Wall clock time and date at job start Tue Mar 31 2020 17:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.30569 * 2 1 4 4 C 1.54790 * 110.61464 * 237.81487 * 2 1 3 5 5 N 1.48142 * 104.42180 * 265.18149 * 4 2 1 6 6 C 1.34768 * 127.84085 * 140.36480 * 5 4 2 7 7 O 1.21649 * 120.00130 * 184.79112 * 6 5 4 8 8 C 1.47084 * 119.99880 * 4.79190 * 6 5 4 9 9 C 1.39337 * 120.58492 * 75.16760 * 8 6 5 10 10 C 1.39476 * 118.95857 * 180.02562 * 9 8 6 11 11 C 1.35753 * 120.12919 * 0.02562 * 10 9 8 12 12 N 1.35434 * 121.23497 * 359.74363 * 11 10 9 13 13 C 1.46494 * 119.47446 * 180.26533 * 12 11 10 14 14 C 1.34653 * 121.05455 * 0.51867 * 12 11 10 15 15 O 1.21888 * 120.10575 * 179.75988 * 14 12 11 16 16 C 1.48151 * 104.32189 * 320.11110 * 5 4 2 17 17 C 1.54292 * 110.34047 * 122.16936 * 2 1 3 18 18 C 1.52999 * 110.34218 * 0.10643 * 17 2 1 19 19 C 1.53001 * 110.34034 * 237.84727 * 17 2 1 20 20 N 1.46507 * 109.46614 * 183.00836 * 19 17 2 21 21 C 1.36932 * 119.99480 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00505 * 0.02562 * 21 20 19 23 23 C 1.38820 * 120.00036 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00521 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99643 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46750 * 89.99804 * 25 23 21 27 27 H 1.48495 * 109.47253 * 209.99965 * 25 23 21 28 28 H 1.48501 * 109.47207 * 330.00758 * 25 23 21 29 29 H 1.08997 * 109.46841 * 297.83236 * 1 2 3 30 30 H 1.08997 * 109.46632 * 57.83038 * 1 2 3 31 31 H 1.08997 * 109.46811 * 177.83109 * 1 2 3 32 32 H 1.09000 * 110.54185 * 146.43982 * 4 2 1 33 33 H 1.08996 * 110.46040 * 23.88449 * 4 2 1 34 34 H 1.07999 * 120.52023 * 0.04795 * 9 8 6 35 35 H 1.08007 * 119.93237 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.38315 * 180.02562 * 11 10 9 37 37 H 1.09009 * 109.46895 * 270.25581 * 13 12 11 38 38 H 1.09001 * 109.47469 * 30.25062 * 13 12 11 39 39 H 1.08997 * 109.47891 * 150.25770 * 13 12 11 40 40 H 1.08998 * 110.40681 * 158.63410 * 16 5 4 41 41 H 1.08999 * 110.40103 * 281.05838 * 16 5 4 42 42 H 1.09003 * 109.46834 * 176.99390 * 18 17 2 43 43 H 1.09003 * 109.47016 * 296.98974 * 18 17 2 44 44 H 1.09002 * 109.47277 * 56.98870 * 18 17 2 45 45 H 1.09000 * 109.46954 * 303.00708 * 19 17 2 46 46 H 1.08998 * 109.47165 * 63.01368 * 19 17 2 47 47 H 0.96996 * 119.99979 * 0.02562 * 20 19 17 48 48 H 0.96991 * 120.00428 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0751 -0.7717 -1.2262 5 7 2.3178 -2.1430 -0.7210 6 6 2.0834 -3.3103 -1.3525 7 8 2.2560 -4.3633 -0.7684 8 6 1.6191 -3.3110 -2.7481 9 6 2.5009 -3.0272 -3.7889 10 6 2.0242 -3.0367 -5.0996 11 6 0.7197 -3.3187 -5.3482 12 7 -0.1421 -3.6001 -4.3419 13 6 -1.5405 -3.9047 -4.6546 14 6 0.2648 -3.5993 -3.0584 15 8 -0.5265 -3.8507 -2.1660 16 6 2.8824 -1.9400 0.6336 17 6 2.0664 -0.7703 1.2246 18 6 0.9061 -1.3035 2.0674 19 6 2.9671 0.1336 2.0688 20 7 3.5224 -0.6358 3.1850 21 6 4.3639 -0.0321 4.0809 22 1 4.6179 1.0111 3.9649 23 6 4.8905 -0.7612 5.1384 24 7 5.6990 -0.1810 5.9998 25 14 4.4506 -2.5655 5.3395 26 1 5.4321 -3.3996 4.6004 27 1 4.4810 -2.9249 6.7800 28 1 3.0892 -2.8065 4.7977 29 1 -0.3633 0.4798 0.9088 30 1 -0.3632 0.5472 -0.8699 31 1 -0.3633 -1.0269 -0.0389 32 1 3.0058 -0.3253 -1.5762 33 1 1.3352 -0.7868 -2.0264 34 1 3.5375 -2.8036 -3.5839 35 1 2.6939 -2.8185 -5.9183 36 1 0.3635 -3.3232 -6.3677 37 1 -2.1211 -2.9822 -4.6587 38 1 -1.5992 -4.3753 -5.6360 39 1 -1.9417 -4.5831 -3.9018 40 1 2.7525 -2.8377 1.2380 41 1 3.9373 -1.6733 0.5695 42 1 1.2998 -1.8896 2.8980 43 1 0.3250 -0.4673 2.4561 44 1 0.2671 -1.9336 1.4487 45 1 3.7798 0.5158 1.4509 46 1 2.3829 0.9677 2.4574 47 1 3.2946 -1.5728 3.2890 48 1 6.0672 -0.6905 6.7384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183200374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:11 Heat of formation + Delta-G solvation = -6.481876 kcal Electronic energy + Delta-G solvation = -29817.443798 eV Core-core repulsion = 25873.853561 eV Total energy + Delta-G solvation = -3943.590236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.76519 -40.16602 -38.16660 -37.28184 -35.00463 -34.78323 -33.06518 -31.55792 -30.63179 -29.88618 -28.17746 -27.49850 -26.17750 -25.54500 -24.49848 -23.07013 -22.85894 -21.06804 -19.99629 -18.68679 -18.05833 -17.87456 -17.46432 -17.00505 -16.52091 -16.08773 -15.77052 -15.35582 -14.88007 -14.52863 -14.17379 -14.13615 -13.81877 -13.61264 -13.56200 -13.45134 -13.11793 -12.92768 -12.71002 -12.64900 -12.48784 -12.24253 -12.20202 -11.97863 -11.64965 -11.38817 -11.34157 -11.17690 -10.79670 -10.53354 -10.41265 -10.35055 -10.31086 -10.17267 -9.92164 -9.81572 -9.51120 -8.84765 -8.58265 -8.36046 -7.17620 -5.72114 -3.07074 0.19238 1.45964 2.02816 2.70993 2.96311 3.27361 3.44882 3.49220 3.52811 4.01321 4.16838 4.36941 4.50864 4.57908 4.62925 4.65380 4.74195 4.75902 4.85812 4.90942 5.13052 5.28262 5.35522 5.39518 5.47399 5.49570 5.51876 5.57645 5.63024 5.69590 5.75040 5.83644 5.90503 5.98166 6.01176 6.05199 6.10567 6.23763 6.25876 6.38339 6.54337 6.57897 6.62129 6.71504 6.79933 7.61895 7.64910 8.03841 8.22242 8.47070 9.26363 9.99162 10.18930 11.46311 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.003048 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.638621 B = 9183.405926 C = 9454.768284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.090 0.910 4 C 0.108 3.892 5 N -0.612 5.612 6 C 0.604 3.396 7 O -0.528 6.528 8 C -0.246 4.246 9 C 0.022 3.978 10 C -0.234 4.234 11 C 0.147 3.853 12 N -0.497 5.497 13 C 0.057 3.943 14 C 0.530 3.470 15 O -0.528 6.528 16 C 0.116 3.884 17 C -0.079 4.079 18 C -0.134 4.134 19 C 0.174 3.826 20 N -0.755 5.755 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.879 3.121 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.029 0.971 46 H 0.031 0.969 47 H 0.362 0.638 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 -2.316 -30.893 33.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.108 0.892 4 C -0.015 4.015 5 N -0.346 5.346 6 C 0.391 3.609 7 O -0.404 6.404 8 C -0.253 4.253 9 C -0.001 4.001 10 C -0.257 4.257 11 C 0.018 3.982 12 N -0.206 5.206 13 C -0.084 4.084 14 C 0.331 3.669 15 O -0.408 6.408 16 C -0.006 4.006 17 C -0.080 4.080 18 C -0.191 4.191 19 C 0.046 3.954 20 N -0.401 5.401 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.583 5.583 25 Si 0.709 3.291 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.195 0.805 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.571 -3.011 -29.902 32.975 hybrid contribution -0.116 -1.218 0.086 1.227 sum -13.687 -4.229 -29.815 33.078 Atomic orbital electron populations 1.21905 0.94476 1.02118 1.01450 1.22177 0.96312 0.99438 0.93499 0.89166 1.22540 1.00361 0.81728 0.96903 1.48886 1.62852 1.05112 1.17721 1.16943 0.76933 0.82458 0.84526 1.90832 1.52218 1.30605 1.66699 1.20872 0.94398 1.14831 0.95190 1.21853 0.99622 0.87182 0.91433 1.20582 0.95011 1.12480 0.97614 1.22120 0.90510 0.92113 0.93485 1.45381 1.11755 1.56025 1.07485 1.22232 0.79436 1.03425 1.03336 1.16716 0.88732 0.80080 0.81421 1.90980 1.55443 1.50264 1.44143 1.22538 0.97388 0.98877 0.81788 1.21763 0.96249 0.95217 0.94803 1.21894 0.97098 1.00898 0.99251 1.20689 0.93540 0.92678 0.88459 1.42754 1.57291 1.09942 1.30080 1.19037 1.18612 0.96543 1.02995 0.89211 1.24641 0.99385 0.97497 0.97477 1.69692 1.36038 1.35734 1.16843 0.86632 0.78390 0.86900 0.77151 1.20950 1.21710 1.20219 0.91806 0.93332 0.92199 0.90753 0.90916 0.84138 0.82974 0.81659 0.90268 0.89402 0.88509 0.89991 0.89966 0.92307 0.92125 0.92809 0.95284 0.95105 0.80492 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.95 37.16 0.30 -1.38 16 2 C -0.09 -1.17 3.30 -89.00 -0.29 -1.47 16 3 H 0.09 1.00 7.71 -51.93 -0.40 0.60 16 4 C 0.11 1.24 6.45 -2.20 -0.01 1.23 16 5 N -0.61 -9.28 3.31 -170.45 -0.56 -9.85 16 6 C 0.60 10.23 6.90 -12.68 -0.09 10.15 16 7 O -0.53 -11.32 17.36 5.23 0.09 -11.23 16 8 C -0.25 -3.18 4.61 -104.50 -0.48 -3.67 16 9 C 0.02 0.18 9.91 -38.71 -0.38 -0.20 16 10 C -0.23 -1.14 9.99 -40.01 -0.40 -1.54 16 11 C 0.15 0.63 10.25 -16.85 -0.17 0.45 16 12 N -0.50 -3.89 2.98 -126.77 -0.38 -4.27 16 13 C 0.06 0.28 10.34 59.84 0.62 0.90 16 14 C 0.53 6.97 7.44 -14.92 -0.11 6.86 16 15 O -0.53 -9.19 16.11 5.02 0.08 -9.11 16 16 C 0.12 1.97 5.56 -2.41 -0.01 1.96 16 17 C -0.08 -1.26 0.73 -153.11 -0.11 -1.37 16 18 C -0.13 -2.24 7.08 37.16 0.26 -1.98 16 19 C 0.17 3.30 4.85 -4.04 -0.02 3.28 16 20 N -0.75 -18.05 4.93 -59.90 -0.30 -18.34 16 21 C -0.24 -6.91 10.47 -15.06 -0.16 -7.06 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.84 13.97 55.49 0.78 -29.07 16 25 Si 0.88 23.04 27.73 -169.99 -4.71 18.32 16 26 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 28 H -0.28 -6.91 6.52 56.52 0.37 -6.55 16 29 H 0.06 0.75 6.89 -51.93 -0.36 0.39 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.82 6.72 -51.93 -0.35 0.47 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.75 7.25 -51.93 -0.38 0.38 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.15 0.27 8.06 -52.48 -0.42 -0.15 16 36 H 0.17 -0.04 8.02 -52.49 -0.42 -0.46 16 37 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 38 H 0.09 0.11 8.00 -51.93 -0.42 -0.30 16 39 H 0.10 0.68 7.38 -51.93 -0.38 0.30 16 40 H 0.08 1.60 7.56 -51.93 -0.39 1.20 16 41 H 0.08 1.41 7.86 -51.93 -0.41 1.00 16 42 H 0.06 1.11 7.01 -51.93 -0.36 0.74 16 43 H 0.06 0.94 6.98 -51.93 -0.36 0.58 16 44 H 0.05 0.89 6.62 -51.93 -0.34 0.55 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.36 8.69 4.14 -40.82 -0.17 8.52 16 48 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -39.91 383.79 -7.68 -47.59 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.29 Total: 3.93 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.17 Total: 6.23 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.46 Total: -61.53 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.17 Total: -20.33 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.91 -7.68 -47.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183200374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.111 kcal (2) G-P(sol) polarization free energy of solvation -39.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds