Wall clock time and date at job start Tue Mar 31 2020 17:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.30198 * 2 1 4 4 C 1.54386 * 110.43319 * 237.76596 * 2 1 3 5 5 N 1.48146 * 104.61890 * 264.94845 * 4 2 1 6 6 C 1.34776 * 127.83916 * 140.43467 * 5 4 2 7 7 O 1.21616 * 119.99433 * 180.02562 * 6 5 4 8 8 C 1.47418 * 120.00003 * 0.02562 * 6 5 4 9 9 N 1.36060 * 126.44923 * 359.69263 * 8 6 5 10 10 C 1.29932 * 108.47733 * 179.85957 * 9 8 6 11 11 O 1.34054 * 109.24314 * 0.40589 * 10 9 8 12 12 C 1.34258 * 108.22272 * 359.74681 * 11 10 9 13 13 C 1.50697 * 126.51991 * 180.02562 * 12 11 10 14 14 C 1.53004 * 117.50196 * 8.70355 * 13 12 11 15 15 C 1.52993 * 117.50040 * 300.04044 * 13 12 11 16 16 C 1.48152 * 104.32191 * 320.41410 * 5 4 2 17 17 C 1.54286 * 110.34500 * 122.17143 * 2 1 3 18 18 C 1.52994 * 110.34237 * 0.02562 * 17 2 1 19 19 C 1.53000 * 110.34248 * 237.84671 * 17 2 1 20 20 N 1.46499 * 109.46840 * 179.97438 * 19 17 2 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47261 * 59.99582 * 25 23 21 27 27 H 1.48502 * 109.47375 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46897 * 300.00142 * 25 23 21 29 29 H 1.09004 * 109.47334 * 297.82410 * 1 2 3 30 30 H 1.08998 * 109.47600 * 57.82764 * 1 2 3 31 31 H 1.09001 * 109.47098 * 177.82643 * 1 2 3 32 32 H 1.09000 * 110.40846 * 23.73133 * 4 2 1 33 33 H 1.09005 * 110.40942 * 146.04442 * 4 2 1 34 34 H 1.08006 * 125.37892 * 180.11830 * 10 9 8 35 35 H 1.09005 * 115.54887 * 154.37115 * 13 12 11 36 36 H 1.08998 * 117.49688 * 359.97438 * 14 13 12 37 37 H 1.08998 * 117.49979 * 145.02283 * 14 13 12 38 38 H 1.09004 * 117.50144 * 214.98067 * 15 13 12 39 39 H 1.08999 * 117.50038 * 359.97438 * 15 13 12 40 40 H 1.09001 * 110.40521 * 280.80462 * 16 5 4 41 41 H 1.08994 * 110.41051 * 158.36695 * 16 5 4 42 42 H 1.08996 * 109.47469 * 298.52526 * 18 17 2 43 43 H 1.09004 * 109.47256 * 58.52617 * 18 17 2 44 44 H 1.09003 * 109.47302 * 178.52245 * 18 17 2 45 45 H 1.09002 * 109.47398 * 300.00305 * 19 17 2 46 46 H 1.09001 * 109.47194 * 60.00486 * 19 17 2 47 47 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 48 48 H 0.96996 * 120.00586 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2237 5 7 2.3178 -2.1429 -0.7212 6 6 2.0839 -3.3101 -1.3531 7 8 2.3439 -4.3626 -0.8020 8 6 1.5129 -3.3111 -2.7122 9 7 1.1690 -2.2176 -3.4452 10 6 0.7043 -2.6190 -4.5903 11 8 0.7242 -3.9588 -4.6301 12 6 1.2252 -4.4059 -3.4675 13 6 1.4304 -5.8461 -3.0741 14 6 1.2283 -6.9095 -4.1555 15 6 0.1970 -6.7505 -3.0354 16 6 2.8825 -1.9399 0.6333 17 6 2.0664 -0.7703 1.2245 18 6 0.9063 -1.3019 2.0684 19 6 2.9671 0.1336 2.0686 20 7 3.4648 -0.6157 3.2249 21 6 4.2950 -0.0083 4.1287 22 1 4.5827 1.0234 3.9893 23 6 4.7670 -0.7184 5.2241 24 7 4.4161 -1.9754 5.3943 25 14 5.8990 0.1105 6.4574 26 1 5.2061 1.2783 7.0584 27 1 6.2583 -0.8555 7.5266 28 1 7.1322 0.5677 5.7679 29 1 -0.3634 0.4797 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3253 -0.7880 -2.0205 33 1 2.9957 -0.3212 -1.5792 34 1 0.3529 -1.9751 -5.3830 35 1 2.2088 -6.0245 -2.3321 36 1 0.9464 -6.5675 -5.1513 37 1 1.8733 -7.7876 -4.1246 38 1 0.1640 -7.5242 -2.2683 39 1 -0.7630 -6.3038 -3.2941 40 1 3.9374 -1.6731 0.5692 41 1 2.7526 -2.8376 1.2377 42 1 0.3104 -0.4659 2.4347 43 1 0.2813 -1.9534 1.4576 44 1 1.3005 -1.8652 2.9142 45 1 3.8091 0.4730 1.4654 46 1 2.3962 0.9958 2.4133 47 1 3.2062 -1.5421 3.3504 48 1 4.7456 -2.4716 6.1599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183076513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:57 Heat of formation + Delta-G solvation = 38.077998 kcal Electronic energy + Delta-G solvation = -29466.009106 eV Core-core repulsion = 25524.351131 eV Total energy + Delta-G solvation = -3941.657975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.71657 -40.12825 -38.20304 -37.45594 -35.14315 -34.62993 -32.98065 -31.42168 -30.57419 -29.53712 -27.51106 -25.99131 -25.35744 -24.11908 -23.82248 -22.95981 -22.69492 -21.12634 -21.04679 -19.75496 -18.49298 -17.72706 -17.10912 -16.95811 -16.58808 -15.98560 -15.79577 -15.40251 -15.00975 -14.52806 -14.25239 -13.94639 -13.87693 -13.81605 -13.32380 -13.02012 -12.91808 -12.61212 -12.46945 -12.20236 -11.97647 -11.94465 -11.61481 -11.53639 -11.32742 -11.25013 -11.17527 -10.97194 -10.89087 -10.76928 -10.68440 -10.26416 -10.21146 -10.16017 -9.90030 -9.81874 -9.54122 -9.05733 -8.82668 -8.45148 -6.86729 -5.71116 -2.99721 0.84299 1.84998 2.22202 3.01473 3.24384 3.47457 3.51711 3.52896 3.52913 3.77379 4.07312 4.41779 4.54343 4.57144 4.64298 4.79408 4.84278 4.94518 5.06991 5.24185 5.28412 5.33439 5.44667 5.53451 5.55048 5.60802 5.63032 5.67544 5.72204 5.72341 5.84624 5.93186 5.99327 6.05751 6.12629 6.16341 6.22353 6.27550 6.33397 6.39602 6.52117 6.68187 6.76452 6.84637 6.94504 7.19194 7.70262 7.74028 8.21604 8.47592 9.58723 10.16726 10.51409 11.51576 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.002815 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.019621 B = 9943.360473 C =10890.790927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.097 3.903 5 N -0.601 5.601 6 C 0.616 3.384 7 O -0.536 6.536 8 C -0.057 4.057 9 N -0.457 5.457 10 C 0.170 3.830 11 O -0.200 6.200 12 C 0.071 3.929 13 C -0.085 4.085 14 C -0.169 4.169 15 C -0.157 4.157 16 C 0.121 3.879 17 C -0.075 4.075 18 C -0.131 4.131 19 C 0.168 3.832 20 N -0.730 5.730 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.255 0.745 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 -3.515 -23.988 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.026 4.026 5 N -0.332 5.332 6 C 0.404 3.596 7 O -0.414 6.414 8 C -0.177 4.177 9 N -0.186 5.186 10 C -0.058 4.058 11 O -0.086 6.086 12 C 0.014 3.986 13 C -0.103 4.103 14 C -0.206 4.206 15 C -0.194 4.194 16 C -0.001 4.001 17 C -0.076 4.076 18 C -0.188 4.188 19 C 0.040 3.960 20 N -0.375 5.375 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.270 0.730 35 H 0.174 0.826 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.220 0.780 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.105 -3.436 -23.468 26.189 hybrid contribution 0.529 -0.134 0.427 0.693 sum -10.576 -3.570 -23.041 25.603 Atomic orbital electron populations 1.21865 0.94700 1.01644 1.01300 1.22152 0.96184 0.99461 0.94014 0.89582 1.22817 1.01638 0.80646 0.97497 1.48691 1.61280 1.05419 1.17848 1.16208 0.78112 0.82826 0.82486 1.90801 1.54013 1.30350 1.66191 1.21391 1.09934 0.88346 0.98035 1.70768 1.14109 1.30190 1.03540 1.28066 1.00865 0.78761 0.98086 1.84319 1.63408 1.25054 1.35862 1.22589 0.96650 0.96118 0.83194 1.20804 1.03984 0.81740 1.03740 1.23106 1.02887 1.00012 0.94636 1.23089 0.93378 1.01312 1.01574 1.22538 0.97295 0.99119 0.81137 1.21710 0.96181 0.95121 0.94610 1.21848 0.96851 1.00667 0.99424 1.20710 0.93662 0.92978 0.88602 1.42402 1.57425 1.12932 1.24786 1.19166 1.20528 0.95676 1.01705 0.91314 1.24726 1.01143 0.96083 0.98959 1.69645 1.48994 1.08447 1.31008 0.86283 0.80739 0.78146 0.81086 1.21357 1.21751 1.21345 0.92077 0.93228 0.92703 0.87305 0.91539 0.72982 0.82551 0.88176 0.87445 0.87162 0.88462 0.90285 0.89572 0.92461 0.93481 0.91528 0.96202 0.95957 0.78037 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.93 37.16 0.29 -1.36 16 2 C -0.10 -1.31 3.30 -89.22 -0.29 -1.61 16 3 H 0.09 1.08 7.71 -51.93 -0.40 0.68 16 4 C 0.10 1.29 6.24 -2.41 -0.02 1.27 16 5 N -0.60 -9.56 3.32 -170.57 -0.57 -10.12 16 6 C 0.62 10.20 7.91 -12.52 -0.10 10.11 16 7 O -0.54 -10.12 15.15 5.26 0.08 -10.04 16 8 C -0.06 -0.79 6.86 -83.03 -0.57 -1.36 16 9 N -0.46 -5.23 8.39 -11.48 -0.10 -5.33 16 10 C 0.17 1.34 13.19 51.96 0.69 2.03 16 11 O -0.20 -1.90 10.50 6.50 0.07 -1.83 16 12 C 0.07 0.84 6.90 -35.08 -0.24 0.59 16 13 C -0.08 -0.90 5.61 -91.77 -0.51 -1.41 16 14 C -0.17 -1.29 10.18 -26.69 -0.27 -1.56 16 15 C -0.16 -1.31 10.24 -26.70 -0.27 -1.58 16 16 C 0.12 2.14 5.71 -2.40 -0.01 2.13 16 17 C -0.07 -1.24 0.73 -153.11 -0.11 -1.35 16 18 C -0.13 -2.20 7.07 37.15 0.26 -1.94 16 19 C 0.17 3.36 4.87 -4.04 -0.02 3.34 16 20 N -0.73 -18.37 5.13 -59.91 -0.31 -18.67 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 25 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.06 0.73 6.84 -51.93 -0.36 0.38 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.71 6.76 -51.93 -0.35 0.36 16 32 H 0.11 1.36 5.18 -51.93 -0.27 1.09 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.25 0.58 8.06 -52.48 -0.42 0.16 16 35 H 0.16 1.91 6.66 -51.93 -0.35 1.57 16 36 H 0.10 0.70 8.00 -51.93 -0.42 0.29 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.48 7.83 -51.93 -0.41 1.08 16 41 H 0.09 1.71 7.60 -51.93 -0.39 1.32 16 42 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 43 H 0.05 0.75 6.71 -51.93 -0.35 0.40 16 44 H 0.07 1.30 6.78 -51.93 -0.35 0.95 16 45 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.38 10.23 6.19 -40.82 -0.25 9.97 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -33.68 382.95 -7.95 -41.63 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.17 Total: 8.77 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.43 Total: -0.04 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.24 Total: -61.89 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.15 Total: -11.87 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.68 -7.95 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183076513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.711 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds