Wall clock time and date at job start Tue Mar 31 2020 17:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.39735 * 2 1 4 4 C 1.54397 * 110.34270 * 237.76567 * 2 1 3 5 5 N 1.48141 * 104.62004 * 265.00109 * 4 2 1 6 6 C 1.34776 * 127.84122 * 140.39157 * 5 4 2 7 7 O 1.21277 * 120.00247 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.99757 * 0.02712 * 6 5 4 9 9 C 1.50700 * 109.47242 * 180.02562 * 8 6 5 10 10 C 1.38831 * 120.35497 * 269.72626 * 9 8 6 11 11 C 1.38373 * 118.48395 * 179.73485 * 10 9 8 12 12 C 1.38918 * 119.11505 * 0.53342 * 11 10 9 13 13 O 1.35676 * 119.68600 * 179.75082 * 12 11 10 14 14 N 1.32252 * 120.62548 * 359.72333 * 12 11 10 15 15 C 1.31959 * 121.65163 * 0.02562 * 14 12 11 16 16 C 1.48149 * 104.32271 * 320.41365 * 5 4 2 17 17 C 1.54289 * 110.34029 * 122.23477 * 2 1 3 18 18 C 1.52993 * 110.34162 * 359.97438 * 17 2 1 19 19 C 1.53005 * 110.34136 * 237.73637 * 17 2 1 20 20 N 1.46494 * 109.47187 * 179.97438 * 19 17 2 21 21 C 1.36935 * 119.99977 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99947 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.99818 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99952 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99677 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47189 * 60.00333 * 25 23 21 27 27 H 1.48504 * 109.46857 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47496 * 300.00129 * 25 23 21 29 29 H 1.08997 * 109.47875 * 180.77521 * 1 2 3 30 30 H 1.09002 * 109.47333 * 300.78186 * 1 2 3 31 31 H 1.09004 * 109.46717 * 60.77439 * 1 2 3 32 32 H 1.09002 * 110.40384 * 23.78838 * 4 2 1 33 33 H 1.08998 * 110.40848 * 146.09772 * 4 2 1 34 34 H 1.09006 * 109.46623 * 299.99515 * 8 6 5 35 35 H 1.08993 * 109.47311 * 59.99828 * 8 6 5 36 36 H 1.07998 * 120.75363 * 359.96924 * 10 9 8 37 37 H 1.08001 * 120.43940 * 180.27774 * 11 10 9 38 38 H 0.96703 * 113.99815 * 269.97231 * 13 12 11 39 39 H 1.07997 * 119.58351 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.40616 * 158.36877 * 16 5 4 41 41 H 1.08997 * 110.40974 * 280.68063 * 16 5 4 42 42 H 1.09004 * 109.47172 * 60.00434 * 18 17 2 43 43 H 1.08999 * 109.46964 * 180.02562 * 18 17 2 44 44 H 1.08996 * 109.47540 * 299.99979 * 18 17 2 45 45 H 1.08997 * 109.46835 * 300.00464 * 19 17 2 46 46 H 1.09006 * 109.46902 * 59.99899 * 19 17 2 47 47 H 0.97006 * 119.99794 * 0.02562 * 20 19 17 48 48 H 0.96996 * 119.99904 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0667 -0.7722 -1.2245 5 7 2.3138 -2.1439 -0.7227 6 6 2.0768 -3.3106 -1.3544 7 8 2.3350 -4.3608 -0.8056 8 6 1.4909 -3.3102 -2.7429 9 6 1.3255 -4.7305 -3.2188 10 6 2.3497 -5.3624 -3.9108 11 6 2.1585 -6.6688 -4.3249 12 6 0.9510 -7.2964 -4.0457 13 8 0.7492 -8.5755 -4.4508 14 7 -0.0033 -6.6592 -3.3883 15 6 0.1515 -5.4152 -2.9764 16 6 2.8800 -1.9423 0.6314 17 6 2.0663 -0.7716 1.2237 18 6 0.9061 -1.3031 2.0676 19 6 2.9692 0.1305 2.0674 20 7 3.4667 -0.6200 3.2230 21 6 4.2988 -0.0142 4.1262 22 1 4.5885 1.0168 3.9865 23 6 4.7706 -0.7255 5.2209 24 7 4.4179 -1.9821 5.3909 25 14 5.9062 0.1007 6.4526 26 1 5.2166 1.2699 7.0548 27 1 6.2647 -0.8661 7.5213 28 1 7.1394 0.5553 5.7615 29 1 -0.3635 -1.0275 0.0139 30 1 -0.3634 0.5259 0.8829 31 1 -0.3633 0.5018 -0.8969 32 1 1.3223 -0.7870 -2.0206 33 1 2.9938 -0.3231 -1.5806 34 1 0.5189 -2.8172 -2.7269 35 1 2.1584 -2.7756 -3.4187 36 1 3.2761 -4.8473 -4.1179 37 1 2.9360 -7.1920 -4.8617 38 1 0.3604 -8.6519 -5.3330 39 1 -0.6499 -4.9269 -2.4419 40 1 2.7492 -2.8401 1.2355 41 1 3.9358 -1.6793 0.5666 42 1 0.2952 -1.9743 1.4639 43 1 1.3004 -1.8447 2.9274 44 1 0.2959 -0.4685 2.4131 45 1 3.8111 0.4688 1.4635 46 1 2.3999 0.9935 2.4129 47 1 3.2068 -1.5461 3.3483 48 1 4.7473 -2.4791 6.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182138418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:04 Heat of formation + Delta-G solvation = -52.372601 kcal Electronic energy + Delta-G solvation = -28756.952508 eV Core-core repulsion = 24811.372301 eV Total energy + Delta-G solvation = -3945.580207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.73249 -41.18146 -39.50278 -38.05544 -36.47833 -34.61074 -34.15626 -33.03346 -32.70547 -31.20292 -29.24337 -28.14872 -26.71413 -26.55186 -24.99388 -24.73951 -23.38312 -22.37666 -20.35982 -19.82219 -19.80821 -19.01316 -18.04059 -17.96227 -17.16982 -17.10303 -16.55288 -16.47027 -15.88956 -15.65054 -15.45217 -15.29780 -15.20173 -14.76350 -14.66974 -14.32355 -14.18940 -13.91191 -13.78392 -13.45573 -13.38655 -13.07388 -13.02811 -12.81783 -12.74686 -12.61943 -12.54378 -12.42330 -12.37323 -12.11561 -11.93958 -11.44890 -11.34736 -11.18106 -11.04873 -10.91445 -10.78163 -10.44826 -9.77065 -9.68858 -8.97231 -7.93525 -5.21947 -0.04778 0.25155 1.46235 1.49522 1.55664 1.64789 1.97271 2.56529 2.59072 2.78882 3.39199 3.44813 3.59450 3.63148 3.73757 3.83927 3.91657 3.94741 4.02510 4.22478 4.31385 4.32410 4.34545 4.39042 4.53645 4.59580 4.66089 4.74048 4.75865 4.77908 4.83194 4.87802 4.96240 4.97744 5.05575 5.10274 5.12998 5.16486 5.22011 5.30906 5.43164 5.48367 5.52764 5.57851 5.65377 6.28024 6.62490 6.64954 6.92546 7.18216 7.34382 8.12701 8.33686 9.30031 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.002467 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.145140 B =11348.615960 C =12327.486601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.103 0.897 4 C 0.103 3.897 5 N -0.617 5.617 6 C 0.525 3.475 7 O -0.594 6.594 8 C -0.077 4.077 9 C -0.132 4.132 10 C -0.051 4.051 11 C -0.186 4.186 12 C 0.288 3.712 13 O -0.496 6.496 14 N -0.536 5.536 15 C 0.123 3.877 16 C 0.124 3.876 17 C -0.067 4.067 18 C -0.123 4.123 19 C 0.166 3.834 20 N -0.745 5.745 21 C -0.240 4.240 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.973 3.027 26 H -0.276 1.276 27 H -0.300 1.300 28 H -0.277 1.277 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.419 0.581 39 H 0.170 0.830 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.022 0.978 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.372 0.628 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 2.204 -27.989 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.121 0.879 4 C -0.018 4.018 5 N -0.350 5.350 6 C 0.316 3.684 7 O -0.475 6.475 8 C -0.117 4.117 9 C -0.134 4.134 10 C -0.076 4.076 11 C -0.207 4.207 12 C 0.110 3.890 13 O -0.306 6.306 14 N -0.255 5.255 15 C -0.034 4.034 16 C 0.001 3.999 17 C -0.068 4.068 18 C -0.180 4.180 19 C 0.039 3.961 20 N -0.388 5.388 21 C -0.372 4.372 22 H 0.097 0.903 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.802 3.198 26 H -0.202 1.202 27 H -0.227 1.227 28 H -0.203 1.203 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.279 0.721 39 H 0.187 0.813 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.046 0.954 47 H 0.205 0.795 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.302 1.059 -27.051 28.965 hybrid contribution 1.373 -0.188 1.131 1.789 sum -8.929 0.870 -25.920 27.428 Atomic orbital electron populations 1.21896 0.93017 1.01870 1.02861 1.22171 0.97431 0.99730 0.91763 0.87858 1.22830 1.02695 0.79173 0.97102 1.49094 1.62214 1.06943 1.16710 1.20981 0.77564 0.81340 0.88559 1.90759 1.54841 1.32628 1.69269 1.20606 1.05898 0.93878 0.91326 1.20534 0.95269 0.97807 0.99822 1.21759 0.98739 0.93890 0.93247 1.22311 0.98768 0.95789 1.03816 1.19489 0.90255 0.84901 0.94336 1.84752 1.84829 1.20280 1.40739 1.67127 1.34899 1.10570 1.12939 1.22663 0.97441 0.88318 0.94956 1.22123 0.96747 0.97502 0.83536 1.21576 0.94980 0.94556 0.95690 1.21764 0.97229 1.00689 0.98305 1.20915 0.94400 0.93325 0.87440 1.42658 1.57118 1.12820 1.26176 1.19627 1.19698 0.96060 1.01829 0.90291 1.25591 1.03464 0.96754 1.01382 1.69834 1.50847 1.10119 1.31623 0.85209 0.79020 0.77078 0.78449 1.20190 1.22654 1.20298 0.93103 0.92791 0.89726 0.85977 0.89263 0.84161 0.84030 0.81993 0.82018 0.72051 0.81285 0.94261 0.92338 0.92236 0.95882 0.91390 0.95534 0.95387 0.79523 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 7.92 71.98 0.57 -1.46 16 2 C -0.09 -1.64 3.31 -9.88 -0.03 -1.67 16 3 H 0.10 1.62 7.71 -2.39 -0.02 1.60 16 4 C 0.10 1.43 6.46 86.54 0.56 1.99 16 5 N -0.62 -14.65 3.32 -807.95 -2.68 -17.32 16 6 C 0.52 13.20 7.91 87.66 0.69 13.89 16 7 O -0.59 -22.37 16.30 -3.02 -0.05 -22.42 16 8 C -0.08 -1.00 4.83 29.10 0.14 -0.86 16 9 C -0.13 -2.40 4.39 -19.77 -0.09 -2.48 16 10 C -0.05 -0.86 9.85 22.44 0.22 -0.64 16 11 C -0.19 -3.35 10.04 22.46 0.23 -3.13 16 12 C 0.29 6.49 7.75 84.79 0.66 7.15 16 13 O -0.50 -9.57 13.56 -89.94 -1.22 -10.79 16 14 N -0.54 -13.73 10.39 -308.95 -3.21 -16.93 16 15 C 0.12 2.64 10.85 84.63 0.92 3.56 16 16 C 0.12 4.13 5.71 86.53 0.49 4.62 16 17 C -0.07 -1.96 0.73 -51.27 -0.04 -2.00 16 18 C -0.12 -3.91 7.09 71.98 0.51 -3.40 16 19 C 0.17 6.18 4.87 86.38 0.42 6.60 16 20 N -0.74 -37.57 5.12 -343.45 -1.76 -39.33 16 21 C -0.24 -13.39 9.99 84.04 0.84 -12.55 16 22 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.97 -61.53 13.06 21.65 0.28 -61.25 16 25 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 28 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 29 H 0.05 0.84 6.61 -2.39 -0.02 0.82 16 30 H 0.05 0.90 6.98 -2.39 -0.02 0.89 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.12 0.68 7.02 -2.39 -0.02 0.67 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.14 0.89 7.90 -2.38 -0.02 0.87 16 35 H 0.14 0.83 8.09 -2.39 -0.02 0.81 16 36 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.42 3.23 9.06 -74.06 -0.67 2.55 16 39 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 40 H 0.04 1.64 7.60 -2.39 -0.02 1.62 16 41 H 0.06 2.12 7.83 -2.39 -0.02 2.10 16 42 H 0.06 1.72 6.72 -2.39 -0.02 1.71 16 43 H 0.02 0.91 6.74 -2.39 -0.02 0.90 16 44 H 0.07 1.98 6.89 -2.39 -0.02 1.96 16 45 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 46 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.37 20.60 6.18 -92.70 -0.57 20.02 16 48 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -85.78 388.01 -0.30 -86.08 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.26 Total: 27.72 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.56 Total: 5.42 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -7.36 Total: -134.83 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.27 Total: -33.22 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -85.78 -0.30 -86.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182138418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.710 kcal (2) G-P(sol) polarization free energy of solvation -85.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds