Wall clock time and date at job start Tue Mar 31 2020 17:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.30198 * 2 1 4 4 C 1.54386 * 110.43319 * 237.76596 * 2 1 3 5 5 N 1.48146 * 104.61890 * 264.94845 * 4 2 1 6 6 C 1.34776 * 127.83916 * 140.43467 * 5 4 2 7 7 O 1.21616 * 119.99433 * 180.02562 * 6 5 4 8 8 C 1.47418 * 120.00003 * 0.02562 * 6 5 4 9 9 N 1.36060 * 126.44923 * 359.69263 * 8 6 5 10 10 C 1.29932 * 108.47733 * 179.85957 * 9 8 6 11 11 O 1.34054 * 109.24314 * 0.40589 * 10 9 8 12 12 C 1.34258 * 108.22272 * 359.74681 * 11 10 9 13 13 C 1.50697 * 126.51991 * 180.02562 * 12 11 10 14 14 C 1.53004 * 117.50196 * 8.70355 * 13 12 11 15 15 C 1.52993 * 117.50040 * 300.04044 * 13 12 11 16 16 C 1.48152 * 104.32191 * 320.41410 * 5 4 2 17 17 C 1.54286 * 110.34500 * 122.17143 * 2 1 3 18 18 C 1.52994 * 110.34237 * 0.02562 * 17 2 1 19 19 C 1.53000 * 110.34248 * 237.84671 * 17 2 1 20 20 N 1.46499 * 109.46840 * 179.97438 * 19 17 2 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47261 * 59.99582 * 25 23 21 27 27 H 1.48502 * 109.47375 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46897 * 300.00142 * 25 23 21 29 29 H 1.09004 * 109.47334 * 297.82410 * 1 2 3 30 30 H 1.08998 * 109.47600 * 57.82764 * 1 2 3 31 31 H 1.09001 * 109.47098 * 177.82643 * 1 2 3 32 32 H 1.09000 * 110.40846 * 23.73133 * 4 2 1 33 33 H 1.09005 * 110.40942 * 146.04442 * 4 2 1 34 34 H 1.08006 * 125.37892 * 180.11830 * 10 9 8 35 35 H 1.09005 * 115.54887 * 154.37115 * 13 12 11 36 36 H 1.08998 * 117.49688 * 359.97438 * 14 13 12 37 37 H 1.08998 * 117.49979 * 145.02283 * 14 13 12 38 38 H 1.09004 * 117.50144 * 214.98067 * 15 13 12 39 39 H 1.08999 * 117.50038 * 359.97438 * 15 13 12 40 40 H 1.09001 * 110.40521 * 280.80462 * 16 5 4 41 41 H 1.08994 * 110.41051 * 158.36695 * 16 5 4 42 42 H 1.08996 * 109.47469 * 298.52526 * 18 17 2 43 43 H 1.09004 * 109.47256 * 58.52617 * 18 17 2 44 44 H 1.09003 * 109.47302 * 178.52245 * 18 17 2 45 45 H 1.09002 * 109.47398 * 300.00305 * 19 17 2 46 46 H 1.09001 * 109.47194 * 60.00486 * 19 17 2 47 47 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 48 48 H 0.96996 * 120.00586 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2237 5 7 2.3178 -2.1429 -0.7212 6 6 2.0839 -3.3101 -1.3531 7 8 2.3439 -4.3626 -0.8020 8 6 1.5129 -3.3111 -2.7122 9 7 1.1690 -2.2176 -3.4452 10 6 0.7043 -2.6190 -4.5903 11 8 0.7242 -3.9588 -4.6301 12 6 1.2252 -4.4059 -3.4675 13 6 1.4304 -5.8461 -3.0741 14 6 1.2283 -6.9095 -4.1555 15 6 0.1970 -6.7505 -3.0354 16 6 2.8825 -1.9399 0.6333 17 6 2.0664 -0.7703 1.2245 18 6 0.9063 -1.3019 2.0684 19 6 2.9671 0.1336 2.0686 20 7 3.4648 -0.6157 3.2249 21 6 4.2950 -0.0083 4.1287 22 1 4.5827 1.0234 3.9893 23 6 4.7670 -0.7184 5.2241 24 7 4.4161 -1.9754 5.3943 25 14 5.8990 0.1105 6.4574 26 1 5.2061 1.2783 7.0584 27 1 6.2583 -0.8555 7.5266 28 1 7.1322 0.5677 5.7679 29 1 -0.3634 0.4797 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3253 -0.7880 -2.0205 33 1 2.9957 -0.3212 -1.5792 34 1 0.3529 -1.9751 -5.3830 35 1 2.2088 -6.0245 -2.3321 36 1 0.9464 -6.5675 -5.1513 37 1 1.8733 -7.7876 -4.1246 38 1 0.1640 -7.5242 -2.2683 39 1 -0.7630 -6.3038 -3.2941 40 1 3.9374 -1.6731 0.5692 41 1 2.7526 -2.8376 1.2377 42 1 0.3104 -0.4659 2.4347 43 1 0.2813 -1.9534 1.4576 44 1 1.3005 -1.8652 2.9142 45 1 3.8091 0.4730 1.4654 46 1 2.3962 0.9958 2.4133 47 1 3.2062 -1.5421 3.3504 48 1 4.7456 -2.4716 6.1599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183076513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:56 Heat of formation + Delta-G solvation = 15.336835 kcal Electronic energy + Delta-G solvation = -29466.995237 eV Core-core repulsion = 25524.351131 eV Total energy + Delta-G solvation = -3942.644106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.50572 -41.41993 -39.49443 -38.18640 -36.52944 -35.87637 -34.49226 -33.07142 -31.48995 -31.13656 -28.78007 -27.55874 -26.65008 -25.43084 -24.76526 -24.35251 -23.36193 -22.40773 -21.96960 -20.78326 -19.86496 -19.30337 -18.34633 -17.93369 -17.64157 -17.15190 -16.91295 -16.46725 -16.27343 -15.86582 -15.66437 -15.41245 -15.28580 -14.76945 -14.75380 -14.62324 -14.35017 -13.88708 -13.54524 -13.39261 -13.20994 -13.06093 -12.86281 -12.64486 -12.54366 -12.53131 -12.46643 -12.42918 -12.15394 -12.07009 -11.97430 -11.74709 -11.64887 -11.49696 -11.35010 -11.18822 -11.00972 -10.90567 -10.00009 -9.64635 -8.96831 -7.92275 -5.20955 -0.04791 1.04250 1.43004 1.47141 1.50567 1.56581 1.86390 2.14137 2.57346 2.79980 3.01438 3.30228 3.39822 3.44520 3.58198 3.68917 3.79836 3.83107 3.93607 4.08838 4.18840 4.28088 4.29521 4.33087 4.39770 4.54319 4.59207 4.66512 4.66858 4.71666 4.80784 4.82741 4.87668 4.90273 4.99412 5.02549 5.06016 5.08295 5.11941 5.13392 5.23289 5.32091 5.38248 5.45262 5.51728 5.59109 6.29018 6.35157 6.51820 6.96771 7.35592 8.12287 8.35024 9.31227 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.002815 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.019621 B = 9943.360473 C =10890.790927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 H 0.104 0.896 4 C 0.101 3.899 5 N -0.602 5.602 6 C 0.607 3.393 7 O -0.574 6.574 8 C -0.088 4.088 9 N -0.484 5.484 10 C 0.200 3.800 11 O -0.194 6.194 12 C 0.077 3.923 13 C -0.117 4.117 14 C -0.144 4.144 15 C -0.151 4.151 16 C 0.126 3.874 17 C -0.066 4.066 18 C -0.120 4.120 19 C 0.169 3.831 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.078 0.922 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.276 1.276 27 H -0.298 1.298 28 H -0.278 1.278 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.310 0.690 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.032 0.968 47 H 0.374 0.626 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 -1.684 -26.996 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.122 0.878 4 C -0.021 4.021 5 N -0.333 5.333 6 C 0.397 3.603 7 O -0.455 6.455 8 C -0.206 4.206 9 N -0.212 5.212 10 C -0.028 4.028 11 O -0.081 6.081 12 C 0.020 3.980 13 C -0.136 4.136 14 C -0.181 4.181 15 C -0.188 4.188 16 C 0.003 3.997 17 C -0.067 4.067 18 C -0.178 4.178 19 C 0.042 3.958 20 N -0.386 5.386 21 C -0.374 4.374 22 H 0.096 0.904 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.204 1.204 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.325 0.675 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.050 0.950 47 H 0.206 0.794 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.504 -1.539 -26.509 29.350 hybrid contribution 0.926 -0.700 1.223 1.686 sum -11.579 -2.239 -25.286 27.901 Atomic orbital electron populations 1.21817 0.93160 1.01278 1.02686 1.22169 0.97373 0.99672 0.91726 0.87752 1.22967 1.02454 0.78936 0.97744 1.48750 1.61016 1.06588 1.16951 1.16742 0.77626 0.82303 0.83667 1.90768 1.55616 1.31627 1.67499 1.20988 1.12279 0.90140 0.97203 1.70662 1.16016 1.29658 1.04847 1.29334 0.97361 0.78328 0.97734 1.84361 1.63177 1.25983 1.34564 1.22649 0.95744 0.96127 0.83467 1.20726 1.05015 0.82370 1.05466 1.23217 1.01772 0.98771 0.94318 1.23185 0.92999 1.00453 1.02195 1.22262 0.96890 0.98214 0.82343 1.21586 0.95249 0.94466 0.95449 1.21743 0.96988 1.00758 0.98283 1.20867 0.94260 0.93273 0.87393 1.42622 1.57275 1.12793 1.25941 1.19619 1.19923 0.96031 1.01833 0.90404 1.25574 1.03364 0.96763 1.01264 1.69828 1.50780 1.10053 1.31581 0.85205 0.78953 0.77108 0.78446 1.20224 1.22463 1.20447 0.91868 0.90557 0.94031 0.85744 0.90888 0.67518 0.85232 0.86929 0.86043 0.86675 0.87828 0.91918 0.92943 0.91154 0.92733 0.95095 0.95747 0.95044 0.79378 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 7.93 71.98 0.57 -2.26 16 2 C -0.09 -2.24 3.30 -9.89 -0.03 -2.27 16 3 H 0.10 2.28 7.71 -2.38 -0.02 2.27 16 4 C 0.10 2.55 6.24 86.53 0.54 3.09 16 5 N -0.60 -19.75 3.32 -811.80 -2.69 -22.44 16 6 C 0.61 21.09 7.91 86.66 0.69 21.77 16 7 O -0.57 -23.53 15.15 -4.08 -0.06 -23.59 16 8 C -0.09 -2.40 6.86 40.41 0.28 -2.12 16 9 N -0.48 -9.97 8.39 -305.15 -2.56 -12.53 16 10 C 0.20 2.38 13.19 130.52 1.72 4.10 16 11 O -0.19 -3.14 10.50 0.33 0.00 -3.13 16 12 C 0.08 1.77 6.90 25.18 0.17 1.95 16 13 C -0.12 -2.52 5.61 -11.54 -0.06 -2.58 16 14 C -0.14 -1.95 10.18 30.62 0.31 -1.64 16 15 C -0.15 -2.40 10.24 30.62 0.31 -2.09 16 16 C 0.13 4.73 5.71 86.53 0.49 5.23 16 17 C -0.07 -2.22 0.73 -51.27 -0.04 -2.26 16 18 C -0.12 -4.17 7.07 71.98 0.51 -3.66 16 19 C 0.17 6.72 4.87 86.38 0.42 7.14 16 20 N -0.74 -38.45 5.13 -343.45 -1.76 -40.21 16 21 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 24 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 25 Si 0.97 47.21 29.55 68.60 2.03 49.23 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 29 H 0.06 1.34 6.84 -2.38 -0.02 1.33 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.01 6.76 -2.39 -0.02 0.99 16 32 H 0.12 2.83 5.18 -2.39 -0.01 2.82 16 33 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.31 -0.45 8.06 -2.91 -0.02 -0.47 16 35 H 0.13 3.48 6.66 -2.38 -0.02 3.47 16 36 H 0.11 1.26 8.00 -2.39 -0.02 1.25 16 37 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 2.52 7.83 -2.39 -0.02 2.50 16 41 H 0.05 2.30 7.60 -2.39 -0.02 2.28 16 42 H 0.07 2.21 6.89 -2.39 -0.02 2.20 16 43 H 0.05 1.78 6.71 -2.38 -0.02 1.76 16 44 H 0.03 1.27 6.78 -2.39 -0.02 1.26 16 45 H 0.02 0.97 8.10 -2.39 -0.02 0.95 16 46 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.37 20.95 6.19 -92.71 -0.57 20.37 16 48 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.26 382.95 2.84 -74.42 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.41 Total: 32.03 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 7.19 Total: 7.41 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -6.73 Total: -136.38 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.06 Total: -26.72 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.23 kcal Total: -77.26 2.84 -74.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183076513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.762 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds