.142 0.858 32 H 0.188 0.812 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.013 0.987 43 H 0.042 0.958 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.109 0.891 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -22.739 -18.765 3.044 29.638 hybrid contribution 2.435 0.787 -0.212 2.568 sum -20.304 -17.977 2.831 27.266 Atomic orbital electron populations 1.23184 0.75167 1.05057 1.02816 1.86224 1.24956 1.23805 1.86634 1.20331 0.89868 0.85206 0.89087 1.21209 0.92048 0.99643 1.08241 1.21611 1.01317 0.90213 0.88749 1.20614 0.96225 0.93002 1.13896 1.18011 0.84357 0.83955 0.76903 1.90814 1.19280 1.86028 1.50817 1.48909 1.19463 1.05917 1.60308 1.23274 0.82924 1.00826 0.95971 1.22140 0.95398 0.94905 0.98501 0.90523 1.21885 0.94170 1.00142 1.03232 1.21607 0.94847 0.97071 0.93411 1.21829 1.00439 0.93282 1.02835 1.20765 0.87939 0.91445 0.95568 1.42559 1.18243 1.52793 1.24554 1.19569 0.96277 1.20442 1.01455 0.91360 1.25533 1.01795 1.00372 0.98972 1.69798 1.34657 1.33702 1.23606 0.85169 0.79097 0.77944 0.77737 1.20817 1.22160 1.19988 1.22434 1.00169 0.80051 0.98062 1.23456 0.91022 0.95005 0.88525 1.67459 1.40239 0.98531 1.20598 0.91988 0.91873 0.85777 0.81166 0.83444 0.86671 0.88127 0.92195 0.90340 0.90702 0.89408 0.95052 0.91293 0.98746 0.95821 0.79014 0.93987 0.93809 0.89125 0.78516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.37 113.37 1.18 1.51 16 2 O -0.31 -5.24 10.46 -87.95 -0.92 -6.16 16 3 C 0.33 6.53 7.49 84.83 0.64 7.16 16 4 C -0.19 -3.65 10.02 22.43 0.22 -3.42 16 5 C 0.01 0.16 9.70 22.70 0.22 0.38 16 6 C -0.23 -5.88 5.77 -20.00 -0.12 -6.00 16 7 C 0.58 19.31 7.74 86.72 0.67 19.98 16 8 O -0.59 -26.10 16.86 -3.97 -0.07 -26.16 16 9 N -0.61 -17.66 3.32 -810.91 -2.69 -20.35 16 10 C 0.09 1.60 4.63 86.48 0.40 2.00 16 11 C -0.09 -1.83 3.30 -9.89 -0.03 -1.86 16 12 H 0.08 1.68 7.71 -2.39 -0.02 1.67 16 13 C -0.14 -1.85 7.93 71.98 0.57 -1.28 16 14 C -0.07 -2.05 0.73 -51.27 -0.04 -2.09 16 15 C -0.13 -3.49 7.11 71.98 0.51 -2.98 16 16 C 0.17 7.07 4.95 86.38 0.43 7.50 16 17 N -0.74 -39.11 4.79 -343.46 -1.64 -40.76 16 18 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 19 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.07 -4.47 5.50 84.86 0.47 -4.01 16 21 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 22 Si 0.97 48.37 29.55 68.60 2.03 50.40 16 23 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 25 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 26 C 0.12 3.86 5.94 86.53 0.51 4.37 16 27 C 0.18 3.42 9.18 85.03 0.78 4.20 16 28 N -0.54 -10.54 9.18 -307.82 -2.82 -13.36 16 29 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 30 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.15 3.59 7.87 -2.91 -0.02 3.57 16 34 H 0.12 1.26 7.58 -2.39 -0.02 1.24 16 35 H 0.10 1.46 5.70 -2.39 -0.01 1.45 16 36 H 0.06 0.92 6.89 -2.39 -0.02 0.90 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.85 6.69 -2.38 -0.02 0.84 16 39 H 0.09 1.77 6.72 -2.39 -0.02 1.76 16 40 H 0.03 1.10 6.74 -2.39 -0.02 1.09 16 41 H 0.07 1.78 6.84 -2.38 -0.02 1.76 16 42 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.38 20.95 5.99 -92.71 -0.55 20.40 16 45 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.04 1.99 6.90 -2.39 -0.02 1.97 16 47 H 0.09 2.59 7.83 -2.39 -0.02 2.57 16 48 H 0.20 2.70 4.80 -2.91 -0.01 2.68 16 Total: -1.00 -80.70 380.10 1.84 -78.85 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.43 Total: 26.78 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 7.25 Total: 11.84 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -6.88 Total: -135.55 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.99 Total: -32.32 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Total: -80.70 1.84 -78.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182056123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.739 kcal (2) G-P(sol) polarization free energy of solvation -80.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds