Wall clock time and date at job start Tue Mar 31 2020 17:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.30569 * 2 1 4 4 C 1.54790 * 110.61464 * 237.81487 * 2 1 3 5 5 N 1.48142 * 104.42180 * 265.18149 * 4 2 1 6 6 C 1.34768 * 127.84085 * 140.36480 * 5 4 2 7 7 O 1.21649 * 120.00130 * 184.79112 * 6 5 4 8 8 C 1.47084 * 119.99880 * 4.79190 * 6 5 4 9 9 C 1.39337 * 120.58492 * 75.16760 * 8 6 5 10 10 C 1.39476 * 118.95857 * 180.02562 * 9 8 6 11 11 C 1.35753 * 120.12919 * 0.02562 * 10 9 8 12 12 N 1.35434 * 121.23497 * 359.74363 * 11 10 9 13 13 C 1.46494 * 119.47446 * 180.26533 * 12 11 10 14 14 C 1.34653 * 121.05455 * 0.51867 * 12 11 10 15 15 O 1.21888 * 120.10575 * 179.75988 * 14 12 11 16 16 C 1.48151 * 104.32189 * 320.11110 * 5 4 2 17 17 C 1.54292 * 110.34047 * 122.16936 * 2 1 3 18 18 C 1.52999 * 110.34218 * 0.10643 * 17 2 1 19 19 C 1.53001 * 110.34034 * 237.84727 * 17 2 1 20 20 N 1.46507 * 109.46614 * 183.00836 * 19 17 2 21 21 C 1.36932 * 119.99480 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00505 * 0.02562 * 21 20 19 23 23 C 1.38820 * 120.00036 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00521 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99643 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46750 * 89.99804 * 25 23 21 27 27 H 1.48495 * 109.47253 * 209.99965 * 25 23 21 28 28 H 1.48501 * 109.47207 * 330.00758 * 25 23 21 29 29 H 1.08997 * 109.46841 * 297.83236 * 1 2 3 30 30 H 1.08997 * 109.46632 * 57.83038 * 1 2 3 31 31 H 1.08997 * 109.46811 * 177.83109 * 1 2 3 32 32 H 1.09000 * 110.54185 * 146.43982 * 4 2 1 33 33 H 1.08996 * 110.46040 * 23.88449 * 4 2 1 34 34 H 1.07999 * 120.52023 * 0.04795 * 9 8 6 35 35 H 1.08007 * 119.93237 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.38315 * 180.02562 * 11 10 9 37 37 H 1.09009 * 109.46895 * 270.25581 * 13 12 11 38 38 H 1.09001 * 109.47469 * 30.25062 * 13 12 11 39 39 H 1.08997 * 109.47891 * 150.25770 * 13 12 11 40 40 H 1.08998 * 110.40681 * 158.63410 * 16 5 4 41 41 H 1.08999 * 110.40103 * 281.05838 * 16 5 4 42 42 H 1.09003 * 109.46834 * 176.99390 * 18 17 2 43 43 H 1.09003 * 109.47016 * 296.98974 * 18 17 2 44 44 H 1.09002 * 109.47277 * 56.98870 * 18 17 2 45 45 H 1.09000 * 109.46954 * 303.00708 * 19 17 2 46 46 H 1.08998 * 109.47165 * 63.01368 * 19 17 2 47 47 H 0.96996 * 119.99979 * 0.02562 * 20 19 17 48 48 H 0.96991 * 120.00428 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0751 -0.7717 -1.2262 5 7 2.3178 -2.1430 -0.7210 6 6 2.0834 -3.3103 -1.3525 7 8 2.2560 -4.3633 -0.7684 8 6 1.6191 -3.3110 -2.7481 9 6 2.5009 -3.0272 -3.7889 10 6 2.0242 -3.0367 -5.0996 11 6 0.7197 -3.3187 -5.3482 12 7 -0.1421 -3.6001 -4.3419 13 6 -1.5405 -3.9047 -4.6546 14 6 0.2648 -3.5993 -3.0584 15 8 -0.5265 -3.8507 -2.1660 16 6 2.8824 -1.9400 0.6336 17 6 2.0664 -0.7703 1.2246 18 6 0.9061 -1.3035 2.0674 19 6 2.9671 0.1336 2.0688 20 7 3.5224 -0.6358 3.1850 21 6 4.3639 -0.0321 4.0809 22 1 4.6179 1.0111 3.9649 23 6 4.8905 -0.7612 5.1384 24 7 5.6990 -0.1810 5.9998 25 14 4.4506 -2.5655 5.3395 26 1 5.4321 -3.3996 4.6004 27 1 4.4810 -2.9249 6.7800 28 1 3.0892 -2.8065 4.7977 29 1 -0.3633 0.4798 0.9088 30 1 -0.3632 0.5472 -0.8699 31 1 -0.3633 -1.0269 -0.0389 32 1 3.0058 -0.3253 -1.5762 33 1 1.3352 -0.7868 -2.0264 34 1 3.5375 -2.8036 -3.5839 35 1 2.6939 -2.8185 -5.9183 36 1 0.3635 -3.3232 -6.3677 37 1 -2.1211 -2.9822 -4.6587 38 1 -1.5992 -4.3753 -5.6360 39 1 -1.9417 -4.5831 -3.9018 40 1 2.7525 -2.8377 1.2380 41 1 3.9373 -1.6733 0.5695 42 1 1.2998 -1.8896 2.8980 43 1 0.3250 -0.4673 2.4561 44 1 0.2671 -1.9336 1.4487 45 1 3.7798 0.5158 1.4509 46 1 2.3829 0.9677 2.4574 47 1 3.2946 -1.5728 3.2890 48 1 6.0672 -0.6905 6.7384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183200374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:10 Heat of formation + Delta-G solvation = -36.223348 kcal Electronic energy + Delta-G solvation = -29818.733485 eV Core-core repulsion = 25873.853561 eV Total energy + Delta-G solvation = -3944.879923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.50209 -41.33933 -39.43346 -38.10556 -36.65355 -35.59189 -34.53770 -33.33429 -31.67471 -31.12884 -28.79611 -28.61757 -27.59708 -26.73990 -25.49322 -24.52866 -23.70698 -22.48664 -21.04198 -20.22895 -19.53980 -18.57404 -18.53324 -17.96888 -17.32008 -17.05473 -16.92828 -16.54300 -16.28647 -15.67821 -15.57879 -15.46162 -15.25259 -14.87743 -14.69126 -14.45982 -14.26464 -13.96710 -13.71205 -13.61756 -13.52651 -13.44882 -13.23646 -13.11344 -12.99125 -12.79393 -12.70317 -12.61157 -12.47788 -12.14449 -11.89168 -11.59154 -11.55180 -11.36624 -11.33056 -11.12018 -11.00132 -10.92902 -9.81970 -9.28786 -9.03926 -8.04799 -5.35401 -0.40037 0.83059 1.23797 1.32739 1.35055 1.39902 1.72459 1.96968 2.43699 2.52610 3.24445 3.27883 3.47357 3.59535 3.63867 3.72597 3.86171 3.92778 4.02193 4.16214 4.17695 4.19903 4.23349 4.38595 4.42618 4.46933 4.54949 4.62809 4.70896 4.75002 4.78232 4.80863 4.85184 4.92216 4.97537 5.01132 5.02636 5.07772 5.18277 5.22088 5.27732 5.34185 5.51597 5.55421 5.76166 5.94589 6.20346 6.47611 6.87132 7.02075 7.06477 7.84174 8.00988 9.16896 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.003048 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.638621 B = 9183.405926 C = 9454.768284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.116 0.884 4 C 0.110 3.890 5 N -0.610 5.610 6 C 0.599 3.401 7 O -0.596 6.596 8 C -0.307 4.307 9 C 0.051 3.949 10 C -0.234 4.234 11 C 0.174 3.826 12 N -0.491 5.491 13 C 0.051 3.949 14 C 0.517 3.483 15 O -0.599 6.599 16 C 0.115 3.885 17 C -0.071 4.071 18 C -0.128 4.128 19 C 0.173 3.827 20 N -0.759 5.759 21 C -0.222 4.222 22 H 0.068 0.932 23 C -0.056 4.056 24 N -0.980 5.980 25 Si 0.936 3.064 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.265 1.265 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.152 0.848 35 H 0.198 0.802 36 H 0.229 0.771 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.037 0.963 47 H 0.361 0.639 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.157 -1.095 -36.568 39.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.134 0.866 4 C -0.012 4.012 5 N -0.342 5.342 6 C 0.389 3.611 7 O -0.477 6.477 8 C -0.314 4.314 9 C 0.028 3.972 10 C -0.255 4.255 11 C 0.044 3.956 12 N -0.197 5.197 13 C -0.089 4.089 14 C 0.320 3.680 15 O -0.485 6.485 16 C -0.008 4.008 17 C -0.072 4.072 18 C -0.185 4.185 19 C 0.047 3.953 20 N -0.405 5.405 21 C -0.353 4.353 22 H 0.086 0.914 23 C -0.248 4.248 24 N -0.631 5.631 25 Si 0.765 3.235 26 H -0.209 1.209 27 H -0.219 1.219 28 H -0.190 1.190 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.170 0.830 35 H 0.215 0.785 36 H 0.246 0.754 37 H 0.111 0.889 38 H 0.155 0.845 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.194 0.806 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.572 -1.740 -35.681 38.581 hybrid contribution 0.172 -1.509 1.581 2.193 sum -14.401 -3.249 -34.100 37.158 Atomic orbital electron populations 1.21844 0.93868 1.00842 1.02812 1.22223 0.96746 1.00167 0.91610 0.86600 1.22785 1.02213 0.79338 0.96819 1.48975 1.61950 1.06492 1.16766 1.17737 0.75555 0.81681 0.86174 1.90760 1.55105 1.32956 1.68852 1.20438 0.95641 1.21759 0.93594 1.22203 0.99351 0.83710 0.91974 1.21134 0.96057 1.11556 0.96796 1.23237 0.89810 0.87665 0.94844 1.45486 1.13494 1.54211 1.06557 1.22509 0.77813 1.03920 1.04675 1.16837 0.88443 0.80032 0.82696 1.90926 1.56965 1.54116 1.46479 1.22375 0.97693 0.97724 0.83041 1.21645 0.95152 0.94731 0.95712 1.21830 0.97430 1.00894 0.98370 1.20882 0.94215 0.92810 0.87396 1.42847 1.56751 1.10222 1.30676 1.19075 1.17713 0.95580 1.02952 0.91374 1.25280 1.00278 1.01314 0.97895 1.69829 1.38086 1.37297 1.17903 0.85696 0.78628 0.82375 0.76807 1.20881 1.21860 1.19025 0.91731 0.90560 0.94892 0.87999 0.89164 0.83023 0.78495 0.75418 0.88916 0.84534 0.91651 0.93683 0.90189 0.95131 0.90747 0.93313 0.94050 0.94460 0.80629 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.95 71.98 0.57 -2.41 16 2 C -0.09 -2.00 3.30 -9.74 -0.03 -2.03 16 3 H 0.12 2.12 7.71 -2.39 -0.02 2.10 16 4 C 0.11 2.31 6.45 86.67 0.56 2.87 16 5 N -0.61 -18.96 3.31 -811.43 -2.69 -21.64 16 6 C 0.60 21.49 6.90 86.57 0.60 22.08 16 7 O -0.60 -28.00 17.36 -4.18 -0.07 -28.08 16 8 C -0.31 -7.95 4.61 -19.79 -0.09 -8.04 16 9 C 0.05 0.71 9.91 22.83 0.23 0.93 16 10 C -0.23 -0.91 9.99 21.99 0.22 -0.69 16 11 C 0.17 0.41 10.25 83.56 0.86 1.27 16 12 N -0.49 -6.22 2.98 -673.18 -2.00 -8.23 16 13 C 0.05 0.35 10.34 127.77 1.32 1.67 16 14 C 0.52 13.68 7.44 85.17 0.63 14.31 16 15 O -0.60 -22.46 16.11 -4.95 -0.08 -22.54 16 16 C 0.11 4.06 5.56 86.53 0.48 4.54 16 17 C -0.07 -2.26 0.73 -51.27 -0.04 -2.30 16 18 C -0.13 -4.41 7.08 71.98 0.51 -3.90 16 19 C 0.17 6.44 4.85 86.38 0.42 6.86 16 20 N -0.76 -36.68 4.93 -343.44 -1.69 -38.37 16 21 C -0.22 -12.87 10.47 84.04 0.88 -11.99 16 22 H 0.07 4.20 8.06 -2.91 -0.02 4.18 16 23 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 24 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16 25 Si 0.94 49.04 27.73 68.60 1.90 50.94 16 26 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 28 H -0.26 -13.21 6.52 99.48 0.65 -12.56 16 29 H 0.06 1.39 6.89 -2.39 -0.02 1.38 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 0.90 6.72 -2.39 -0.02 0.89 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.63 7.25 -2.39 -0.02 1.62 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.20 -0.87 8.06 -2.91 -0.02 -0.89 16 36 H 0.23 -2.24 8.02 -2.91 -0.02 -2.26 16 37 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.14 -0.40 8.00 -2.39 -0.02 -0.42 16 39 H 0.06 0.93 7.38 -2.39 -0.02 0.91 16 40 H 0.04 1.91 7.56 -2.39 -0.02 1.89 16 41 H 0.08 2.81 7.86 -2.39 -0.02 2.80 16 42 H 0.03 1.19 7.01 -2.39 -0.02 1.18 16 43 H 0.07 2.31 6.98 -2.39 -0.02 2.29 16 44 H 0.05 1.71 6.62 -2.39 -0.02 1.70 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.36 17.68 4.14 -92.71 -0.38 17.30 16 48 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -98.70 383.79 3.78 -94.92 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.53 Total: 16.64 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 7.58 Total: 20.23 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -6.08 Total: -132.12 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.15 Total: -50.61 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.90 Total: 50.94 kcal Total: -98.70 3.78 -94.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183200374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.693 kcal (2) G-P(sol) polarization free energy of solvation -98.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds