Wall clock time and date at job start Tue Mar 31 2020 17:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.39051 * 2 1 4 4 C 1.54388 * 110.34275 * 237.77374 * 2 1 3 5 5 N 1.48144 * 104.61909 * 217.26399 * 4 2 1 6 6 C 1.34777 * 127.83970 * 219.58818 * 5 4 2 7 7 O 1.21283 * 120.00463 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.74267 * 6 5 4 9 9 O 1.42899 * 109.47143 * 180.27800 * 8 6 5 10 10 C 1.35911 * 117.00154 * 179.97438 * 9 8 6 11 11 C 1.39144 * 120.47704 * 179.97438 * 10 9 8 12 12 C 1.38532 * 118.37786 * 180.02562 * 11 10 9 13 13 C 1.38257 * 119.22041 * 359.97438 * 12 11 10 14 14 N 1.31841 * 120.88548 * 0.02562 * 13 12 11 15 15 C 1.31845 * 121.78538 * 359.70001 * 14 13 12 16 16 C 1.48146 * 104.32470 * 39.83852 * 5 4 2 17 17 C 1.54285 * 110.34503 * 122.23519 * 2 1 3 18 18 C 1.53001 * 110.34265 * 359.97438 * 17 2 1 19 19 C 1.53000 * 110.34125 * 237.74133 * 17 2 1 20 20 N 1.46505 * 109.46978 * 179.97438 * 19 17 2 21 21 C 1.36942 * 119.99745 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00430 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99666 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99955 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00274 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47536 * 89.99629 * 25 23 21 27 27 H 1.48505 * 109.46920 * 209.99753 * 25 23 21 28 28 H 1.48502 * 109.46637 * 329.99333 * 25 23 21 29 29 H 1.09001 * 109.46887 * 180.78127 * 1 2 3 30 30 H 1.09002 * 109.46840 * 300.77307 * 1 2 3 31 31 H 1.08993 * 109.47158 * 60.77705 * 1 2 3 32 32 H 1.08993 * 110.40903 * 98.47663 * 4 2 1 33 33 H 1.08999 * 110.40599 * 336.04022 * 4 2 1 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 1.08002 * 120.80789 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.38823 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.55572 * 179.97438 * 13 12 11 39 39 H 1.07992 * 119.66371 * 180.29029 * 15 14 13 40 40 H 1.09000 * 110.40594 * 78.94359 * 16 5 4 41 41 H 1.09001 * 110.40635 * 201.36919 * 16 5 4 42 42 H 1.09001 * 109.47066 * 60.00142 * 18 17 2 43 43 H 1.08994 * 109.46851 * 180.02562 * 18 17 2 44 44 H 1.08999 * 109.47018 * 299.99920 * 18 17 2 45 45 H 1.09004 * 109.47120 * 299.99585 * 19 17 2 46 46 H 1.08996 * 109.47364 * 59.99848 * 19 17 2 47 47 H 0.96989 * 120.00034 * 0.02562 * 20 19 17 48 48 H 0.96998 * 120.00110 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0667 -0.7719 -1.2246 5 7 3.2664 -1.4817 -0.7228 6 6 4.4424 -1.6663 -1.3547 7 8 5.3365 -2.2752 -0.8063 8 6 4.6442 -1.1217 -2.7453 9 8 5.9590 -1.4494 -3.1991 10 6 6.3046 -1.0290 -4.4445 11 6 7.5672 -1.3078 -4.9584 12 6 7.8736 -0.8582 -6.2323 13 6 6.9224 -0.1531 -6.9461 14 7 5.7347 0.0944 -6.4299 15 6 5.4018 -0.3204 -5.2235 16 6 2.8780 -1.9478 0.6287 17 6 2.0664 -0.7716 1.2236 18 6 0.9062 -1.3031 2.0677 19 6 2.9692 0.1306 2.0673 20 7 3.4669 -0.6200 3.2229 21 6 4.2997 -0.0144 4.1256 22 1 4.5894 1.0166 3.9860 23 6 4.7708 -0.7254 5.2208 24 7 5.5709 -0.1432 6.0887 25 14 4.2693 -2.5085 5.4628 26 1 5.2465 -3.3945 4.7809 27 1 4.2445 -2.8231 6.9139 28 1 2.9181 -2.7252 4.8861 29 1 -0.3633 -1.0276 0.0140 30 1 -0.3633 0.5258 0.8830 31 1 -0.3633 0.5017 -0.8968 32 1 2.3400 -0.0794 -2.0206 33 1 1.3235 -1.4860 -1.5793 34 1 3.9076 -1.5612 -3.4181 35 1 4.5237 -0.0385 -2.7324 36 1 8.2910 -1.8607 -4.3778 37 1 8.8438 -1.0567 -6.6632 38 1 7.1556 0.2004 -7.9397 39 1 4.4176 -0.1024 -4.8361 40 1 2.2595 -2.8426 0.5590 41 1 3.7641 -2.1433 1.2325 42 1 0.2954 -1.9743 1.4640 43 1 1.3007 -1.8447 2.9274 44 1 0.2961 -0.4686 2.4132 45 1 3.8112 0.4689 1.4634 46 1 2.3999 0.9934 2.4128 47 1 3.2071 -1.5460 3.3482 48 1 5.9004 -0.6402 6.8538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182896978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:10 Heat of formation + Delta-G solvation = -6.862093 kcal Electronic energy + Delta-G solvation = -28862.454004 eV Core-core repulsion = 24918.847280 eV Total energy + Delta-G solvation = -3943.606724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.07048 -40.38207 -38.88614 -37.73599 -35.00500 -33.44260 -32.77170 -31.68781 -30.87823 -30.13659 -29.10581 -27.02901 -25.84871 -25.70001 -23.98859 -23.30453 -22.98214 -21.11849 -19.66848 -18.81569 -18.62173 -17.85939 -17.10661 -17.08399 -16.82046 -16.43444 -15.73676 -15.42743 -14.90901 -14.77701 -14.59037 -14.27290 -13.99391 -13.88856 -13.64866 -13.49572 -13.29361 -13.05911 -12.82124 -12.65422 -12.54532 -12.20067 -12.09935 -11.84137 -11.70802 -11.60470 -11.46955 -11.30487 -10.89553 -10.62852 -10.40988 -10.25746 -10.08810 -10.03190 -9.98246 -9.75129 -9.53889 -8.88954 -8.84354 -8.78135 -7.21017 -5.74213 -3.09650 0.73233 0.92660 2.16295 2.47024 3.21300 3.37307 3.42554 3.43380 3.47585 4.05750 4.12377 4.30093 4.39740 4.50017 4.56765 4.57888 4.61494 4.66454 4.71966 4.77117 5.01187 5.08351 5.15145 5.18511 5.21402 5.32793 5.41355 5.54761 5.58692 5.59124 5.66385 5.70832 5.74204 5.74847 5.88336 5.95085 6.05231 6.07031 6.14223 6.24260 6.33588 6.50805 6.62166 6.71189 6.80305 7.41687 7.56623 8.00907 8.04034 8.44484 9.23082 9.95387 10.14495 11.44375 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002865 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.320212 B = 9771.041033 C =11130.337499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.101 3.899 5 N -0.618 5.618 6 C 0.535 3.465 7 O -0.508 6.508 8 C 0.045 3.955 9 O -0.281 6.281 10 C 0.083 3.917 11 C -0.105 4.105 12 C -0.130 4.130 13 C 0.057 3.943 14 N -0.450 5.450 15 C 0.013 3.987 16 C 0.114 3.886 17 C -0.080 4.080 18 C -0.136 4.136 19 C 0.174 3.826 20 N -0.753 5.753 21 C -0.242 4.242 22 H 0.089 0.911 23 C 0.005 3.995 24 N -0.934 5.934 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.030 0.970 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -1.339 -26.177 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.104 0.896 4 C -0.022 4.022 5 N -0.354 5.354 6 C 0.321 3.679 7 O -0.381 6.381 8 C -0.034 4.034 9 O -0.192 6.192 10 C 0.035 3.965 11 C -0.132 4.132 12 C -0.150 4.150 13 C -0.101 4.101 14 N -0.159 5.159 15 C -0.144 4.144 16 C -0.008 4.008 17 C -0.082 4.082 18 C -0.194 4.194 19 C 0.046 3.954 20 N -0.399 5.399 21 C -0.372 4.372 22 H 0.107 0.893 23 C -0.191 4.191 24 N -0.582 5.582 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.048 0.952 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.414 -1.174 -26.141 27.198 hybrid contribution 0.180 -1.546 0.759 1.731 sum -7.233 -2.720 -25.383 26.533 Atomic orbital electron populations 1.21899 0.93906 1.02227 1.01954 1.22134 0.96240 0.99882 0.93413 0.89569 1.22601 0.86940 0.95507 0.97132 1.48746 1.12270 1.56048 1.18332 1.19398 0.81263 0.80817 0.86377 1.90817 1.40456 1.40184 1.66688 1.22502 0.84325 1.01751 0.94829 1.86195 1.31594 1.73312 1.28109 1.20152 0.95258 0.95668 0.85424 1.21026 0.94748 1.01334 0.96061 1.22052 1.01174 0.97785 0.93972 1.22682 0.89109 0.97821 1.00498 1.67517 1.19404 1.17489 1.11519 1.22920 1.00059 0.99720 0.91746 1.22668 1.00225 0.95933 0.81972 1.21855 0.96025 0.95456 0.94842 1.21903 0.96773 1.01167 0.99527 1.20626 0.93992 0.92843 0.87903 1.42734 1.58604 1.11826 1.26749 1.19020 1.19641 0.97608 1.00927 0.89324 1.24653 0.99464 0.97618 0.97315 1.69697 1.37346 1.36273 1.14900 0.86602 0.78276 0.86826 0.77148 1.20924 1.21698 1.20335 0.92048 0.91601 0.92839 0.90552 0.90574 0.88836 0.88642 0.83643 0.83896 0.82445 0.82527 0.91189 0.88543 0.92743 0.91957 0.91654 0.95641 0.95237 0.80577 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 7.93 37.16 0.29 -0.81 16 2 C -0.10 -0.96 3.31 -89.22 -0.30 -1.26 16 3 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 4 C 0.10 0.87 6.46 -2.41 -0.02 0.85 16 5 N -0.62 -7.99 3.31 -169.06 -0.56 -8.55 16 6 C 0.54 7.91 7.99 -10.98 -0.09 7.83 16 7 O -0.51 -10.26 16.76 -14.36 -0.24 -10.51 16 8 C 0.04 0.46 4.21 36.01 0.15 0.61 16 9 O -0.28 -3.65 9.68 -39.37 -0.38 -4.03 16 10 C 0.08 0.90 6.71 -39.07 -0.26 0.64 16 11 C -0.11 -1.00 10.13 -39.14 -0.40 -1.40 16 12 C -0.13 -0.96 10.11 -39.47 -0.40 -1.36 16 13 C 0.06 0.46 11.18 -17.54 -0.20 0.26 16 14 N -0.45 -4.61 10.35 -13.13 -0.14 -4.75 16 15 C 0.01 0.13 10.22 -17.37 -0.18 -0.05 16 16 C 0.11 1.69 5.93 -2.20 -0.01 1.68 16 17 C -0.08 -1.11 0.74 -152.89 -0.11 -1.23 16 18 C -0.14 -1.76 7.11 37.16 0.26 -1.49 16 19 C 0.17 3.27 4.96 -4.04 -0.02 3.25 16 20 N -0.75 -17.82 4.60 -59.90 -0.28 -18.10 16 21 C -0.24 -6.97 10.47 -15.06 -0.16 -7.12 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -29.95 13.97 55.49 0.78 -29.18 16 25 Si 0.88 22.56 27.74 -169.99 -4.71 17.84 16 26 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 29 H 0.06 0.45 6.61 -51.93 -0.34 0.11 16 30 H 0.07 0.55 6.98 -51.93 -0.36 0.19 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.47 7.31 -51.93 -0.38 0.09 16 33 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 34 H 0.09 0.67 7.67 -51.92 -0.40 0.27 16 35 H 0.10 0.77 7.51 -51.93 -0.39 0.38 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.16 1.13 6.32 -52.49 -0.33 0.80 16 40 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 41 H 0.10 1.84 6.96 -51.93 -0.36 1.48 16 42 H 0.05 0.56 6.67 -51.93 -0.35 0.21 16 43 H 0.06 0.97 6.74 -51.93 -0.35 0.62 16 44 H 0.06 0.80 6.89 -51.93 -0.36 0.44 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.36 8.32 3.85 -40.82 -0.16 8.16 16 48 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -37.47 381.99 -8.42 -45.89 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.12 Total: 5.15 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.52 Total: 0.47 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.20 Total: -60.58 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.62 Total: -14.53 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.47 -8.42 -45.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182896978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.028 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds