Wall clock time and date at job start Tue Mar 31 2020 17:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.30198 * 2 1 4 4 C 1.54386 * 110.43319 * 237.76596 * 2 1 3 5 5 N 1.48146 * 104.61890 * 264.94845 * 4 2 1 6 6 C 1.34775 * 127.84246 * 140.39015 * 5 4 2 7 7 O 1.21578 * 119.99970 * 179.97438 * 6 5 4 8 8 C 1.47509 * 119.99414 * 359.97438 * 6 5 4 9 9 C 1.36827 * 126.94195 * 179.70874 * 8 6 5 10 10 C 1.41255 * 103.84929 * 179.97438 * 9 8 6 11 11 C 1.50704 * 126.70855 * 180.14265 * 10 9 8 12 12 C 1.53009 * 117.49513 * 343.87875 * 11 10 9 13 13 C 1.53003 * 59.99884 * 252.51519 * 12 11 10 14 14 N 1.30129 * 106.59108 * 0.33509 * 10 9 8 15 15 O 1.20886 * 111.98020 * 359.78251 * 14 10 9 16 16 C 1.48152 * 104.32191 * 320.41410 * 5 4 2 17 17 C 1.54286 * 110.34500 * 122.17143 * 2 1 3 18 18 C 1.52994 * 110.34237 * 0.02562 * 17 2 1 19 19 C 1.53000 * 110.34248 * 237.84671 * 17 2 1 20 20 N 1.46499 * 109.46840 * 179.97438 * 19 17 2 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47203 * 89.99650 * 25 23 21 27 27 H 1.48501 * 109.47104 * 209.99764 * 25 23 21 28 28 H 1.48504 * 109.46767 * 329.99904 * 25 23 21 29 29 H 1.09004 * 109.47334 * 297.82410 * 1 2 3 30 30 H 1.08998 * 109.47600 * 57.82764 * 1 2 3 31 31 H 1.09001 * 109.47098 * 177.82643 * 1 2 3 32 32 H 1.09000 * 110.40846 * 23.73133 * 4 2 1 33 33 H 1.08997 * 110.40872 * 146.16117 * 4 2 1 34 34 H 1.08003 * 128.07340 * 0.02843 * 9 8 6 35 35 H 1.08998 * 115.55557 * 129.58842 * 11 10 9 36 36 H 1.08996 * 117.49788 * 0.02562 * 12 11 10 37 37 H 1.09002 * 117.49417 * 145.02065 * 12 11 10 38 38 H 1.09000 * 117.49405 * 252.51575 * 13 12 11 39 39 H 1.09000 * 117.50164 * 107.49253 * 13 12 11 40 40 H 1.09001 * 110.40521 * 280.80462 * 16 5 4 41 41 H 1.08994 * 110.41051 * 158.36695 * 16 5 4 42 42 H 1.08996 * 109.47469 * 298.52526 * 18 17 2 43 43 H 1.09004 * 109.47256 * 58.52617 * 18 17 2 44 44 H 1.09003 * 109.47302 * 178.52245 * 18 17 2 45 45 H 1.09002 * 109.47398 * 300.00305 * 19 17 2 46 46 H 1.09001 * 109.47194 * 60.00486 * 19 17 2 47 47 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 48 48 H 0.96996 * 120.00586 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2237 5 7 2.3178 -2.1429 -0.7212 6 6 2.0831 -3.3102 -1.3527 7 8 2.3441 -4.3623 -0.8022 8 6 1.5098 -3.3111 -2.7118 9 6 1.2208 -4.4047 -3.4817 10 6 0.6996 -3.8517 -4.6725 11 6 0.2116 -4.6103 -5.8797 12 6 0.6150 -6.0814 -6.0003 13 6 1.2541 -5.0353 -6.9159 14 7 0.7271 -2.5591 -4.5250 15 8 1.1713 -2.2359 -3.4482 16 6 2.8825 -1.9399 0.6333 17 6 2.0664 -0.7703 1.2245 18 6 0.9063 -1.3019 2.0684 19 6 2.9671 0.1336 2.0686 20 7 3.4648 -0.6157 3.2249 21 6 4.2950 -0.0083 4.1287 22 1 4.5827 1.0234 3.9893 23 6 4.7670 -0.7184 5.2241 24 7 4.4161 -1.9754 5.3943 25 14 5.8990 0.1105 6.4574 26 1 5.0870 0.7403 7.5292 27 1 6.8068 -0.9019 7.0543 28 1 6.7033 1.1519 5.7689 29 1 -0.3634 0.4797 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3253 -0.7880 -2.0205 33 1 2.9968 -0.3224 -1.5779 34 1 1.3582 -5.4474 -3.2359 35 1 -0.7753 -4.3272 -6.2457 36 1 1.2329 -6.5004 -5.2062 37 1 -0.1068 -6.7662 -6.4454 38 1 0.9528 -5.0321 -7.9634 39 1 2.2929 -4.7661 -6.7244 40 1 3.9374 -1.6731 0.5692 41 1 2.7526 -2.8376 1.2377 42 1 0.3104 -0.4659 2.4347 43 1 0.2813 -1.9534 1.4576 44 1 1.3005 -1.8652 2.9142 45 1 3.8091 0.4730 1.4654 46 1 2.3962 0.9958 2.4133 47 1 3.2062 -1.5421 3.3504 48 1 4.7456 -2.4716 6.1599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182774897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:28 Heat of formation + Delta-G solvation = 54.634033 kcal Electronic energy + Delta-G solvation = -29078.297001 eV Core-core repulsion = 25137.356949 eV Total energy + Delta-G solvation = -3940.940052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -46.16871 -41.56017 -39.64760 -38.58140 -36.55619 -34.79995 -34.39621 -33.11906 -33.06406 -31.20217 -28.81500 -27.52598 -26.70993 -25.79607 -25.33257 -24.39765 -23.25724 -22.90622 -22.22742 -20.58357 -19.92025 -19.33359 -18.96471 -18.42652 -17.56403 -17.25363 -17.11271 -16.47952 -16.22382 -15.71996 -15.51425 -15.40954 -15.34216 -14.91067 -14.74898 -14.72884 -14.45120 -13.91133 -13.51146 -13.27300 -13.21328 -13.04144 -12.96728 -12.83441 -12.59720 -12.49308 -12.43037 -12.42299 -12.23512 -12.07436 -11.95406 -11.57575 -11.51663 -11.42135 -11.34969 -11.22814 -11.02875 -10.90322 -10.74446 -9.93359 -8.94226 -7.91034 -5.18883 -0.39834 0.86237 1.27650 1.49009 1.50305 1.58598 1.75600 1.91761 2.58571 2.60636 2.92770 3.20428 3.42423 3.50310 3.51342 3.73990 3.76530 3.79362 3.92353 4.00838 4.11139 4.17997 4.24940 4.29270 4.33318 4.36469 4.50783 4.64218 4.67541 4.70914 4.77012 4.78537 4.82456 4.86408 4.97287 5.00813 5.02283 5.07232 5.08172 5.15060 5.20354 5.25671 5.37366 5.42155 5.54147 5.58464 6.21718 6.30918 6.61268 6.94975 7.37818 8.15107 8.36692 9.32556 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023961 B = 0.002426 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.298454 B =11541.180934 C =12160.934857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.111 0.889 4 C 0.098 3.902 5 N -0.602 5.602 6 C 0.618 3.382 7 O -0.553 6.553 8 C -0.081 4.081 9 C -0.145 4.145 10 C 0.049 3.951 11 C -0.108 4.108 12 C -0.152 4.152 13 C -0.159 4.159 14 N -0.356 5.356 15 O 0.118 5.882 16 C 0.125 3.875 17 C -0.066 4.066 18 C -0.125 4.125 19 C 0.167 3.833 20 N -0.743 5.743 21 C -0.237 4.237 22 H 0.079 0.921 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.971 3.029 26 H -0.289 1.289 27 H -0.300 1.300 28 H -0.268 1.268 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.195 0.805 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.031 0.969 45 H 0.030 0.970 46 H 0.032 0.968 47 H 0.374 0.626 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 -1.503 -26.044 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.129 0.871 4 C -0.024 4.024 5 N -0.333 5.333 6 C 0.404 3.596 7 O -0.432 6.432 8 C -0.147 4.147 9 C -0.167 4.167 10 C -0.108 4.108 11 C -0.127 4.127 12 C -0.189 4.189 13 C -0.196 4.196 14 N -0.058 5.058 15 O 0.047 5.953 16 C 0.003 3.997 17 C -0.067 4.067 18 C -0.182 4.182 19 C 0.040 3.960 20 N -0.387 5.387 21 C -0.369 4.369 22 H 0.096 0.904 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.216 1.216 27 H -0.227 1.227 28 H -0.193 1.193 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.212 0.788 35 H 0.154 0.846 36 H 0.118 0.882 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.207 0.793 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.229 -0.954 -26.518 28.814 hybrid contribution 0.942 -0.915 1.738 2.178 sum -10.287 -1.869 -24.780 26.896 Atomic orbital electron populations 1.21896 0.93240 1.01645 1.02923 1.22147 0.97296 0.99993 0.91253 0.87062 1.22974 1.02697 0.79235 0.97458 1.48897 1.60529 1.06252 1.17663 1.16277 0.78216 0.82873 0.82187 1.90877 1.54696 1.31702 1.65945 1.23866 1.07306 0.88106 0.95405 1.23047 1.00161 1.01576 0.91961 1.23060 1.01153 0.89123 0.97500 1.20323 1.01079 0.97687 0.93570 1.23201 1.03496 0.89794 1.02425 1.23132 0.97293 1.02181 0.97040 1.73673 1.15102 1.17107 0.99934 1.85047 1.58799 1.32111 1.19389 1.22384 0.97378 0.98568 0.81367 1.21588 0.95293 0.94443 0.95396 1.21786 0.97038 1.00896 0.98464 1.20897 0.94406 0.93247 0.87412 1.42630 1.57232 1.12828 1.25966 1.19636 1.19634 0.95971 1.01687 0.90354 1.25538 1.03448 0.96769 1.01288 1.69821 1.50881 1.09989 1.31517 0.85174 0.78433 0.77149 0.79219 1.21583 1.22685 1.19288 0.91666 0.90631 0.93576 0.87954 0.88602 0.78764 0.84575 0.88194 0.85530 0.85889 0.89326 0.90769 0.92273 0.91216 0.92388 0.94954 0.95253 0.95041 0.79306 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.93 71.98 0.57 -2.03 16 2 C -0.09 -1.84 3.30 -9.89 -0.03 -1.87 16 3 H 0.11 1.99 7.71 -2.38 -0.02 1.97 16 4 C 0.10 2.00 6.28 86.53 0.54 2.55 16 5 N -0.60 -16.71 3.32 -811.74 -2.69 -19.40 16 6 C 0.62 18.57 7.91 86.69 0.69 19.25 16 7 O -0.55 -20.67 17.18 -3.96 -0.07 -20.74 16 8 C -0.08 -1.99 7.11 24.39 0.17 -1.81 16 9 C -0.15 -3.05 10.26 22.68 0.23 -2.82 16 10 C 0.05 0.95 6.94 43.55 0.30 1.26 16 11 C -0.11 -1.40 6.33 -11.53 -0.07 -1.48 16 12 C -0.15 -1.36 10.04 30.60 0.31 -1.05 16 13 C -0.16 -1.60 10.23 30.60 0.31 -1.29 16 14 N -0.36 -8.01 12.04 -48.87 -0.59 -8.60 16 15 O 0.12 2.66 8.51 65.83 0.56 3.22 16 16 C 0.13 4.12 5.71 86.53 0.49 4.61 16 17 C -0.07 -1.96 0.73 -51.27 -0.04 -2.00 16 18 C -0.12 -3.91 7.07 71.98 0.51 -3.40 16 19 C 0.17 6.10 4.87 86.38 0.42 6.52 16 20 N -0.74 -36.42 5.13 -343.45 -1.76 -38.18 16 21 C -0.24 -12.96 9.99 84.03 0.84 -12.12 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 24 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 25 Si 0.97 46.23 29.55 68.60 2.03 48.25 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 H 0.06 1.23 6.84 -2.38 -0.02 1.21 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.96 6.76 -2.39 -0.02 0.94 16 32 H 0.10 1.84 5.34 -2.39 -0.01 1.83 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.20 3.46 7.61 -2.91 -0.02 3.44 16 35 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 0.95 7.33 -2.39 -0.02 0.93 16 37 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 2.58 7.83 -2.39 -0.02 2.56 16 41 H 0.06 2.31 7.60 -2.39 -0.02 2.29 16 42 H 0.07 2.01 6.89 -2.39 -0.02 1.99 16 43 H 0.06 1.68 6.71 -2.38 -0.02 1.66 16 44 H 0.03 1.24 6.78 -2.39 -0.02 1.22 16 45 H 0.03 1.05 8.10 -2.39 -0.02 1.03 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.37 19.91 6.19 -92.71 -0.57 19.33 16 48 H 0.25 15.02 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -70.22 385.14 3.89 -66.33 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.41 Total: 28.52 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.72 Total: 0.30 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -4.76 Total: -125.89 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.49 Total: -17.52 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.22 3.89 -66.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182774897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.967 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds