Wall clock time and date at job start Tue Mar 31 2020 17:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.30272 * 2 1 4 4 C 1.54790 * 110.52395 * 237.76888 * 2 1 3 5 5 N 1.48146 * 104.41810 * 265.22424 * 4 2 1 6 6 C 1.34778 * 127.83596 * 140.37023 * 5 4 2 7 7 O 1.21606 * 119.99921 * 185.25500 * 6 5 4 8 8 C 1.47400 * 120.00030 * 5.25813 * 6 5 4 9 9 C 1.47101 * 128.56444 * 24.29391 * 8 6 5 10 10 N 1.30009 * 105.32587 * 180.02562 * 9 8 6 11 11 O 1.20657 * 112.30861 * 0.02562 * 10 9 8 12 12 C 1.33498 * 113.15163 * 359.97438 * 11 10 9 13 13 C 1.50698 * 126.82670 * 180.25853 * 12 11 10 14 14 C 1.52993 * 117.49909 * 8.44172 * 13 12 11 15 15 C 1.52999 * 117.50088 * 299.77709 * 13 12 11 16 16 C 1.48148 * 104.32179 * 320.10538 * 5 4 2 17 17 C 1.54288 * 110.34177 * 122.17544 * 2 1 3 18 18 C 1.52999 * 110.34384 * 359.97438 * 17 2 1 19 19 C 1.53005 * 110.34206 * 237.73912 * 17 2 1 20 20 N 1.46498 * 109.47024 * 183.00709 * 19 17 2 21 21 C 1.36935 * 119.99754 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00347 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99929 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00039 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00101 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47039 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47203 * 119.99758 * 25 23 21 28 28 H 1.48506 * 109.46840 * 239.99566 * 25 23 21 29 29 H 1.09005 * 109.47230 * 297.82378 * 1 2 3 30 30 H 1.08998 * 109.47450 * 57.82492 * 1 2 3 31 31 H 1.08998 * 109.47156 * 177.82688 * 1 2 3 32 32 H 1.09002 * 110.53745 * 146.48837 * 4 2 1 33 33 H 1.09001 * 110.46401 * 23.92824 * 4 2 1 34 34 H 1.08001 * 127.33797 * 0.05990 * 9 8 6 35 35 H 1.09006 * 115.54378 * 154.11093 * 13 12 11 36 36 H 1.08999 * 117.50310 * 359.97438 * 14 13 12 37 37 H 1.09005 * 117.50146 * 145.02239 * 14 13 12 38 38 H 1.08998 * 117.50076 * 214.97936 * 15 13 12 39 39 H 1.08997 * 117.50149 * 359.97438 * 15 13 12 40 40 H 1.09008 * 110.40299 * 158.62758 * 16 5 4 41 41 H 1.09000 * 110.41251 * 280.94135 * 16 5 4 42 42 H 1.08999 * 109.46864 * 176.99050 * 18 17 2 43 43 H 1.09001 * 109.47296 * 296.99274 * 18 17 2 44 44 H 1.09002 * 109.46965 * 56.99251 * 18 17 2 45 45 H 1.08999 * 109.47329 * 303.01366 * 19 17 2 46 46 H 1.09006 * 109.47091 * 63.00903 * 19 17 2 47 47 H 0.96996 * 120.00252 * 0.02562 * 20 19 17 48 48 H 0.96999 * 120.00024 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0727 -0.7731 -1.2263 5 7 2.3139 -2.1445 -0.7205 6 6 2.0773 -3.3119 -1.3513 7 8 2.2407 -4.3642 -0.7642 8 6 1.6206 -3.3129 -2.7527 9 6 1.8111 -2.2775 -3.7801 10 7 1.2288 -2.7402 -4.8464 11 8 0.7362 -3.8265 -4.6645 12 6 0.9112 -4.2806 -3.4214 13 6 0.4310 -5.5959 -2.8642 14 6 -0.1630 -6.6054 -3.8485 15 6 -1.0762 -5.8588 -2.8728 16 6 2.8802 -1.9415 0.6333 17 6 2.0663 -0.7704 1.2245 18 6 0.9061 -1.3010 2.0691 19 6 2.9692 0.1327 2.0673 20 7 3.5244 -0.6368 3.1835 21 6 4.3668 -0.0337 4.0788 22 1 4.6223 1.0091 3.9620 23 6 4.8934 -0.7630 5.1361 24 7 4.5825 -2.0340 5.2783 25 14 6.0420 0.0600 6.3580 26 1 6.2307 1.4832 5.9788 27 1 5.4536 -0.0162 7.7193 28 1 7.3554 -0.6332 6.3469 29 1 -0.3634 0.4797 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 3.0038 -0.3283 -1.5774 33 1 1.3321 -0.7877 -2.0259 34 1 2.3257 -1.3342 -3.6719 35 1 1.0058 -5.9890 -2.0255 36 1 -0.2070 -6.3180 -4.8990 37 1 0.0204 -7.6627 -3.6573 38 1 -1.4930 -6.4253 -2.0400 39 1 -1.7206 -5.0803 -3.2810 40 1 2.7494 -2.8388 1.2384 41 1 3.9360 -1.6785 0.5683 42 1 1.2996 -1.8872 2.8995 43 1 0.3269 -0.4634 2.4578 44 1 0.2653 -1.9303 1.4515 45 1 3.7818 0.5134 1.4486 46 1 2.3866 0.9679 2.4561 47 1 3.2953 -1.5735 3.2883 48 1 4.9501 -2.5434 6.0173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183061095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:50 Heat of formation + Delta-G solvation = 72.044608 kcal Electronic energy + Delta-G solvation = -29481.774332 eV Core-core repulsion = 25541.589260 eV Total energy + Delta-G solvation = -3940.185072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.17237 -40.31871 -38.34404 -37.59516 -34.90168 -33.97996 -33.04527 -31.82579 -31.51606 -29.66093 -27.67629 -26.16433 -25.56864 -24.48805 -24.09110 -23.11991 -22.76447 -21.34857 -21.22605 -19.41253 -18.57722 -17.97539 -17.83087 -17.10700 -16.78058 -16.04507 -15.76485 -15.74882 -14.58905 -14.46878 -14.30551 -14.13141 -14.07396 -13.86233 -13.44804 -13.09449 -12.98209 -12.65797 -12.56688 -12.29589 -12.02015 -11.97832 -11.85082 -11.53855 -11.51652 -11.29958 -11.28252 -11.01397 -10.84031 -10.83499 -10.65105 -10.42605 -10.36153 -10.19193 -10.02973 -9.88896 -9.63069 -9.46612 -8.89070 -8.63939 -6.92461 -5.76368 -3.05316 0.82436 1.55116 2.44628 2.88093 3.04307 3.43274 3.45796 3.48770 3.51166 3.90832 3.96018 4.29063 4.40425 4.48595 4.52772 4.55717 4.61576 4.83805 4.86284 4.98397 5.19274 5.24866 5.28484 5.36197 5.40912 5.45415 5.48293 5.51193 5.55955 5.62952 5.69781 5.75824 5.77104 5.87946 5.97235 6.04520 6.07718 6.14450 6.20569 6.24398 6.42369 6.56626 6.65841 6.75091 6.84484 7.53744 7.70207 7.88170 8.10604 8.42063 9.53629 10.10693 10.45098 11.46282 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.002766 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.880439 B =10120.780232 C =10685.337714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.089 0.911 4 C 0.098 3.902 5 N -0.610 5.610 6 C 0.616 3.384 7 O -0.531 6.531 8 C -0.246 4.246 9 C 0.023 3.977 10 N -0.355 5.355 11 O 0.091 5.909 12 C 0.074 3.926 13 C -0.093 4.093 14 C -0.164 4.164 15 C -0.157 4.157 16 C 0.122 3.878 17 C -0.074 4.074 18 C -0.131 4.131 19 C 0.168 3.832 20 N -0.731 5.731 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.202 0.798 35 H 0.155 0.845 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -2.429 -20.263 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.025 4.025 5 N -0.343 5.343 6 C 0.404 3.596 7 O -0.409 6.409 8 C -0.253 4.253 9 C -0.160 4.160 10 N -0.060 5.060 11 O 0.031 5.969 12 C 0.010 3.990 13 C -0.112 4.112 14 C -0.201 4.201 15 C -0.194 4.194 16 C 0.000 4.000 17 C -0.076 4.076 18 C -0.189 4.189 19 C 0.040 3.960 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.219 0.781 35 H 0.172 0.828 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.069 -2.524 -21.167 24.496 hybrid contribution 1.029 0.358 1.527 1.876 sum -11.040 -2.165 -19.640 22.634 Atomic orbital electron populations 1.21902 0.94518 1.01851 1.01620 1.22201 0.96255 0.99513 0.93634 0.89242 1.22769 1.00550 0.81929 0.97297 1.48741 1.62527 1.04853 1.18208 1.16267 0.77368 0.82673 0.83277 1.90812 1.53126 1.30306 1.66607 1.21971 1.09987 0.96325 0.97056 1.26493 1.00573 1.01157 0.87731 1.73664 1.12936 0.95898 1.23523 1.84534 1.58074 1.25788 1.28494 1.23698 0.95697 0.95719 0.83868 1.20785 0.98150 0.89334 1.02965 1.23121 1.02456 0.97806 0.96726 1.23128 0.90565 1.03182 1.02563 1.22540 0.97266 0.99215 0.80960 1.21706 0.96261 0.95108 0.94496 1.21860 0.96805 1.00770 0.99419 1.20715 0.93302 0.92836 0.89118 1.42395 1.55864 1.11096 1.28199 1.19241 1.19487 0.94708 1.03663 0.91192 1.24734 1.01040 0.95907 0.99200 1.69665 1.48414 1.07045 1.32820 0.86144 0.80517 0.78344 0.81323 1.20615 1.21910 1.21911 0.91724 0.93238 0.92467 0.90652 0.90400 0.78141 0.82792 0.87766 0.87278 0.87128 0.88178 0.89356 0.90059 0.91525 0.92459 0.93316 0.96190 0.95923 0.78056 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 7.94 37.16 0.30 -1.17 16 2 C -0.10 -1.10 3.31 -89.00 -0.29 -1.39 16 3 H 0.09 0.94 7.71 -51.93 -0.40 0.54 16 4 C 0.10 1.03 5.31 -2.19 -0.01 1.02 16 5 N -0.61 -8.42 3.31 -170.32 -0.56 -8.99 16 6 C 0.62 9.22 7.85 -12.53 -0.10 9.12 16 7 O -0.53 -9.62 15.85 5.27 0.08 -9.53 16 8 C -0.25 -3.06 6.07 -102.89 -0.62 -3.69 16 9 C 0.02 0.24 10.51 -14.73 -0.15 0.09 16 10 N -0.35 -4.11 12.01 31.81 0.38 -3.72 16 11 O 0.09 1.02 10.86 18.64 0.20 1.22 16 12 C 0.07 0.84 7.00 -34.63 -0.24 0.60 16 13 C -0.09 -0.90 5.94 -91.78 -0.54 -1.45 16 14 C -0.16 -1.13 10.19 -26.69 -0.27 -1.40 16 15 C -0.16 -1.15 10.24 -26.69 -0.27 -1.42 16 16 C 0.12 1.97 5.56 -2.41 -0.01 1.96 16 17 C -0.07 -1.12 0.73 -153.11 -0.11 -1.23 16 18 C -0.13 -2.04 7.08 37.16 0.26 -1.78 16 19 C 0.17 3.14 4.85 -4.04 -0.02 3.12 16 20 N -0.73 -17.67 5.12 -59.90 -0.31 -17.97 16 21 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 25 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H 0.06 0.68 6.88 -51.93 -0.36 0.33 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.64 6.72 -51.93 -0.35 0.30 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.70 5.68 -51.93 -0.30 0.40 16 34 H 0.20 1.56 6.79 -52.49 -0.36 1.20 16 35 H 0.15 1.72 6.96 -51.93 -0.36 1.36 16 36 H 0.10 0.67 8.02 -51.93 -0.42 0.25 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.65 7.56 -51.92 -0.39 1.26 16 41 H 0.08 1.41 7.87 -51.93 -0.41 1.00 16 42 H 0.07 1.22 7.01 -51.93 -0.36 0.86 16 43 H 0.06 0.84 6.98 -51.93 -0.36 0.48 16 44 H 0.05 0.70 6.61 -51.93 -0.34 0.36 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.38 9.87 6.28 -40.82 -0.26 9.62 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -32.24 383.38 -8.24 -40.49 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.17 Total: 7.49 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.35 Total: -4.78 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.24 Total: -57.88 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.29 Total: -8.31 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.24 -8.24 -40.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183061095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.532 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds