Wall clock time and date at job start Tue Mar 31 2020 17:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.30272 * 2 1 4 4 C 1.54790 * 110.52395 * 237.76888 * 2 1 3 5 5 N 1.48146 * 104.41810 * 265.22424 * 4 2 1 6 6 C 1.34778 * 127.83596 * 140.37023 * 5 4 2 7 7 O 1.21606 * 119.99921 * 185.25500 * 6 5 4 8 8 C 1.47400 * 120.00030 * 5.25813 * 6 5 4 9 9 C 1.47101 * 128.56444 * 24.29391 * 8 6 5 10 10 N 1.30009 * 105.32587 * 180.02562 * 9 8 6 11 11 O 1.20657 * 112.30861 * 0.02562 * 10 9 8 12 12 C 1.33498 * 113.15163 * 359.97438 * 11 10 9 13 13 C 1.50698 * 126.82670 * 180.25853 * 12 11 10 14 14 C 1.52993 * 117.49909 * 8.44172 * 13 12 11 15 15 C 1.52999 * 117.50088 * 299.77709 * 13 12 11 16 16 C 1.48148 * 104.32179 * 320.10538 * 5 4 2 17 17 C 1.54288 * 110.34177 * 122.17544 * 2 1 3 18 18 C 1.52999 * 110.34384 * 359.97438 * 17 2 1 19 19 C 1.53005 * 110.34206 * 237.73912 * 17 2 1 20 20 N 1.46498 * 109.47024 * 183.00709 * 19 17 2 21 21 C 1.36935 * 119.99754 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00347 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99929 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00039 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00101 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47039 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47203 * 119.99758 * 25 23 21 28 28 H 1.48506 * 109.46840 * 239.99566 * 25 23 21 29 29 H 1.09005 * 109.47230 * 297.82378 * 1 2 3 30 30 H 1.08998 * 109.47450 * 57.82492 * 1 2 3 31 31 H 1.08998 * 109.47156 * 177.82688 * 1 2 3 32 32 H 1.09002 * 110.53745 * 146.48837 * 4 2 1 33 33 H 1.09001 * 110.46401 * 23.92824 * 4 2 1 34 34 H 1.08001 * 127.33797 * 0.05990 * 9 8 6 35 35 H 1.09006 * 115.54378 * 154.11093 * 13 12 11 36 36 H 1.08999 * 117.50310 * 359.97438 * 14 13 12 37 37 H 1.09005 * 117.50146 * 145.02239 * 14 13 12 38 38 H 1.08998 * 117.50076 * 214.97936 * 15 13 12 39 39 H 1.08997 * 117.50149 * 359.97438 * 15 13 12 40 40 H 1.09008 * 110.40299 * 158.62758 * 16 5 4 41 41 H 1.09000 * 110.41251 * 280.94135 * 16 5 4 42 42 H 1.08999 * 109.46864 * 176.99050 * 18 17 2 43 43 H 1.09001 * 109.47296 * 296.99274 * 18 17 2 44 44 H 1.09002 * 109.46965 * 56.99251 * 18 17 2 45 45 H 1.08999 * 109.47329 * 303.01366 * 19 17 2 46 46 H 1.09006 * 109.47091 * 63.00903 * 19 17 2 47 47 H 0.96996 * 120.00252 * 0.02562 * 20 19 17 48 48 H 0.96999 * 120.00024 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0727 -0.7731 -1.2263 5 7 2.3139 -2.1445 -0.7205 6 6 2.0773 -3.3119 -1.3513 7 8 2.2407 -4.3642 -0.7642 8 6 1.6206 -3.3129 -2.7527 9 6 1.8111 -2.2775 -3.7801 10 7 1.2288 -2.7402 -4.8464 11 8 0.7362 -3.8265 -4.6645 12 6 0.9112 -4.2806 -3.4214 13 6 0.4310 -5.5959 -2.8642 14 6 -0.1630 -6.6054 -3.8485 15 6 -1.0762 -5.8588 -2.8728 16 6 2.8802 -1.9415 0.6333 17 6 2.0663 -0.7704 1.2245 18 6 0.9061 -1.3010 2.0691 19 6 2.9692 0.1327 2.0673 20 7 3.5244 -0.6368 3.1835 21 6 4.3668 -0.0337 4.0788 22 1 4.6223 1.0091 3.9620 23 6 4.8934 -0.7630 5.1361 24 7 4.5825 -2.0340 5.2783 25 14 6.0420 0.0600 6.3580 26 1 6.2307 1.4832 5.9788 27 1 5.4536 -0.0162 7.7193 28 1 7.3554 -0.6332 6.3469 29 1 -0.3634 0.4797 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 3.0038 -0.3283 -1.5774 33 1 1.3321 -0.7877 -2.0259 34 1 2.3257 -1.3342 -3.6719 35 1 1.0058 -5.9890 -2.0255 36 1 -0.2070 -6.3180 -4.8990 37 1 0.0204 -7.6627 -3.6573 38 1 -1.4930 -6.4253 -2.0400 39 1 -1.7206 -5.0803 -3.2810 40 1 2.7494 -2.8388 1.2384 41 1 3.9360 -1.6785 0.5683 42 1 1.2996 -1.8872 2.8995 43 1 0.3269 -0.4634 2.4578 44 1 0.2653 -1.9303 1.4515 45 1 3.7818 0.5134 1.4486 46 1 2.3866 0.9679 2.4561 47 1 3.2953 -1.5735 3.2883 48 1 4.9501 -2.5434 6.0173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183061095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:46 Heat of formation + Delta-G solvation = 52.670827 kcal Electronic energy + Delta-G solvation = -29482.614442 eV Core-core repulsion = 25541.589260 eV Total energy + Delta-G solvation = -3941.025183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -46.02816 -41.47722 -39.51749 -38.30657 -36.51478 -35.07922 -34.32249 -33.06700 -32.67668 -31.21753 -28.82033 -27.60988 -26.72342 -25.63858 -25.08203 -24.60618 -23.34034 -22.47873 -22.21439 -20.44257 -19.83777 -19.26014 -18.83046 -18.43010 -17.78273 -17.22225 -16.90769 -16.59943 -16.40828 -15.64143 -15.46394 -15.30588 -15.25403 -14.79747 -14.74042 -14.69928 -14.34830 -13.86382 -13.52409 -13.42041 -13.13101 -13.03892 -12.87534 -12.73132 -12.61157 -12.50012 -12.44943 -12.41870 -12.21598 -12.03807 -11.95950 -11.58308 -11.51299 -11.47526 -11.38611 -11.20601 -11.16803 -10.92390 -10.33053 -9.78239 -8.95385 -7.92108 -5.20168 -0.08560 0.69293 1.48183 1.48567 1.50998 1.58596 1.83067 1.99138 2.57560 2.79659 3.09367 3.16506 3.36284 3.42176 3.49063 3.54719 3.72547 3.80277 3.88517 3.95685 4.14267 4.19469 4.24285 4.28488 4.33835 4.46869 4.51993 4.60809 4.67473 4.71521 4.74592 4.77124 4.83113 4.87295 4.92239 5.01748 5.03849 5.06550 5.07286 5.14899 5.17463 5.25428 5.36959 5.43629 5.53453 5.58336 6.29798 6.43867 6.93951 7.04114 7.36524 8.13917 8.35302 9.31687 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.002766 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.880439 B =10120.780232 C =10685.337714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.110 0.890 4 C 0.096 3.904 5 N -0.607 5.607 6 C 0.613 3.387 7 O -0.576 6.576 8 C -0.271 4.271 9 C 0.040 3.960 10 N -0.367 5.367 11 O 0.090 5.910 12 C 0.086 3.914 13 C -0.124 4.124 14 C -0.145 4.145 15 C -0.147 4.147 16 C 0.127 3.873 17 C -0.066 4.066 18 C -0.123 4.123 19 C 0.167 3.833 20 N -0.744 5.744 21 C -0.237 4.237 22 H 0.079 0.921 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.970 3.030 26 H -0.263 1.263 27 H -0.296 1.296 28 H -0.297 1.297 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.231 0.769 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.027 0.973 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.029 0.971 46 H 0.030 0.970 47 H 0.373 0.627 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -0.330 -22.642 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.128 0.872 4 C -0.025 4.025 5 N -0.339 5.339 6 C 0.403 3.597 7 O -0.457 6.457 8 C -0.279 4.279 9 C -0.142 4.142 10 N -0.075 5.075 11 O 0.033 5.967 12 C 0.022 3.978 13 C -0.144 4.144 14 C -0.181 4.181 15 C -0.184 4.184 16 C 0.004 3.996 17 C -0.067 4.067 18 C -0.180 4.180 19 C 0.041 3.959 20 N -0.387 5.387 21 C -0.369 4.369 22 H 0.097 0.903 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.188 1.188 27 H -0.223 1.223 28 H -0.225 1.225 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.247 0.753 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.206 0.794 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.117 -0.365 -23.600 27.003 hybrid contribution 1.307 -0.303 2.214 2.589 sum -11.810 -0.668 -21.386 24.440 Atomic orbital electron populations 1.21876 0.93349 1.01511 1.02840 1.22218 0.97155 0.99911 0.91503 0.87212 1.23061 1.02466 0.79583 0.97438 1.48738 1.61822 1.06175 1.17160 1.16626 0.76697 0.82225 0.84141 1.90786 1.55098 1.31951 1.67860 1.21757 1.11951 0.98057 0.96103 1.26864 0.99516 1.01406 0.86429 1.73658 1.13730 0.96183 1.23896 1.84538 1.58217 1.25887 1.28084 1.23970 0.94373 0.95731 0.83711 1.20770 0.99761 0.89894 1.03925 1.23253 1.00304 0.97953 0.96615 1.23245 0.88897 1.03236 1.03007 1.22247 0.96986 0.98112 0.82214 1.21573 0.95178 0.94504 0.95479 1.21766 0.97086 1.00728 0.98390 1.20900 0.93955 0.93038 0.88022 1.42629 1.55717 1.11004 1.29318 1.19677 1.18649 0.95012 1.03563 0.90317 1.25544 1.03395 0.96548 1.01536 1.69836 1.50250 1.08607 1.33541 0.85108 0.78037 0.78144 0.78688 1.18753 1.22340 1.22468 0.91940 0.90510 0.93704 0.88345 0.87932 0.75254 0.84965 0.86897 0.85765 0.86190 0.87519 0.93105 0.91416 0.95340 0.91361 0.92413 0.95263 0.95236 0.79432 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.94 71.98 0.57 -1.85 16 2 C -0.09 -1.76 3.31 -9.75 -0.03 -1.79 16 3 H 0.11 1.83 7.71 -2.39 -0.02 1.82 16 4 C 0.10 1.72 5.31 86.67 0.46 2.18 16 5 N -0.61 -16.49 3.31 -811.04 -2.69 -19.18 16 6 C 0.61 18.61 7.85 86.66 0.68 19.29 16 7 O -0.58 -22.16 15.85 -4.05 -0.06 -22.22 16 8 C -0.27 -6.51 6.07 -18.75 -0.11 -6.62 16 9 C 0.04 0.75 10.51 87.29 0.92 1.67 16 10 N -0.37 -7.66 12.01 -54.19 -0.65 -8.31 16 11 O 0.09 1.86 10.86 76.94 0.84 2.69 16 12 C 0.09 1.89 7.00 25.48 0.18 2.07 16 13 C -0.12 -2.38 5.94 -11.54 -0.07 -2.45 16 14 C -0.14 -1.75 10.19 30.62 0.31 -1.44 16 15 C -0.15 -1.95 10.24 30.62 0.31 -1.64 16 16 C 0.13 4.26 5.56 86.53 0.48 4.74 16 17 C -0.07 -1.96 0.73 -51.27 -0.04 -2.00 16 18 C -0.12 -3.87 7.08 71.98 0.51 -3.36 16 19 C 0.17 6.13 4.85 86.38 0.42 6.55 16 20 N -0.74 -36.68 5.12 -343.44 -1.76 -38.44 16 21 C -0.24 -12.99 9.99 84.03 0.84 -12.15 16 22 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 23 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 24 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 25 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 29 H 0.06 1.14 6.88 -2.38 -0.02 1.12 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.90 6.72 -2.39 -0.02 0.89 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.39 5.68 -2.39 -0.01 1.38 16 34 H 0.23 2.62 6.79 -2.91 -0.02 2.60 16 35 H 0.13 3.16 6.96 -2.38 -0.02 3.15 16 36 H 0.11 1.20 8.02 -2.39 -0.02 1.18 16 37 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 2.07 7.56 -2.38 -0.02 2.05 16 41 H 0.07 2.43 7.87 -2.39 -0.02 2.41 16 42 H 0.03 1.10 7.01 -2.39 -0.02 1.08 16 43 H 0.07 1.97 6.98 -2.39 -0.02 1.95 16 44 H 0.06 1.69 6.61 -2.39 -0.02 1.68 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.37 20.10 6.28 -92.71 -0.58 19.52 16 48 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -72.99 383.38 4.29 -68.71 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.40 Total: 29.26 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.90 Total: -0.83 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -4.81 Total: -125.92 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.77 Total: -19.53 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -72.99 4.29 -68.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183061095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.377 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds