Wall clock time and date at job start Tue Mar 31 2020 17:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.30198 * 2 1 4 4 C 1.54386 * 110.43319 * 237.76596 * 2 1 3 5 5 N 1.48146 * 104.61890 * 264.94845 * 4 2 1 6 6 C 1.34775 * 127.84246 * 140.39015 * 5 4 2 7 7 O 1.21578 * 119.99970 * 179.97438 * 6 5 4 8 8 C 1.47509 * 119.99414 * 359.97438 * 6 5 4 9 9 C 1.36827 * 126.94195 * 179.70874 * 8 6 5 10 10 C 1.41255 * 103.84929 * 179.97438 * 9 8 6 11 11 C 1.50704 * 126.70855 * 180.14265 * 10 9 8 12 12 C 1.53009 * 117.49513 * 343.87875 * 11 10 9 13 13 C 1.53003 * 59.99884 * 252.51519 * 12 11 10 14 14 N 1.30129 * 106.59108 * 0.33509 * 10 9 8 15 15 O 1.20886 * 111.98020 * 359.78251 * 14 10 9 16 16 C 1.48152 * 104.32191 * 320.41410 * 5 4 2 17 17 C 1.54286 * 110.34500 * 122.17143 * 2 1 3 18 18 C 1.52994 * 110.34237 * 0.02562 * 17 2 1 19 19 C 1.53000 * 110.34248 * 237.84671 * 17 2 1 20 20 N 1.46499 * 109.46840 * 179.97438 * 19 17 2 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47203 * 89.99650 * 25 23 21 27 27 H 1.48501 * 109.47104 * 209.99764 * 25 23 21 28 28 H 1.48504 * 109.46767 * 329.99904 * 25 23 21 29 29 H 1.09004 * 109.47334 * 297.82410 * 1 2 3 30 30 H 1.08998 * 109.47600 * 57.82764 * 1 2 3 31 31 H 1.09001 * 109.47098 * 177.82643 * 1 2 3 32 32 H 1.09000 * 110.40846 * 23.73133 * 4 2 1 33 33 H 1.08997 * 110.40872 * 146.16117 * 4 2 1 34 34 H 1.08003 * 128.07340 * 0.02843 * 9 8 6 35 35 H 1.08998 * 115.55557 * 129.58842 * 11 10 9 36 36 H 1.08996 * 117.49788 * 0.02562 * 12 11 10 37 37 H 1.09002 * 117.49417 * 145.02065 * 12 11 10 38 38 H 1.09000 * 117.49405 * 252.51575 * 13 12 11 39 39 H 1.09000 * 117.50164 * 107.49253 * 13 12 11 40 40 H 1.09001 * 110.40521 * 280.80462 * 16 5 4 41 41 H 1.08994 * 110.41051 * 158.36695 * 16 5 4 42 42 H 1.08996 * 109.47469 * 298.52526 * 18 17 2 43 43 H 1.09004 * 109.47256 * 58.52617 * 18 17 2 44 44 H 1.09003 * 109.47302 * 178.52245 * 18 17 2 45 45 H 1.09002 * 109.47398 * 300.00305 * 19 17 2 46 46 H 1.09001 * 109.47194 * 60.00486 * 19 17 2 47 47 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 48 48 H 0.96996 * 120.00586 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2237 5 7 2.3178 -2.1429 -0.7212 6 6 2.0831 -3.3102 -1.3527 7 8 2.3441 -4.3623 -0.8022 8 6 1.5098 -3.3111 -2.7118 9 6 1.2208 -4.4047 -3.4817 10 6 0.6996 -3.8517 -4.6725 11 6 0.2116 -4.6103 -5.8797 12 6 0.6150 -6.0814 -6.0003 13 6 1.2541 -5.0353 -6.9159 14 7 0.7271 -2.5591 -4.5250 15 8 1.1713 -2.2359 -3.4482 16 6 2.8825 -1.9399 0.6333 17 6 2.0664 -0.7703 1.2245 18 6 0.9063 -1.3019 2.0684 19 6 2.9671 0.1336 2.0686 20 7 3.4648 -0.6157 3.2249 21 6 4.2950 -0.0083 4.1287 22 1 4.5827 1.0234 3.9893 23 6 4.7670 -0.7184 5.2241 24 7 4.4161 -1.9754 5.3943 25 14 5.8990 0.1105 6.4574 26 1 5.0870 0.7403 7.5292 27 1 6.8068 -0.9019 7.0543 28 1 6.7033 1.1519 5.7689 29 1 -0.3634 0.4797 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3253 -0.7880 -2.0205 33 1 2.9968 -0.3224 -1.5779 34 1 1.3582 -5.4474 -3.2359 35 1 -0.7753 -4.3272 -6.2457 36 1 1.2329 -6.5004 -5.2062 37 1 -0.1068 -6.7662 -6.4454 38 1 0.9528 -5.0321 -7.9634 39 1 2.2929 -4.7661 -6.7244 40 1 3.9374 -1.6731 0.5692 41 1 2.7526 -2.8376 1.2377 42 1 0.3104 -0.4659 2.4347 43 1 0.2813 -1.9534 1.4576 44 1 1.3005 -1.8652 2.9142 45 1 3.8091 0.4730 1.4654 46 1 2.3962 0.9958 2.4133 47 1 3.2062 -1.5421 3.3504 48 1 4.7456 -2.4716 6.1599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182774897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:30 Heat of formation + Delta-G solvation = 73.348765 kcal Electronic energy + Delta-G solvation = -29077.485469 eV Core-core repulsion = 25137.356949 eV Total energy + Delta-G solvation = -3940.128520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -45.27937 -40.37509 -38.40799 -38.02096 -34.92812 -33.68122 -33.23486 -32.12909 -31.51471 -29.63730 -27.64929 -26.03115 -25.53817 -25.03478 -23.88839 -23.18838 -22.57206 -22.01908 -21.05113 -19.67176 -18.68068 -18.07004 -17.84279 -16.95911 -16.58990 -16.13605 -15.99641 -15.42963 -14.86797 -14.60967 -14.38356 -14.21818 -14.02579 -13.84929 -13.52549 -13.10748 -13.02599 -12.59866 -12.53159 -12.30197 -12.14783 -12.07777 -11.99776 -11.60330 -11.48098 -11.31568 -11.25852 -10.99767 -10.90895 -10.81209 -10.47530 -10.35705 -10.30551 -10.20173 -10.19512 -9.92677 -9.90381 -9.61913 -8.88297 -8.75659 -6.92020 -5.75749 -3.04673 0.58912 1.69449 2.34172 2.87474 2.94400 3.19247 3.44189 3.49344 3.51157 3.60901 4.10592 4.32983 4.41617 4.54883 4.57369 4.60136 4.64429 4.80562 4.85021 4.93903 5.05562 5.16594 5.30511 5.36573 5.38997 5.48854 5.52452 5.53532 5.57457 5.60618 5.62952 5.64330 5.78332 5.90208 5.97327 6.00444 6.06031 6.12071 6.20373 6.24016 6.42708 6.54488 6.66817 6.75825 6.85133 7.34505 7.69735 7.70610 7.93237 8.42803 9.54240 10.11196 10.45551 11.46898 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.002426 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.298454 B =11541.180934 C =12160.934857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.092 0.908 4 C 0.097 3.903 5 N -0.605 5.605 6 C 0.618 3.382 7 O -0.512 6.512 8 C -0.069 4.069 9 C -0.153 4.153 10 C 0.043 3.957 11 C -0.089 4.089 12 C -0.162 4.162 13 C -0.162 4.162 14 N -0.343 5.343 15 O 0.119 5.881 16 C 0.121 3.879 17 C -0.075 4.075 18 C -0.133 4.133 19 C 0.168 3.832 20 N -0.731 5.731 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.022 0.978 46 H 0.024 0.976 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 -2.832 -23.577 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.025 4.025 5 N -0.337 5.337 6 C 0.403 3.597 7 O -0.388 6.388 8 C -0.134 4.134 9 C -0.175 4.175 10 C -0.115 4.115 11 C -0.107 4.107 12 C -0.200 4.200 13 C -0.200 4.200 14 N -0.044 5.044 15 O 0.046 5.954 16 C 0.000 4.000 17 C -0.076 4.076 18 C -0.190 4.190 19 C 0.040 3.960 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.200 0.800 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.042 0.958 47 H 0.220 0.780 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.355 -2.357 -24.008 26.252 hybrid contribution 0.712 -0.512 1.086 1.395 sum -9.643 -2.869 -22.923 25.033 Atomic orbital electron populations 1.21917 0.94433 1.01871 1.01765 1.22140 0.96381 0.99648 0.93423 0.89013 1.22761 1.01372 0.81067 0.97341 1.48885 1.61174 1.05156 1.18518 1.16043 0.78765 0.83334 0.81543 1.90906 1.52875 1.30315 1.64679 1.24273 1.05920 0.87164 0.96092 1.22766 1.01405 1.01220 0.92120 1.22629 1.02344 0.89563 0.96937 1.20120 1.00183 0.96500 0.93945 1.23076 1.03593 0.90510 1.02809 1.23047 0.98177 1.02530 0.96254 1.73692 1.14515 1.16217 0.99990 1.85069 1.58462 1.32452 1.19375 1.22636 0.97570 0.99481 0.80355 1.21728 0.96288 0.95004 0.94588 1.21873 0.96794 1.00821 0.99509 1.20720 0.93673 0.92970 0.88647 1.42405 1.57475 1.12919 1.24791 1.19197 1.20513 0.95706 1.01688 0.91218 1.24734 1.01127 0.96078 0.98967 1.69650 1.49005 1.08438 1.30931 0.86206 0.80372 0.78144 0.81544 1.21788 1.21823 1.20808 0.91693 0.92986 0.92552 0.89494 0.90225 0.80022 0.85649 0.87988 0.87560 0.87733 0.88385 0.89692 0.89165 0.92274 0.93380 0.91359 0.96062 0.95803 0.78038 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 7.93 37.16 0.29 -1.22 16 2 C -0.10 -1.12 3.30 -89.22 -0.29 -1.42 16 3 H 0.09 0.99 7.71 -51.93 -0.40 0.59 16 4 C 0.10 1.09 6.28 -2.41 -0.02 1.08 16 5 N -0.61 -8.43 3.32 -170.54 -0.57 -9.00 16 6 C 0.62 9.18 7.91 -12.48 -0.10 9.08 16 7 O -0.51 -9.20 17.18 5.30 0.09 -9.10 16 8 C -0.07 -0.86 7.11 -36.32 -0.26 -1.12 16 9 C -0.15 -1.68 10.26 -38.95 -0.40 -2.08 16 10 C 0.04 0.45 6.94 -82.17 -0.57 -0.12 16 11 C -0.09 -0.68 6.33 -91.76 -0.58 -1.26 16 12 C -0.16 -0.93 10.04 -26.72 -0.27 -1.20 16 13 C -0.16 -1.01 10.23 -26.73 -0.27 -1.28 16 14 N -0.34 -4.13 12.04 33.52 0.40 -3.73 16 15 O 0.12 1.43 8.51 15.55 0.13 1.56 16 16 C 0.12 1.93 5.71 -2.40 -0.01 1.91 16 17 C -0.07 -1.12 0.73 -153.11 -0.11 -1.24 16 18 C -0.13 -2.06 7.07 37.15 0.26 -1.80 16 19 C 0.17 3.13 4.87 -4.04 -0.02 3.11 16 20 N -0.73 -17.61 5.13 -59.91 -0.31 -17.91 16 21 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 25 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.06 0.70 6.84 -51.93 -0.36 0.34 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.64 6.76 -51.93 -0.35 0.29 16 32 H 0.09 0.89 5.34 -51.93 -0.28 0.62 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.18 1.70 7.61 -52.48 -0.40 1.30 16 35 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.59 7.33 -51.93 -0.38 0.21 16 37 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.43 7.83 -51.93 -0.41 1.02 16 41 H 0.09 1.64 7.60 -51.93 -0.39 1.24 16 42 H 0.06 0.87 6.89 -51.93 -0.36 0.51 16 43 H 0.05 0.69 6.71 -51.93 -0.35 0.34 16 44 H 0.07 1.25 6.78 -51.93 -0.35 0.90 16 45 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.38 9.81 6.19 -40.82 -0.25 9.56 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -31.77 385.14 -8.54 -40.31 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.20 Total: 6.73 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.59 Total: -4.70 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.26 Total: -57.82 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.22 Total: -7.55 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.77 -8.54 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182774897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.657 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds