Wall clock time and date at job start Tue Mar 31 2020 17:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.30705 * 2 1 4 4 C 1.54798 * 110.61595 * 237.82493 * 2 1 3 5 5 N 1.48147 * 104.41725 * 265.18034 * 4 2 1 6 6 C 1.34774 * 127.83502 * 140.36521 * 5 4 2 7 7 O 1.21616 * 120.00331 * 185.01988 * 6 5 4 8 8 C 1.47292 * 120.00138 * 5.02139 * 6 5 4 9 9 C 1.37987 * 120.88274 * 34.48530 * 8 6 5 10 10 N 1.34337 * 120.37516 * 180.02562 * 9 8 6 11 11 C 1.46500 * 118.80856 * 179.97438 * 10 9 8 12 12 C 1.35592 * 122.39007 * 359.66893 * 10 9 8 13 13 C 1.34872 * 121.79177 * 0.63181 * 12 10 9 14 14 C 1.41667 * 119.34455 * 359.41056 * 13 12 10 15 15 O 1.22082 * 121.07109 * 180.25388 * 14 13 12 16 16 C 1.48141 * 104.32796 * 320.10945 * 5 4 2 17 17 C 1.54290 * 110.34196 * 122.18118 * 2 1 3 18 18 C 1.53004 * 110.34074 * 0.10411 * 17 2 1 19 19 C 1.53002 * 110.34109 * 237.84786 * 17 2 1 20 20 N 1.46498 * 109.47036 * 183.00748 * 19 17 2 21 21 C 1.36930 * 119.99892 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00408 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00344 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99749 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00573 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47127 * 59.99561 * 25 23 21 27 27 H 1.48501 * 109.47047 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46957 * 299.99968 * 25 23 21 29 29 H 1.08993 * 109.47143 * 297.82194 * 1 2 3 30 30 H 1.09010 * 109.46621 * 57.82573 * 1 2 3 31 31 H 1.08999 * 109.47199 * 177.81754 * 1 2 3 32 32 H 1.08996 * 110.54510 * 146.44123 * 4 2 1 33 33 H 1.09002 * 110.45844 * 23.87826 * 4 2 1 34 34 H 1.08004 * 119.81446 * 0.02562 * 9 8 6 35 35 H 1.08999 * 109.47210 * 89.99597 * 11 10 9 36 36 H 1.09004 * 109.47064 * 210.00186 * 11 10 9 37 37 H 1.08994 * 109.47176 * 329.99724 * 11 10 9 38 38 H 1.07998 * 119.10161 * 180.32029 * 12 10 9 39 39 H 1.08006 * 120.32649 * 179.68809 * 13 12 10 40 40 H 1.08995 * 110.41497 * 158.63063 * 16 5 4 41 41 H 1.09010 * 110.40576 * 281.06430 * 16 5 4 42 42 H 1.09000 * 109.46879 * 176.99428 * 18 17 2 43 43 H 1.09005 * 109.46523 * 296.99188 * 18 17 2 44 44 H 1.08994 * 109.46990 * 56.99395 * 18 17 2 45 45 H 1.09000 * 109.46932 * 303.00568 * 19 17 2 46 46 H 1.09001 * 109.47225 * 63.00250 * 19 17 2 47 47 H 0.97007 * 120.00004 * 359.97438 * 20 19 17 48 48 H 0.96999 * 120.00365 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0750 -0.7715 -1.2263 5 7 2.3177 -2.1429 -0.7213 6 6 2.0834 -3.3101 -1.3531 7 8 2.2519 -4.3629 -0.7680 8 6 1.6233 -3.3108 -2.7523 9 6 2.0587 -2.3497 -3.6415 10 7 1.6321 -2.3596 -4.9153 11 6 2.1159 -1.3226 -5.8300 12 6 0.7746 -3.2982 -5.3868 13 6 0.2867 -4.2760 -4.5963 14 6 0.6872 -4.3360 -3.2388 15 8 0.2688 -5.2103 -2.4964 16 6 2.8823 -1.9402 0.6332 17 6 2.0663 -0.7705 1.2244 18 6 0.9060 -1.3039 2.0672 19 6 2.9670 0.1332 2.0688 20 7 3.5224 -0.6363 3.1848 21 6 4.3630 -0.0326 4.0814 22 1 4.6170 1.0108 3.9656 23 6 4.8897 -0.7617 5.1387 24 7 4.5806 -2.0334 5.2797 25 14 6.0371 0.0616 6.3614 26 1 5.3313 1.1899 7.0202 27 1 6.4574 -0.9258 7.3880 28 1 7.2341 0.5752 5.6485 29 1 -0.3633 0.4796 0.9088 30 1 -0.3633 0.5473 -0.8700 31 1 -0.3633 -1.0269 -0.0391 32 1 3.0058 -0.3252 -1.5763 33 1 1.3351 -0.7866 -2.0266 34 1 2.7465 -1.5851 -3.3116 35 1 3.0286 -1.6652 -6.3176 36 1 1.3553 -1.1194 -6.5839 37 1 2.3238 -0.4115 -5.2690 38 1 0.4701 -3.2588 -6.4222 39 1 -0.3992 -5.0087 -4.9955 40 1 2.7524 -2.8379 1.2376 41 1 3.9373 -1.6734 0.5692 42 1 1.2996 -1.8901 2.8976 43 1 0.3250 -0.4676 2.4560 44 1 0.2671 -1.9339 1.4484 45 1 3.7797 0.5155 1.4510 46 1 2.3829 0.9674 2.4575 47 1 3.2940 -1.5733 3.2891 48 1 4.9483 -2.5429 6.0186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182071065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:35 Heat of formation + Delta-G solvation = -6.421907 kcal Electronic energy + Delta-G solvation = -29593.217520 eV Core-core repulsion = 25649.629884 eV Total energy + Delta-G solvation = -3943.587636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.35788 -40.01740 -38.34695 -37.48895 -34.77244 -33.28054 -32.82252 -32.02575 -31.43634 -29.54676 -27.69294 -27.13556 -25.83068 -25.50272 -24.46143 -23.12053 -22.94971 -21.17775 -19.87221 -18.53131 -17.98151 -17.63131 -17.16742 -16.81814 -16.25967 -15.89749 -15.67987 -15.18736 -14.64037 -14.50539 -14.16889 -14.13864 -14.00489 -13.67240 -13.57107 -13.44794 -13.20932 -13.00629 -12.85781 -12.71990 -12.45269 -12.38780 -12.13883 -11.87476 -11.46370 -11.22751 -11.19625 -10.95301 -10.76480 -10.40860 -10.27305 -10.17577 -10.04927 -9.85529 -9.82468 -9.56960 -9.30988 -8.83071 -8.48449 -8.19119 -6.87033 -5.70458 -2.99751 0.67884 1.04230 2.01623 2.92886 3.10360 3.47090 3.51188 3.53150 3.67141 3.85315 4.04863 4.30757 4.40249 4.46031 4.58411 4.60001 4.70567 4.75588 4.86923 4.92897 5.03435 5.27653 5.34482 5.35808 5.47561 5.48433 5.55229 5.60956 5.69502 5.83228 5.94051 5.99235 6.02413 6.16283 6.21345 6.24354 6.26862 6.31330 6.38390 6.42797 6.50587 6.67348 6.74943 6.82352 6.94093 7.73233 7.77059 7.99522 8.46130 8.47853 9.58795 10.16911 10.51236 11.51993 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.002805 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.818787 B = 9979.871950 C =10339.101025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.087 0.913 4 C 0.099 3.901 5 N -0.623 5.623 6 C 0.594 3.406 7 O -0.513 6.513 8 C -0.286 4.286 9 C 0.163 3.837 10 N -0.478 5.478 11 C 0.055 3.945 12 C 0.127 3.873 13 C -0.268 4.268 14 C 0.407 3.593 15 O -0.485 6.485 16 C 0.121 3.879 17 C -0.075 4.075 18 C -0.132 4.132 19 C 0.170 3.830 20 N -0.730 5.730 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.019 0.981 46 H 0.022 0.978 47 H 0.386 0.614 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 6.761 -29.384 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.105 0.895 4 C -0.025 4.025 5 N -0.358 5.358 6 C 0.382 3.618 7 O -0.387 6.387 8 C -0.297 4.297 9 C 0.033 3.967 10 N -0.165 5.165 11 C -0.086 4.086 12 C 0.003 3.997 13 C -0.292 4.292 14 C 0.293 3.707 15 O -0.366 6.366 16 C 0.000 4.000 17 C -0.076 4.076 18 C -0.189 4.189 19 C 0.042 3.958 20 N -0.375 5.375 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.186 0.814 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.181 0.819 39 H 0.171 0.829 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.039 0.961 47 H 0.220 0.780 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.385 5.830 -28.766 30.525 hybrid contribution 0.717 0.366 0.597 1.002 sum -7.668 6.196 -28.169 29.844 Atomic orbital electron populations 1.21899 0.94544 1.02020 1.01429 1.22188 0.96229 0.99301 0.93815 0.89482 1.22692 0.99781 0.82662 0.97343 1.48946 1.63962 1.04667 1.18208 1.17043 0.77582 0.82413 0.84755 1.90856 1.51001 1.30196 1.66693 1.22482 1.09840 1.02096 0.95273 1.22365 0.94797 0.96727 0.82779 1.42662 1.38660 1.25736 1.09411 1.22482 1.01690 0.90377 0.94089 1.21688 0.89943 0.88529 0.99576 1.22456 1.07882 1.02667 0.96197 1.18198 0.80640 0.83814 0.88077 1.90830 1.52362 1.34176 1.59192 1.22469 0.96957 0.99082 0.81521 1.21705 0.96271 0.95174 0.94451 1.21863 0.96866 1.00688 0.99508 1.20697 0.93229 0.92812 0.89109 1.42392 1.55929 1.11089 1.28120 1.19143 1.19796 0.94581 1.03771 0.91341 1.24743 1.01036 0.95890 0.99188 1.69653 1.48361 1.06976 1.32883 0.86288 0.80792 0.78094 0.81089 1.21360 1.21734 1.21362 0.91779 0.93421 0.92280 0.91141 0.90835 0.81361 0.90103 0.88926 0.88939 0.81876 0.82910 0.89508 0.90383 0.91557 0.92584 0.93186 0.96338 0.96072 0.77981 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.95 37.16 0.30 -1.26 16 2 C -0.10 -1.13 3.30 -89.00 -0.29 -1.42 16 3 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 4 C 0.10 1.02 4.79 -2.19 -0.01 1.01 16 5 N -0.62 -9.37 3.31 -170.37 -0.56 -9.93 16 6 C 0.59 10.48 7.51 -12.58 -0.09 10.39 16 7 O -0.51 -11.87 16.50 -8.71 -0.14 -12.01 16 8 C -0.29 -3.90 5.67 -102.71 -0.58 -4.48 16 9 C 0.16 1.27 8.18 -16.55 -0.14 1.13 16 10 N -0.48 -2.19 2.97 -124.39 -0.37 -2.56 16 11 C 0.06 0.00 10.52 59.85 0.63 0.63 16 12 C 0.13 0.63 10.17 -17.08 -0.17 0.46 16 13 C -0.27 -2.52 10.01 -39.47 -0.40 -2.91 16 14 C 0.41 6.19 6.94 -34.68 -0.24 5.95 16 15 O -0.48 -10.00 16.92 -9.13 -0.15 -10.16 16 16 C 0.12 2.13 5.56 -2.41 -0.01 2.12 16 17 C -0.07 -1.20 0.73 -153.10 -0.11 -1.31 16 18 C -0.13 -2.26 7.08 37.16 0.26 -1.99 16 19 C 0.17 3.28 4.85 -4.04 -0.02 3.26 16 20 N -0.73 -18.27 5.12 -59.91 -0.31 -18.58 16 21 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 25 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H 0.06 0.72 6.89 -51.93 -0.36 0.36 16 30 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.06 0.75 6.72 -51.93 -0.35 0.40 16 32 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 33 H 0.07 0.60 6.10 -51.93 -0.32 0.29 16 34 H 0.17 0.91 6.09 -52.48 -0.32 0.59 16 35 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 36 H 0.09 -0.18 7.96 -51.93 -0.41 -0.60 16 37 H 0.09 -0.10 7.96 -51.93 -0.41 -0.52 16 38 H 0.16 0.09 7.98 -52.49 -0.42 -0.33 16 39 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.09 1.81 7.56 -51.93 -0.39 1.42 16 41 H 0.08 1.42 7.86 -51.92 -0.41 1.01 16 42 H 0.07 1.33 7.01 -51.93 -0.36 0.96 16 43 H 0.06 0.89 6.98 -51.93 -0.36 0.53 16 44 H 0.05 0.83 6.62 -51.93 -0.34 0.49 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.39 10.33 6.28 -40.82 -0.26 10.07 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -41.08 381.92 -8.40 -49.48 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.19 Total: 4.14 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.13 Total: 4.22 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.52 Total: -59.03 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.30 Total: -22.17 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -41.08 -8.40 -49.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182071065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.059 kcal (2) G-P(sol) polarization free energy of solvation -41.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds