Wall clock time and date at job start Tue Mar 31 2020 17:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.30705 * 2 1 4 4 C 1.54798 * 110.61595 * 237.82493 * 2 1 3 5 5 N 1.48147 * 104.41725 * 265.18034 * 4 2 1 6 6 C 1.34774 * 127.83502 * 140.36521 * 5 4 2 7 7 O 1.21616 * 120.00331 * 185.01988 * 6 5 4 8 8 C 1.47292 * 120.00138 * 5.02139 * 6 5 4 9 9 C 1.37987 * 120.88274 * 34.48530 * 8 6 5 10 10 N 1.34337 * 120.37516 * 180.02562 * 9 8 6 11 11 C 1.46500 * 118.80856 * 179.97438 * 10 9 8 12 12 C 1.35592 * 122.39007 * 359.66893 * 10 9 8 13 13 C 1.34872 * 121.79177 * 0.63181 * 12 10 9 14 14 C 1.41667 * 119.34455 * 359.41056 * 13 12 10 15 15 O 1.22082 * 121.07109 * 180.25388 * 14 13 12 16 16 C 1.48141 * 104.32796 * 320.10945 * 5 4 2 17 17 C 1.54290 * 110.34196 * 122.18118 * 2 1 3 18 18 C 1.53004 * 110.34074 * 0.10411 * 17 2 1 19 19 C 1.53002 * 110.34109 * 237.84786 * 17 2 1 20 20 N 1.46498 * 109.47036 * 183.00748 * 19 17 2 21 21 C 1.36930 * 119.99892 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00408 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00344 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99749 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00573 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47127 * 59.99561 * 25 23 21 27 27 H 1.48501 * 109.47047 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46957 * 299.99968 * 25 23 21 29 29 H 1.08993 * 109.47143 * 297.82194 * 1 2 3 30 30 H 1.09010 * 109.46621 * 57.82573 * 1 2 3 31 31 H 1.08999 * 109.47199 * 177.81754 * 1 2 3 32 32 H 1.08996 * 110.54510 * 146.44123 * 4 2 1 33 33 H 1.09002 * 110.45844 * 23.87826 * 4 2 1 34 34 H 1.08004 * 119.81446 * 0.02562 * 9 8 6 35 35 H 1.08999 * 109.47210 * 89.99597 * 11 10 9 36 36 H 1.09004 * 109.47064 * 210.00186 * 11 10 9 37 37 H 1.08994 * 109.47176 * 329.99724 * 11 10 9 38 38 H 1.07998 * 119.10161 * 180.32029 * 12 10 9 39 39 H 1.08006 * 120.32649 * 179.68809 * 13 12 10 40 40 H 1.08995 * 110.41497 * 158.63063 * 16 5 4 41 41 H 1.09010 * 110.40576 * 281.06430 * 16 5 4 42 42 H 1.09000 * 109.46879 * 176.99428 * 18 17 2 43 43 H 1.09005 * 109.46523 * 296.99188 * 18 17 2 44 44 H 1.08994 * 109.46990 * 56.99395 * 18 17 2 45 45 H 1.09000 * 109.46932 * 303.00568 * 19 17 2 46 46 H 1.09001 * 109.47225 * 63.00250 * 19 17 2 47 47 H 0.97007 * 120.00004 * 359.97438 * 20 19 17 48 48 H 0.96999 * 120.00365 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0750 -0.7715 -1.2263 5 7 2.3177 -2.1429 -0.7213 6 6 2.0834 -3.3101 -1.3531 7 8 2.2519 -4.3629 -0.7680 8 6 1.6233 -3.3108 -2.7523 9 6 2.0587 -2.3497 -3.6415 10 7 1.6321 -2.3596 -4.9153 11 6 2.1159 -1.3226 -5.8300 12 6 0.7746 -3.2982 -5.3868 13 6 0.2867 -4.2760 -4.5963 14 6 0.6872 -4.3360 -3.2388 15 8 0.2688 -5.2103 -2.4964 16 6 2.8823 -1.9402 0.6332 17 6 2.0663 -0.7705 1.2244 18 6 0.9060 -1.3039 2.0672 19 6 2.9670 0.1332 2.0688 20 7 3.5224 -0.6363 3.1848 21 6 4.3630 -0.0326 4.0814 22 1 4.6170 1.0108 3.9656 23 6 4.8897 -0.7617 5.1387 24 7 4.5806 -2.0334 5.2797 25 14 6.0371 0.0616 6.3614 26 1 5.3313 1.1899 7.0202 27 1 6.4574 -0.9258 7.3880 28 1 7.2341 0.5752 5.6485 29 1 -0.3633 0.4796 0.9088 30 1 -0.3633 0.5473 -0.8700 31 1 -0.3633 -1.0269 -0.0391 32 1 3.0058 -0.3252 -1.5763 33 1 1.3351 -0.7866 -2.0266 34 1 2.7465 -1.5851 -3.3116 35 1 3.0286 -1.6652 -6.3176 36 1 1.3553 -1.1194 -6.5839 37 1 2.3238 -0.4115 -5.2690 38 1 0.4701 -3.2588 -6.4222 39 1 -0.3992 -5.0087 -4.9955 40 1 2.7524 -2.8379 1.2376 41 1 3.9373 -1.6734 0.5692 42 1 1.2996 -1.8901 2.8976 43 1 0.3250 -0.4676 2.4560 44 1 0.2671 -1.9339 1.4484 45 1 3.7797 0.5155 1.4510 46 1 2.3829 0.9674 2.4575 47 1 3.2940 -1.5733 3.2891 48 1 4.9483 -2.5429 6.0186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182071065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:33 Heat of formation + Delta-G solvation = -37.622349 kcal Electronic energy + Delta-G solvation = -29594.570473 eV Core-core repulsion = 25649.629884 eV Total energy + Delta-G solvation = -3944.940588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.14805 -41.13820 -39.46938 -38.69542 -36.48099 -34.74652 -33.49490 -33.06457 -32.87951 -31.14679 -28.72831 -27.79546 -27.17681 -26.71112 -25.60691 -24.72299 -23.73758 -22.48062 -20.91237 -19.86389 -19.26409 -18.64190 -18.19500 -17.87569 -17.21850 -16.97116 -16.55336 -16.38581 -16.22491 -15.60070 -15.40734 -15.34462 -15.19933 -14.89030 -14.72410 -14.63997 -14.44783 -14.14651 -13.87725 -13.55827 -13.46529 -13.18142 -13.10206 -13.03265 -12.83317 -12.65445 -12.58490 -12.47793 -12.42966 -12.13757 -11.94220 -11.50324 -11.40796 -11.23339 -11.16945 -10.89630 -10.66697 -10.41534 -9.75355 -9.04143 -8.95851 -7.91234 -5.20408 -0.12179 0.37453 1.46983 1.50955 1.53686 1.57169 1.72593 1.98241 2.58092 2.72597 3.31947 3.38263 3.42777 3.55831 3.65330 3.78911 3.81334 3.93272 4.16616 4.20438 4.25811 4.28793 4.35668 4.46903 4.52391 4.60436 4.61996 4.65843 4.71378 4.78514 4.82000 4.82512 4.87653 4.96075 4.99916 5.05238 5.07884 5.13671 5.26053 5.35233 5.37136 5.45765 5.53186 5.59208 5.73444 5.82274 6.29396 6.58778 7.06936 7.21050 7.35450 8.13872 8.34892 9.32526 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.002805 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.818787 B = 9979.871950 C =10339.101025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.119 0.881 4 C 0.095 3.905 5 N -0.618 5.618 6 C 0.585 3.415 7 O -0.595 6.595 8 C -0.344 4.344 9 C 0.215 3.785 10 N -0.457 5.457 11 C 0.040 3.960 12 C 0.172 3.828 13 C -0.302 4.302 14 C 0.379 3.621 15 O -0.582 6.582 16 C 0.125 3.875 17 C -0.067 4.067 18 C -0.123 4.123 19 C 0.169 3.831 20 N -0.747 5.747 21 C -0.239 4.239 22 H 0.083 0.917 23 C -0.083 4.083 24 N -0.976 5.976 25 Si 0.976 3.024 26 H -0.276 1.276 27 H -0.302 1.302 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.206 0.794 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.229 0.771 39 H 0.158 0.842 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.022 0.978 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.031 0.969 47 H 0.370 0.630 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 12.563 -34.968 37.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.137 0.863 4 C -0.026 4.026 5 N -0.351 5.351 6 C 0.377 3.623 7 O -0.476 6.476 8 C -0.355 4.355 9 C 0.081 3.919 10 N -0.139 5.139 11 C -0.099 4.099 12 C 0.046 3.954 13 C -0.325 4.325 14 C 0.273 3.727 15 O -0.472 6.472 16 C 0.002 3.998 17 C -0.069 4.069 18 C -0.180 4.180 19 C 0.043 3.957 20 N -0.389 5.389 21 C -0.370 4.370 22 H 0.101 0.899 23 C -0.274 4.274 24 N -0.627 5.627 25 Si 0.805 3.195 26 H -0.202 1.202 27 H -0.229 1.229 28 H -0.200 1.200 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.222 0.778 35 H 0.116 0.884 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.246 0.754 39 H 0.176 0.824 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.202 0.798 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.936 11.791 -34.479 37.293 hybrid contribution 0.596 -1.229 2.071 2.481 sum -7.340 10.562 -32.408 34.867 Atomic orbital electron populations 1.21877 0.93832 1.00906 1.03033 1.22241 0.96775 1.00191 0.91462 0.86276 1.23142 1.02735 0.79239 0.97443 1.48957 1.62859 1.06331 1.16951 1.17837 0.76304 0.81781 0.86419 1.90792 1.54599 1.33242 1.68987 1.21999 1.13609 1.05630 0.94217 1.22644 0.91987 0.94302 0.82993 1.43375 1.36050 1.25676 1.08823 1.23075 1.03481 0.89315 0.93988 1.22487 0.86416 0.85367 1.01086 1.22325 1.10416 1.05738 0.94014 1.19104 0.80450 0.83082 0.90058 1.90772 1.56690 1.37997 1.61748 1.22198 0.97217 0.97477 0.82959 1.21601 0.94899 0.94584 0.95776 1.21767 0.97440 1.00531 0.98310 1.20909 0.94005 0.92830 0.87951 1.42682 1.55904 1.10899 1.29459 1.19654 1.18763 0.95073 1.03547 0.89904 1.25635 1.03561 0.96498 1.01731 1.69862 1.50405 1.08804 1.33615 0.85176 0.79021 0.76918 0.78430 1.20166 1.22893 1.20044 0.92202 0.89648 0.94951 0.86978 0.87621 0.77763 0.88380 0.85559 0.86658 0.75438 0.82447 0.94971 0.90978 0.95891 0.91057 0.93524 0.94545 0.95087 0.79768 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 7.95 71.98 0.57 -2.08 16 2 C -0.09 -1.75 3.30 -9.74 -0.03 -1.79 16 3 H 0.12 1.77 7.71 -2.39 -0.02 1.75 16 4 C 0.10 1.58 4.79 86.68 0.42 1.99 16 5 N -0.62 -19.02 3.31 -811.17 -2.68 -21.70 16 6 C 0.58 22.43 7.51 86.62 0.65 23.08 16 7 O -0.60 -31.52 16.50 9.28 0.15 -31.37 16 8 C -0.34 -9.54 5.67 -18.63 -0.11 -9.65 16 9 C 0.22 2.39 8.18 84.25 0.69 3.08 16 10 N -0.46 -1.12 2.97 -547.47 -1.63 -2.75 16 11 C 0.04 -0.36 10.52 127.77 1.34 0.98 16 12 C 0.17 0.74 10.17 83.34 0.85 1.59 16 13 C -0.30 -5.40 10.01 22.34 0.22 -5.18 16 14 C 0.38 12.55 6.94 25.45 0.18 12.72 16 15 O -0.58 -27.71 16.92 7.78 0.13 -27.58 16 16 C 0.12 4.69 5.56 86.54 0.48 5.18 16 17 C -0.07 -2.18 0.73 -51.27 -0.04 -2.21 16 18 C -0.12 -4.51 7.08 71.98 0.51 -4.00 16 19 C 0.17 6.40 4.85 86.38 0.42 6.81 16 20 N -0.75 -38.52 5.12 -343.45 -1.76 -40.27 16 21 C -0.24 -13.40 9.99 84.03 0.84 -12.57 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 24 N -0.98 -63.22 13.06 21.65 0.28 -62.93 16 25 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 28 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 29 H 0.06 1.20 6.89 -2.39 -0.02 1.18 16 30 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.03 0.79 6.72 -2.39 -0.02 0.78 16 32 H 0.11 1.04 7.92 -2.39 -0.02 1.02 16 33 H 0.11 1.11 6.10 -2.39 -0.01 1.10 16 34 H 0.21 0.82 6.09 -2.91 -0.02 0.80 16 35 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.13 -1.77 7.96 -2.38 -0.02 -1.79 16 37 H 0.11 -1.38 7.96 -2.39 -0.02 -1.39 16 38 H 0.23 -1.78 7.98 -2.91 -0.02 -1.80 16 39 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.03 1.53 7.56 -2.39 -0.02 1.52 16 41 H 0.07 2.75 7.86 -2.38 -0.02 2.73 16 42 H 0.02 1.00 7.01 -2.39 -0.02 0.99 16 43 H 0.07 2.33 6.98 -2.38 -0.02 2.31 16 44 H 0.05 1.70 6.62 -2.39 -0.02 1.69 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.37 21.31 6.28 -92.70 -0.58 20.73 16 48 H 0.25 15.73 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -110.64 381.92 4.38 -106.26 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.39 Total: 17.47 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 7.46 Total: 13.54 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -5.79 Total: -127.66 kcal Atomic # 8 Polarization: -59.23 SS G_CDS: 0.28 Total: -58.95 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -110.64 4.38 -106.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182071065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.637 kcal (2) G-P(sol) polarization free energy of solvation -110.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds