Wall clock time and date at job start Tue Mar 31 2020 17:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.30536 * 2 1 4 4 C 1.54386 * 110.34198 * 237.70620 * 2 1 3 5 5 N 1.48148 * 104.62094 * 264.99678 * 4 2 1 6 6 C 1.34777 * 127.83893 * 140.41869 * 5 4 2 7 7 O 1.21602 * 119.99950 * 175.73484 * 6 5 4 8 8 C 1.47403 * 119.99902 * 355.72366 * 6 5 4 9 9 C 1.37362 * 128.56051 * 33.94103 * 8 6 5 10 10 O 1.33495 * 106.34205 * 179.97438 * 9 8 6 11 11 N 1.20661 * 113.15005 * 359.97438 * 10 9 8 12 12 C 1.30009 * 112.30517 * 359.72982 * 11 10 9 13 13 C 1.50705 * 127.33573 * 180.27299 * 12 11 10 14 14 C 1.53001 * 117.49910 * 8.89909 * 13 12 11 15 15 C 1.52999 * 117.50027 * 300.24218 * 13 12 11 16 16 C 1.48147 * 104.32321 * 320.41449 * 5 4 2 17 17 C 1.54285 * 110.34300 * 122.17435 * 2 1 3 18 18 C 1.52999 * 110.34564 * 359.89157 * 17 2 1 19 19 C 1.53007 * 110.34322 * 237.74359 * 17 2 1 20 20 N 1.46494 * 109.47076 * 180.02562 * 19 17 2 21 21 C 1.36945 * 119.99781 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99654 * 359.72006 * 21 20 19 23 23 C 1.38811 * 119.99724 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00470 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99476 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46941 * 90.00259 * 25 23 21 27 27 H 1.48502 * 109.46904 * 210.00137 * 25 23 21 28 28 H 1.48500 * 109.47347 * 330.00401 * 25 23 21 29 29 H 1.08999 * 109.47091 * 297.82805 * 1 2 3 30 30 H 1.08994 * 109.46687 * 57.82901 * 1 2 3 31 31 H 1.08997 * 109.46597 * 177.82842 * 1 2 3 32 32 H 1.09000 * 110.40793 * 23.78649 * 4 2 1 33 33 H 1.09005 * 110.40459 * 146.21237 * 4 2 1 34 34 H 1.08000 * 126.83590 * 359.94890 * 9 8 6 35 35 H 1.08996 * 115.54652 * 154.57400 * 13 12 11 36 36 H 1.09004 * 117.49734 * 0.02562 * 14 13 12 37 37 H 1.08995 * 117.49761 * 145.01933 * 14 13 12 38 38 H 1.09003 * 117.50007 * 214.98200 * 15 13 12 39 39 H 1.09004 * 117.49481 * 359.97050 * 15 13 12 40 40 H 1.08997 * 110.40527 * 280.80556 * 16 5 4 41 41 H 1.08992 * 110.40633 * 158.36915 * 16 5 4 42 42 H 1.08999 * 109.47131 * 298.52899 * 18 17 2 43 43 H 1.08999 * 109.46848 * 58.52383 * 18 17 2 44 44 H 1.08997 * 109.47732 * 178.53038 * 18 17 2 45 45 H 1.08997 * 109.46850 * 59.99521 * 19 17 2 46 46 H 1.09007 * 109.46770 * 299.99789 * 19 17 2 47 47 H 0.96995 * 120.00476 * 359.97438 * 20 19 17 48 48 H 0.97000 * 119.99900 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7734 -1.2237 5 7 2.3140 -2.1446 -0.7204 6 6 2.0774 -3.3120 -1.3511 7 8 2.4079 -4.3611 -0.8326 8 6 1.4179 -3.3170 -2.6694 9 6 1.5205 -2.3942 -3.6816 10 8 0.7398 -2.8338 -4.6712 11 7 0.1861 -3.8741 -4.4122 12 6 0.4932 -4.3151 -3.2283 13 6 0.0031 -5.5779 -2.5678 14 6 -0.7954 -6.5604 -3.4270 15 6 -1.5052 -5.7259 -2.3581 16 6 2.8802 -1.9416 0.6335 17 6 2.0664 -0.7703 1.2245 18 6 0.9063 -1.2992 2.0702 19 6 2.9692 0.1328 2.0673 20 7 3.4678 -0.6169 3.2230 21 6 4.3008 -0.0104 4.1250 22 1 4.5937 1.0192 3.9819 23 6 4.7727 -0.7207 5.2203 24 7 4.4201 -1.9771 5.3917 25 14 5.9096 0.1065 6.4503 26 1 5.1013 0.7400 7.5230 27 1 6.8156 -0.9078 7.0467 28 1 6.7154 1.1448 5.7591 29 1 -0.3633 0.4797 0.9088 30 1 -0.3632 0.5472 -0.8699 31 1 -0.3632 -1.0269 -0.0389 32 1 1.3224 -0.7891 -2.0197 33 1 2.9950 -0.3258 -1.5789 34 1 2.1143 -1.4921 -3.6776 35 1 0.6606 -5.9952 -1.8053 36 1 -0.9658 -6.2936 -4.4700 37 1 -0.6633 -7.6242 -3.2293 38 1 -1.8400 -6.2409 -1.4576 39 1 -2.1430 -4.9096 -2.6973 40 1 3.9354 -1.6764 0.5682 41 1 2.7495 -2.8387 1.2385 42 1 0.3124 -0.4618 2.4365 43 1 0.2794 -1.9500 1.4606 44 1 1.3004 -1.8625 2.9160 45 1 2.3998 0.9960 2.4118 46 1 3.8113 0.4705 1.4631 47 1 3.2079 -1.5429 3.3493 48 1 4.7497 -2.4732 6.1573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182587834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:00 Heat of formation + Delta-G solvation = 51.148360 kcal Electronic energy + Delta-G solvation = -29475.595349 eV Core-core repulsion = 25534.504148 eV Total energy + Delta-G solvation = -3941.091202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -46.01740 -41.49142 -39.50453 -38.45831 -36.52432 -34.84664 -34.11034 -33.06761 -32.95573 -31.17860 -28.80508 -27.57069 -26.69915 -25.70345 -25.37819 -24.52284 -23.39735 -22.48680 -21.29896 -21.02009 -19.88796 -19.29292 -18.80463 -18.43576 -17.82058 -17.20643 -16.94807 -16.57906 -16.42196 -15.71214 -15.60779 -15.34551 -15.33191 -14.77277 -14.73404 -14.62634 -14.24060 -13.86204 -13.50671 -13.27464 -13.10006 -13.03562 -12.87527 -12.77632 -12.61890 -12.58531 -12.47358 -12.42046 -12.36711 -12.07899 -11.95076 -11.54014 -11.50016 -11.40579 -11.25395 -11.21146 -10.90688 -10.78504 -10.58902 -9.81838 -8.95031 -7.91865 -5.19905 0.09502 0.61308 1.48245 1.49636 1.53297 1.57996 1.90056 2.19387 2.57944 2.73172 2.88036 3.17553 3.38298 3.43113 3.53804 3.73578 3.79295 3.82495 3.88101 3.98098 3.99571 4.19156 4.25082 4.28535 4.34927 4.50788 4.55153 4.61194 4.62640 4.64588 4.73090 4.77138 4.83635 4.87345 4.89075 5.02321 5.03672 5.04515 5.08434 5.10974 5.15237 5.26786 5.38993 5.44592 5.53591 5.59411 6.29972 6.43303 6.94825 7.15046 7.36688 8.14650 8.35408 9.31807 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002771 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.004077 B =10101.592081 C =10660.982172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.113 0.887 4 C 0.091 3.909 5 N -0.607 5.607 6 C 0.610 3.390 7 O -0.580 6.580 8 C -0.265 4.265 9 C 0.026 3.974 10 O 0.107 5.893 11 N -0.369 5.369 12 C 0.085 3.915 13 C -0.118 4.118 14 C -0.148 4.148 15 C -0.150 4.150 16 C 0.127 3.873 17 C -0.066 4.066 18 C -0.123 4.123 19 C 0.167 3.833 20 N -0.745 5.745 21 C -0.238 4.238 22 H 0.080 0.920 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.288 1.288 27 H -0.301 1.301 28 H -0.267 1.267 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.274 0.726 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.026 0.974 45 H 0.030 0.970 46 H 0.031 0.969 47 H 0.373 0.627 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 2.997 -23.221 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.131 0.869 4 C -0.030 4.030 5 N -0.339 5.339 6 C 0.400 3.600 7 O -0.461 6.461 8 C -0.272 4.272 9 C -0.055 4.055 10 O 0.047 5.953 11 N -0.075 5.075 12 C -0.076 4.076 13 C -0.137 4.137 14 C -0.186 4.186 15 C -0.188 4.188 16 C 0.005 3.995 17 C -0.068 4.068 18 C -0.181 4.181 19 C 0.041 3.959 20 N -0.388 5.388 21 C -0.370 4.370 22 H 0.098 0.902 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.216 1.216 27 H -0.228 1.228 28 H -0.192 1.192 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.290 0.710 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.048 0.952 46 H 0.049 0.951 47 H 0.205 0.795 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.332 2.095 -23.964 27.032 hybrid contribution 1.377 -0.397 2.304 2.713 sum -10.955 1.699 -21.660 24.332 Atomic orbital electron populations 1.21893 0.93487 1.01413 1.02911 1.22150 0.97064 1.00063 0.91516 0.86928 1.23091 1.03027 0.79232 0.97632 1.48810 1.61593 1.06236 1.17253 1.16716 0.77752 0.82155 0.83394 1.90801 1.54402 1.32612 1.68249 1.21961 1.07915 0.99370 0.97975 1.27218 0.93722 0.99565 0.85021 1.84562 1.44415 1.28175 1.38198 1.73594 1.18318 0.99019 1.16539 1.23956 0.96299 0.97204 0.90187 1.20365 0.96362 0.93257 1.03693 1.23098 1.00924 0.97585 0.96957 1.23118 0.90942 1.02960 1.01781 1.22245 0.97184 0.97955 0.82160 1.21587 0.95069 0.94496 0.95601 1.21767 0.97190 1.00727 0.98374 1.20909 0.94418 0.93203 0.87410 1.42654 1.57043 1.12862 1.26215 1.19651 1.19469 0.96130 1.01728 0.90247 1.25549 1.03440 0.96731 1.01341 1.69830 1.50907 1.10084 1.31489 0.85172 0.78433 0.77145 0.79208 1.21554 1.22764 1.19155 0.92247 0.90108 0.93933 0.87286 0.87478 0.71029 0.86639 0.88059 0.86309 0.86601 0.88378 0.91236 0.93526 0.91349 0.92635 0.95446 0.95176 0.95118 0.79458 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.92 71.98 0.57 -1.68 16 2 C -0.09 -1.59 3.31 -9.89 -0.03 -1.62 16 3 H 0.11 1.64 7.71 -2.39 -0.02 1.62 16 4 C 0.09 1.34 5.61 86.53 0.49 1.82 16 5 N -0.61 -15.43 3.32 -811.86 -2.69 -18.13 16 6 C 0.61 18.10 7.88 86.66 0.68 18.78 16 7 O -0.58 -23.04 16.77 -4.04 -0.07 -23.11 16 8 C -0.26 -5.99 6.04 -18.74 -0.11 -6.10 16 9 C 0.03 0.34 10.42 67.61 0.70 1.05 16 10 O 0.11 1.76 11.06 76.96 0.85 2.61 16 11 N -0.37 -8.04 11.71 -44.78 -0.52 -8.57 16 12 C 0.08 2.05 7.08 45.16 0.32 2.37 16 13 C -0.12 -2.78 6.26 -11.54 -0.07 -2.85 16 14 C -0.15 -2.65 10.17 30.62 0.31 -2.34 16 15 C -0.15 -2.76 10.24 30.62 0.31 -2.45 16 16 C 0.13 4.14 5.70 86.53 0.49 4.63 16 17 C -0.07 -1.90 0.73 -51.27 -0.04 -1.94 16 18 C -0.12 -3.88 7.07 71.98 0.51 -3.37 16 19 C 0.17 5.97 4.87 86.38 0.42 6.39 16 20 N -0.74 -36.45 5.13 -343.44 -1.76 -38.21 16 21 C -0.24 -12.95 9.99 84.03 0.84 -12.11 16 22 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 24 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 25 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 27 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 H 0.06 1.04 6.84 -2.39 -0.02 1.02 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.82 6.76 -2.39 -0.02 0.80 16 32 H 0.11 0.95 5.42 -2.39 -0.01 0.94 16 33 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.27 0.59 6.87 -2.91 -0.02 0.57 16 35 H 0.12 3.23 7.56 -2.39 -0.02 3.21 16 36 H 0.10 1.81 7.97 -2.38 -0.02 1.79 16 37 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.07 2.39 7.83 -2.39 -0.02 2.38 16 41 H 0.05 1.88 7.64 -2.39 -0.02 1.86 16 42 H 0.07 1.97 6.89 -2.39 -0.02 1.95 16 43 H 0.05 1.63 6.71 -2.39 -0.02 1.61 16 44 H 0.03 1.06 6.78 -2.39 -0.02 1.05 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.03 1.06 8.10 -2.38 -0.02 1.04 16 47 H 0.37 20.02 6.19 -92.71 -0.57 19.44 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -77.07 384.96 4.39 -72.69 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.41 Total: 28.08 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.86 Total: -3.45 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -4.70 Total: -124.95 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.78 Total: -20.50 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.07 4.39 -72.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182587834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.834 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds