Wall clock time and date at job start Tue Mar 31 2020 17:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.39735 * 2 1 4 4 C 1.54397 * 110.34270 * 237.76567 * 2 1 3 5 5 N 1.48141 * 104.62004 * 265.00109 * 4 2 1 6 6 C 1.34776 * 127.84122 * 140.39157 * 5 4 2 7 7 O 1.21277 * 120.00247 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.99757 * 0.02712 * 6 5 4 9 9 C 1.50700 * 109.47242 * 180.02562 * 8 6 5 10 10 C 1.38831 * 120.35497 * 269.72626 * 9 8 6 11 11 C 1.38373 * 118.48395 * 179.73485 * 10 9 8 12 12 C 1.38918 * 119.11505 * 0.53342 * 11 10 9 13 13 O 1.35676 * 119.68600 * 179.75082 * 12 11 10 14 14 N 1.32252 * 120.62548 * 359.72333 * 12 11 10 15 15 C 1.31959 * 121.65163 * 0.02562 * 14 12 11 16 16 C 1.48149 * 104.32271 * 320.41365 * 5 4 2 17 17 C 1.54289 * 110.34029 * 122.23477 * 2 1 3 18 18 C 1.52993 * 110.34162 * 359.97438 * 17 2 1 19 19 C 1.53005 * 110.34136 * 237.73637 * 17 2 1 20 20 N 1.46494 * 109.47187 * 179.97438 * 19 17 2 21 21 C 1.36935 * 119.99977 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99947 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.99818 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99952 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99677 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47189 * 60.00333 * 25 23 21 27 27 H 1.48504 * 109.46857 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47496 * 300.00129 * 25 23 21 29 29 H 1.08997 * 109.47875 * 180.77521 * 1 2 3 30 30 H 1.09002 * 109.47333 * 300.78186 * 1 2 3 31 31 H 1.09004 * 109.46717 * 60.77439 * 1 2 3 32 32 H 1.09002 * 110.40384 * 23.78838 * 4 2 1 33 33 H 1.08998 * 110.40848 * 146.09772 * 4 2 1 34 34 H 1.09006 * 109.46623 * 299.99515 * 8 6 5 35 35 H 1.08993 * 109.47311 * 59.99828 * 8 6 5 36 36 H 1.07998 * 120.75363 * 359.96924 * 10 9 8 37 37 H 1.08001 * 120.43940 * 180.27774 * 11 10 9 38 38 H 0.96703 * 113.99815 * 269.97231 * 13 12 11 39 39 H 1.07997 * 119.58351 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.40616 * 158.36877 * 16 5 4 41 41 H 1.08997 * 110.40974 * 280.68063 * 16 5 4 42 42 H 1.09004 * 109.47172 * 60.00434 * 18 17 2 43 43 H 1.08999 * 109.46964 * 180.02562 * 18 17 2 44 44 H 1.08996 * 109.47540 * 299.99979 * 18 17 2 45 45 H 1.08997 * 109.46835 * 300.00464 * 19 17 2 46 46 H 1.09006 * 109.46902 * 59.99899 * 19 17 2 47 47 H 0.97006 * 119.99794 * 0.02562 * 20 19 17 48 48 H 0.96996 * 119.99904 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0667 -0.7722 -1.2245 5 7 2.3138 -2.1439 -0.7227 6 6 2.0768 -3.3106 -1.3544 7 8 2.3350 -4.3608 -0.8056 8 6 1.4909 -3.3102 -2.7429 9 6 1.3255 -4.7305 -3.2188 10 6 2.3497 -5.3624 -3.9108 11 6 2.1585 -6.6688 -4.3249 12 6 0.9510 -7.2964 -4.0457 13 8 0.7492 -8.5755 -4.4508 14 7 -0.0033 -6.6592 -3.3883 15 6 0.1515 -5.4152 -2.9764 16 6 2.8800 -1.9423 0.6314 17 6 2.0663 -0.7716 1.2237 18 6 0.9061 -1.3031 2.0676 19 6 2.9692 0.1305 2.0674 20 7 3.4667 -0.6200 3.2230 21 6 4.2988 -0.0142 4.1262 22 1 4.5885 1.0168 3.9865 23 6 4.7706 -0.7255 5.2209 24 7 4.4179 -1.9821 5.3909 25 14 5.9062 0.1007 6.4526 26 1 5.2166 1.2699 7.0548 27 1 6.2647 -0.8661 7.5213 28 1 7.1394 0.5553 5.7615 29 1 -0.3635 -1.0275 0.0139 30 1 -0.3634 0.5259 0.8829 31 1 -0.3633 0.5018 -0.8969 32 1 1.3223 -0.7870 -2.0206 33 1 2.9938 -0.3231 -1.5806 34 1 0.5189 -2.8172 -2.7269 35 1 2.1584 -2.7756 -3.4187 36 1 3.2761 -4.8473 -4.1179 37 1 2.9360 -7.1920 -4.8617 38 1 0.3604 -8.6519 -5.3330 39 1 -0.6499 -4.9269 -2.4419 40 1 2.7492 -2.8401 1.2355 41 1 3.9358 -1.6793 0.5666 42 1 0.2952 -1.9743 1.4639 43 1 1.3004 -1.8447 2.9274 44 1 0.2959 -0.4685 2.4131 45 1 3.8111 0.4688 1.4635 46 1 2.3999 0.9935 2.4129 47 1 3.2068 -1.5461 3.3483 48 1 4.7473 -2.4791 6.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182138418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:05 Heat of formation + Delta-G solvation = -23.376637 kcal Electronic energy + Delta-G solvation = -28755.695149 eV Core-core repulsion = 24811.372301 eV Total energy + Delta-G solvation = -3944.322848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88835 -40.20669 -38.42149 -37.27624 -34.83030 -33.48898 -33.09806 -31.97271 -31.51351 -29.68342 -28.30685 -26.98958 -25.54005 -25.26680 -24.00372 -23.31545 -22.50711 -21.19748 -19.35195 -19.10017 -18.50848 -17.39080 -17.23731 -16.79320 -16.33687 -16.00383 -15.67392 -14.98468 -14.69327 -14.53434 -14.37158 -14.10504 -14.01184 -13.49744 -13.49024 -13.19683 -13.07051 -12.91798 -12.75170 -12.51488 -12.21268 -12.09781 -12.01826 -11.86652 -11.52882 -11.28818 -11.26431 -10.99558 -10.79666 -10.45179 -10.34192 -10.22777 -10.15883 -9.91826 -9.84288 -9.67153 -9.60728 -9.01354 -8.87080 -8.60985 -6.91678 -5.75091 -3.04219 0.69578 0.98338 2.63175 2.93375 3.26939 3.44464 3.48801 3.50318 3.55008 4.27745 4.40985 4.43505 4.55006 4.58952 4.61058 4.68217 4.84001 4.88146 4.98735 5.10998 5.22201 5.30965 5.39341 5.43006 5.43384 5.48128 5.55800 5.62198 5.67382 5.78361 5.88454 5.91825 5.96939 6.04866 6.09177 6.15980 6.21127 6.23377 6.25774 6.43029 6.57811 6.67558 6.76809 6.86592 7.19564 7.61631 7.66413 7.69812 8.18509 8.43376 9.54535 10.11969 10.46169 11.47466 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.002467 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.145140 B =11348.615960 C =12327.486601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.620 5.620 6 C 0.530 3.470 7 O -0.532 6.532 8 C -0.092 4.092 9 C -0.124 4.124 10 C -0.046 4.046 11 C -0.183 4.183 12 C 0.305 3.695 13 O -0.483 6.483 14 N -0.502 5.502 15 C 0.140 3.860 16 C 0.120 3.880 17 C -0.074 4.074 18 C -0.132 4.132 19 C 0.168 3.832 20 N -0.731 5.731 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.398 0.602 39 H 0.158 0.842 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.020 0.980 46 H 0.022 0.978 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 -0.578 -24.986 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.355 5.355 6 C 0.318 3.682 7 O -0.408 6.408 8 C -0.132 4.132 9 C -0.127 4.127 10 C -0.072 4.072 11 C -0.204 4.204 12 C 0.127 3.873 13 O -0.289 6.289 14 N -0.220 5.220 15 C -0.017 4.017 16 C -0.002 4.002 17 C -0.075 4.075 18 C -0.189 4.189 19 C 0.040 3.960 20 N -0.376 5.376 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.255 0.745 39 H 0.176 0.824 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.040 0.960 47 H 0.220 0.780 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.826 -1.802 -23.973 25.971 hybrid contribution 1.254 0.683 0.251 1.450 sum -8.572 -1.119 -23.722 25.248 Atomic orbital electron populations 1.21915 0.94526 1.01991 1.01506 1.22144 0.96261 0.99548 0.93840 0.89366 1.22521 1.00534 0.81996 0.96926 1.49032 1.63003 1.05157 1.18273 1.19988 0.78679 0.82391 0.87093 1.90777 1.52229 1.30340 1.67459 1.20540 1.03741 0.94246 0.94721 1.20318 0.95584 0.96804 0.99984 1.21363 0.98054 0.93830 0.93907 1.22053 0.98973 0.95443 1.03944 1.19194 0.89655 0.84487 0.93980 1.84811 1.84474 1.20695 1.38955 1.67159 1.33614 1.09494 1.11695 1.22334 0.96260 0.88450 0.94703 1.22482 0.97174 0.99015 0.81529 1.21698 0.96234 0.95113 0.94499 1.21860 0.96831 1.00624 0.99597 1.20708 0.93618 0.92985 0.88687 1.42401 1.57328 1.12969 1.24863 1.19152 1.20576 0.95735 1.01812 0.91298 1.24742 1.01080 0.96076 0.98973 1.69645 1.48866 1.08440 1.31042 0.86280 0.80727 0.78153 0.81071 1.21318 1.21724 1.21319 0.92338 0.91893 0.93169 0.90509 0.90877 0.87601 0.87754 0.84376 0.84143 0.74486 0.82445 0.89716 0.90487 0.93405 0.91451 0.92459 0.96253 0.95997 0.78028 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 7.92 37.16 0.29 -1.04 16 2 C -0.10 -1.06 3.31 -89.22 -0.30 -1.35 16 3 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 4 C 0.10 0.96 6.46 -2.41 -0.02 0.94 16 5 N -0.62 -7.93 3.32 -169.31 -0.56 -8.49 16 6 C 0.53 7.09 7.91 -10.99 -0.09 7.00 16 7 O -0.53 -9.77 16.30 5.56 0.09 -9.68 16 8 C -0.09 -0.77 4.83 -29.03 -0.14 -0.91 16 9 C -0.12 -1.26 4.39 -104.47 -0.46 -1.72 16 10 C -0.05 -0.43 9.85 -39.31 -0.39 -0.82 16 11 C -0.18 -1.76 10.04 -39.28 -0.39 -2.15 16 12 C 0.31 3.47 7.75 -17.12 -0.13 3.34 16 13 O -0.48 -4.70 13.56 -18.73 -0.25 -4.95 16 14 N -0.50 -6.40 10.39 -13.33 -0.14 -6.54 16 15 C 0.14 1.56 10.85 -17.57 -0.19 1.36 16 16 C 0.12 1.93 5.71 -2.41 -0.01 1.92 16 17 C -0.07 -1.11 0.73 -153.11 -0.11 -1.22 16 18 C -0.13 -2.06 7.09 37.15 0.26 -1.80 16 19 C 0.17 3.16 4.87 -4.04 -0.02 3.14 16 20 N -0.73 -17.88 5.12 -59.91 -0.31 -18.19 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 25 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.06 0.59 6.61 -51.93 -0.34 0.24 16 30 H 0.06 0.63 6.98 -51.93 -0.36 0.27 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.49 7.02 -51.93 -0.36 0.13 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.63 7.90 -51.93 -0.41 0.22 16 35 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.40 1.61 9.06 45.56 0.41 2.02 16 39 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.08 1.63 7.60 -51.93 -0.39 1.23 16 41 H 0.08 1.34 7.83 -51.93 -0.41 0.93 16 42 H 0.05 0.69 6.72 -51.93 -0.35 0.34 16 43 H 0.07 1.27 6.74 -51.93 -0.35 0.92 16 44 H 0.06 0.84 6.89 -51.93 -0.36 0.48 16 45 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.39 10.04 6.18 -40.82 -0.25 9.78 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -36.51 388.01 -8.06 -44.57 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.50 Total: 8.18 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.94 Total: -0.56 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.28 Total: -60.79 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.16 Total: -14.63 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.51 -8.06 -44.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182138418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.192 kcal (2) G-P(sol) polarization free energy of solvation -36.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds