Wall clock time and date at job start Tue Mar 31 2020 17:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.39051 * 2 1 4 4 C 1.54388 * 110.34275 * 237.77374 * 2 1 3 5 5 N 1.48144 * 104.61909 * 217.26399 * 4 2 1 6 6 C 1.34777 * 127.83970 * 219.58818 * 5 4 2 7 7 O 1.21283 * 120.00463 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.74267 * 6 5 4 9 9 O 1.42899 * 109.47143 * 180.27800 * 8 6 5 10 10 C 1.35911 * 117.00154 * 179.97438 * 9 8 6 11 11 C 1.39144 * 120.47704 * 179.97438 * 10 9 8 12 12 C 1.38532 * 118.37786 * 180.02562 * 11 10 9 13 13 C 1.38257 * 119.22041 * 359.97438 * 12 11 10 14 14 N 1.31841 * 120.88548 * 0.02562 * 13 12 11 15 15 C 1.31845 * 121.78538 * 359.70001 * 14 13 12 16 16 C 1.48146 * 104.32470 * 39.83852 * 5 4 2 17 17 C 1.54285 * 110.34503 * 122.23519 * 2 1 3 18 18 C 1.53001 * 110.34265 * 359.97438 * 17 2 1 19 19 C 1.53000 * 110.34125 * 237.74133 * 17 2 1 20 20 N 1.46505 * 109.46978 * 179.97438 * 19 17 2 21 21 C 1.36942 * 119.99745 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00430 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99666 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99955 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00274 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47536 * 89.99629 * 25 23 21 27 27 H 1.48505 * 109.46920 * 209.99753 * 25 23 21 28 28 H 1.48502 * 109.46637 * 329.99333 * 25 23 21 29 29 H 1.09001 * 109.46887 * 180.78127 * 1 2 3 30 30 H 1.09002 * 109.46840 * 300.77307 * 1 2 3 31 31 H 1.08993 * 109.47158 * 60.77705 * 1 2 3 32 32 H 1.08993 * 110.40903 * 98.47663 * 4 2 1 33 33 H 1.08999 * 110.40599 * 336.04022 * 4 2 1 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 1.08002 * 120.80789 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.38823 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.55572 * 179.97438 * 13 12 11 39 39 H 1.07992 * 119.66371 * 180.29029 * 15 14 13 40 40 H 1.09000 * 110.40594 * 78.94359 * 16 5 4 41 41 H 1.09001 * 110.40635 * 201.36919 * 16 5 4 42 42 H 1.09001 * 109.47066 * 60.00142 * 18 17 2 43 43 H 1.08994 * 109.46851 * 180.02562 * 18 17 2 44 44 H 1.08999 * 109.47018 * 299.99920 * 18 17 2 45 45 H 1.09004 * 109.47120 * 299.99585 * 19 17 2 46 46 H 1.08996 * 109.47364 * 59.99848 * 19 17 2 47 47 H 0.96989 * 120.00034 * 0.02562 * 20 19 17 48 48 H 0.96998 * 120.00110 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0667 -0.7719 -1.2246 5 7 3.2664 -1.4817 -0.7228 6 6 4.4424 -1.6663 -1.3547 7 8 5.3365 -2.2752 -0.8063 8 6 4.6442 -1.1217 -2.7453 9 8 5.9590 -1.4494 -3.1991 10 6 6.3046 -1.0290 -4.4445 11 6 7.5672 -1.3078 -4.9584 12 6 7.8736 -0.8582 -6.2323 13 6 6.9224 -0.1531 -6.9461 14 7 5.7347 0.0944 -6.4299 15 6 5.4018 -0.3204 -5.2235 16 6 2.8780 -1.9478 0.6287 17 6 2.0664 -0.7716 1.2236 18 6 0.9062 -1.3031 2.0677 19 6 2.9692 0.1306 2.0673 20 7 3.4669 -0.6200 3.2229 21 6 4.2997 -0.0144 4.1256 22 1 4.5894 1.0166 3.9860 23 6 4.7708 -0.7254 5.2208 24 7 5.5709 -0.1432 6.0887 25 14 4.2693 -2.5085 5.4628 26 1 5.2465 -3.3945 4.7809 27 1 4.2445 -2.8231 6.9139 28 1 2.9181 -2.7252 4.8861 29 1 -0.3633 -1.0276 0.0140 30 1 -0.3633 0.5258 0.8830 31 1 -0.3633 0.5017 -0.8968 32 1 2.3400 -0.0794 -2.0206 33 1 1.3235 -1.4860 -1.5793 34 1 3.9076 -1.5612 -3.4181 35 1 4.5237 -0.0385 -2.7324 36 1 8.2910 -1.8607 -4.3778 37 1 8.8438 -1.0567 -6.6632 38 1 7.1556 0.2004 -7.9397 39 1 4.4176 -0.1024 -4.8361 40 1 2.2595 -2.8426 0.5590 41 1 3.7641 -2.1433 1.2325 42 1 0.2954 -1.9743 1.4640 43 1 1.3007 -1.8447 2.9274 44 1 0.2961 -0.4686 2.4132 45 1 3.8112 0.4689 1.4634 46 1 2.3999 0.9934 2.4128 47 1 3.2071 -1.5460 3.3482 48 1 5.9004 -0.6402 6.8538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182896978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:10 Heat of formation + Delta-G solvation = -33.404738 kcal Electronic energy + Delta-G solvation = -28863.604979 eV Core-core repulsion = 24918.847280 eV Total energy + Delta-G solvation = -3944.757699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87462 -41.32521 -39.84328 -38.72126 -36.68337 -34.77902 -33.45075 -33.41464 -31.70867 -31.38387 -30.02267 -28.22967 -27.02789 -26.65637 -24.91041 -24.59612 -23.87984 -22.44782 -20.66908 -20.20851 -19.52530 -19.35835 -18.06969 -17.81859 -17.67216 -17.35247 -16.67265 -16.61879 -16.41191 -16.17878 -15.41312 -15.33980 -15.29373 -14.97820 -14.70876 -14.59198 -14.39456 -14.20983 -13.95303 -13.79148 -13.56546 -13.16701 -13.14830 -13.03844 -12.93096 -12.69751 -12.63925 -12.53086 -12.27287 -12.13426 -11.91197 -11.64193 -11.35434 -11.19624 -11.08709 -11.03589 -10.73189 -10.47787 -9.84767 -9.53664 -9.33948 -8.08304 -5.40850 0.10562 0.23834 1.28539 1.29187 1.35774 1.40350 1.40812 2.38359 2.42432 2.78899 3.20050 3.23650 3.45927 3.50409 3.55762 3.65686 3.72868 3.89296 3.90462 3.97355 3.98985 4.08350 4.18469 4.30289 4.35696 4.41772 4.55261 4.59644 4.64877 4.68947 4.75655 4.84226 4.88382 4.95559 4.98618 5.00936 5.10938 5.12476 5.18804 5.30674 5.39425 5.45177 5.52171 5.66388 5.69735 6.08156 6.16010 6.43048 6.92240 6.97216 7.02870 7.79120 7.97706 9.13650 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002865 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.320212 B = 9771.041033 C =11130.337499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.081 0.919 4 C 0.099 3.901 5 N -0.616 5.616 6 C 0.524 3.476 7 O -0.581 6.581 8 C 0.050 3.950 9 O -0.316 6.316 10 C 0.061 3.939 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.054 3.946 14 N -0.472 5.472 15 C 0.011 3.989 16 C 0.110 3.890 17 C -0.073 4.073 18 C -0.133 4.133 19 C 0.171 3.829 20 N -0.754 5.754 21 C -0.233 4.233 22 H 0.053 0.947 23 C -0.064 4.064 24 N -0.984 5.984 25 Si 0.949 3.051 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.243 1.243 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.175 0.825 38 H 0.187 0.813 39 H 0.181 0.819 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.003 0.997 46 H 0.031 0.969 47 H 0.366 0.634 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -1.874 -29.752 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.099 0.901 4 C -0.021 4.021 5 N -0.350 5.350 6 C 0.313 3.687 7 O -0.460 6.460 8 C -0.027 4.027 9 O -0.228 6.228 10 C 0.014 3.986 11 C -0.151 4.151 12 C -0.141 4.141 13 C -0.104 4.104 14 N -0.182 5.182 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.074 4.074 18 C -0.190 4.190 19 C 0.045 3.955 20 N -0.400 5.400 21 C -0.364 4.364 22 H 0.071 0.929 23 C -0.255 4.255 24 N -0.634 5.634 25 Si 0.776 3.224 26 H -0.215 1.215 27 H -0.215 1.215 28 H -0.167 1.167 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.162 0.838 37 H 0.192 0.808 38 H 0.204 0.796 39 H 0.198 0.802 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.051 0.949 44 H 0.090 0.910 45 H 0.021 0.979 46 H 0.048 0.952 47 H 0.200 0.800 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.654 -1.675 -29.777 31.670 hybrid contribution 1.228 -1.248 1.790 2.504 sum -9.425 -2.922 -27.987 29.676 Atomic orbital electron populations 1.21877 0.91390 1.03276 1.02917 1.22141 0.98153 0.99096 0.91683 0.90098 1.22987 0.85570 0.96444 0.97142 1.48868 1.13112 1.55482 1.17544 1.20316 0.80703 0.79837 0.87862 1.90775 1.42900 1.43629 1.68715 1.22622 0.84550 1.03137 0.92403 1.86145 1.33000 1.74266 1.29384 1.20361 0.96193 0.96985 0.85054 1.21318 0.94746 1.01854 0.97180 1.22382 1.02379 0.96505 0.92846 1.23247 0.88552 0.97021 1.01569 1.67582 1.20522 1.18266 1.11829 1.23225 1.00754 0.99121 0.91490 1.22601 0.98488 0.97458 0.82762 1.21761 0.95231 0.94659 0.95789 1.21911 0.96510 1.01799 0.98801 1.20788 0.94122 0.93818 0.86792 1.42736 1.57850 1.12259 1.27145 1.19014 1.19538 0.96274 1.01595 0.92936 1.25497 1.00092 1.02638 0.97320 1.69879 1.39360 1.38358 1.15840 0.85497 0.79388 0.80477 0.77027 1.21502 1.21531 1.16729 0.90851 0.92361 0.90333 0.87147 0.87298 0.84845 0.86063 0.83845 0.80793 0.79622 0.80238 0.88711 0.93803 0.89069 0.94894 0.90957 0.97932 0.95152 0.80002 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.93 71.98 0.57 -0.87 16 2 C -0.09 -1.49 3.31 -9.89 -0.03 -1.53 16 3 H 0.08 1.44 7.71 -2.39 -0.02 1.43 16 4 C 0.10 1.26 6.46 86.53 0.56 1.82 16 5 N -0.62 -14.95 3.31 -807.18 -2.67 -17.63 16 6 C 0.52 15.45 7.99 87.66 0.70 16.15 16 7 O -0.58 -24.88 16.76 16.00 0.27 -24.61 16 8 C 0.05 0.95 4.21 71.24 0.30 1.25 16 9 O -0.32 -8.20 9.68 -73.50 -0.71 -8.91 16 10 C 0.06 1.29 6.71 22.60 0.15 1.44 16 11 C -0.12 -2.32 10.13 22.56 0.23 -2.09 16 12 C -0.12 -1.57 10.11 22.34 0.23 -1.35 16 13 C 0.05 0.74 11.18 84.70 0.95 1.69 16 14 N -0.47 -8.62 10.35 -195.44 -2.02 -10.64 16 15 C 0.01 0.20 10.22 84.80 0.87 1.06 16 16 C 0.11 3.17 5.93 86.67 0.51 3.69 16 17 C -0.07 -1.91 0.74 -51.14 -0.04 -1.95 16 18 C -0.13 -3.07 7.11 71.98 0.51 -2.56 16 19 C 0.17 6.59 4.96 86.38 0.43 7.02 16 20 N -0.75 -36.71 4.60 -343.44 -1.58 -38.29 16 21 C -0.23 -14.03 10.47 84.03 0.88 -13.15 16 22 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 23 C -0.06 -3.97 5.50 84.86 0.47 -3.51 16 24 N -0.98 -65.80 13.97 21.65 0.30 -65.50 16 25 Si 0.95 47.79 27.74 68.60 1.90 49.69 16 26 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 27 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.24 -10.75 6.52 99.48 0.65 -10.10 16 29 H 0.07 0.63 6.61 -2.39 -0.02 0.62 16 30 H 0.06 0.74 6.98 -2.39 -0.02 0.72 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.72 7.31 -2.39 -0.02 0.70 16 33 H 0.11 0.80 7.86 -2.39 -0.02 0.78 16 34 H 0.13 1.40 7.67 -2.38 -0.02 1.38 16 35 H 0.12 1.62 7.51 -2.39 -0.02 1.60 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.18 1.99 6.32 -2.91 -0.02 1.97 16 40 H 0.09 2.25 7.84 -2.39 -0.02 2.23 16 41 H 0.04 1.74 6.96 -2.39 -0.02 1.73 16 42 H 0.09 1.45 6.67 -2.39 -0.02 1.43 16 43 H 0.03 0.95 6.74 -2.39 -0.02 0.93 16 44 H 0.07 1.57 6.89 -2.39 -0.02 1.56 16 45 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.37 17.03 3.85 -92.72 -0.36 16.67 16 48 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -90.48 381.99 3.32 -87.16 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.56 Total: 21.60 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 7.28 Total: 7.12 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -5.98 Total: -132.05 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.44 Total: -33.52 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.90 Total: 49.69 kcal Total: -90.48 3.32 -87.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182896978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.753 kcal (2) G-P(sol) polarization free energy of solvation -90.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds