Wall clock time and date at job start Tue Mar 31 2020 17:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35653 * 116.99943 * 2 1 4 4 C 1.39337 * 120.53729 * 0.02562 * 3 2 1 5 5 C 1.38311 * 118.43915 * 179.97438 * 4 3 2 6 6 C 1.38759 * 119.44082 * 0.02562 * 5 4 3 7 7 N 1.31378 * 121.07107 * 0.02562 * 6 5 4 8 8 C 1.32859 * 121.69411 * 359.66640 * 7 6 5 9 9 C 1.47835 * 119.78299 * 180.31238 * 8 7 6 10 10 O 1.21550 * 119.99759 * 174.75245 * 9 8 7 11 11 N 1.34778 * 119.99946 * 354.74658 * 9 8 7 12 12 C 1.48142 * 127.83962 * 4.36601 * 11 9 8 13 13 C 1.54382 * 104.61979 * 219.58467 * 12 11 9 14 14 H 1.08997 * 110.34417 * 95.11005 * 13 12 11 15 15 C 1.53002 * 110.34308 * 217.26295 * 13 12 11 16 16 C 1.54287 * 104.95895 * 336.13110 * 13 12 11 17 17 C 1.52999 * 110.34420 * 241.02313 * 16 13 12 18 18 C 1.52999 * 110.33954 * 118.87080 * 16 13 12 19 19 N 1.46506 * 109.46971 * 179.97438 * 18 16 13 20 20 C 1.36937 * 119.99900 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00365 * 359.97438 * 20 19 18 22 22 C 1.38820 * 119.99648 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99572 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00097 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.46897 * 89.99931 * 24 22 20 26 26 H 1.48500 * 109.46840 * 210.00110 * 24 22 20 27 27 H 1.48497 * 109.46982 * 329.99823 * 24 22 20 28 28 C 1.48143 * 127.83440 * 184.04276 * 11 9 8 29 29 H 1.09004 * 109.46926 * 299.99545 * 1 2 3 30 30 H 1.09003 * 109.47555 * 59.99602 * 1 2 3 31 31 H 1.09001 * 109.46754 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.78464 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.27463 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.46671 * 180.02562 * 6 5 4 35 35 H 1.09002 * 110.40974 * 338.36959 * 12 11 9 36 36 H 1.09003 * 110.41088 * 100.79575 * 12 11 9 37 37 H 1.09003 * 109.47062 * 58.54268 * 15 13 12 38 38 H 1.09000 * 109.47162 * 178.54072 * 15 13 12 39 39 H 1.08997 * 109.47249 * 298.54314 * 15 13 12 40 40 H 1.09001 * 109.46902 * 60.00056 * 17 16 13 41 41 H 1.09004 * 109.47091 * 179.97438 * 17 16 13 42 42 H 1.08997 * 109.47432 * 300.00285 * 17 16 13 43 43 H 1.08998 * 109.47354 * 299.99951 * 18 16 13 44 44 H 1.08999 * 109.47346 * 60.00605 * 18 16 13 45 45 H 0.96998 * 119.99905 * 0.02562 * 19 18 16 46 46 H 0.97000 * 119.99356 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.40615 * 259.19669 * 28 11 9 48 48 H 1.08998 * 110.40788 * 21.63442 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3843 0.0005 5 6 1.9695 3.5929 0.0011 6 6 3.3571 3.6012 0.0005 7 7 4.0418 2.4800 -0.0010 8 6 3.4409 1.2951 0.0045 9 6 4.2532 0.0598 0.0095 10 8 3.7112 -1.0234 0.1108 11 7 5.5945 0.1349 -0.0984 12 6 6.4360 1.3533 -0.1410 13 6 7.5228 1.0398 -1.1917 14 1 7.2312 1.4305 -2.1666 15 6 8.8656 1.6338 -0.7616 16 6 7.6058 -0.5003 -1.2315 17 6 9.0065 -0.9681 -0.8314 18 6 7.2525 -1.0161 -2.6279 19 7 7.3378 -2.4785 -2.6444 20 6 7.0623 -3.1675 -3.7953 21 1 6.7817 -2.6329 -4.6907 22 6 7.1426 -4.5533 -3.8107 23 7 6.8783 -5.2155 -4.9171 24 14 7.6258 -5.4782 -2.2614 25 1 6.4064 -5.8055 -1.4797 26 1 8.3275 -6.7332 -2.6326 27 1 8.5277 -4.6311 -1.4402 28 6 6.5623 -0.9826 -0.1948 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2174 2.3527 0.0005 33 1 1.4193 4.5222 0.0011 34 1 3.8827 4.5446 0.0013 35 1 5.8436 2.2138 -0.4521 36 1 6.8903 1.5358 0.8329 37 1 9.1500 1.2248 0.2079 38 1 9.6273 1.3823 -1.4997 39 1 8.7762 2.7175 -0.6866 40 1 9.2288 -0.6261 0.1794 41 1 9.0491 -2.0568 -0.8639 42 1 9.7394 -0.5546 -1.5242 43 1 6.2386 -0.7080 -2.8833 44 1 7.9517 -0.6036 -3.3553 45 1 7.5887 -2.9588 -1.8399 46 1 6.9348 -6.1838 -4.9279 47 1 7.0361 -1.1594 0.7708 48 1 6.0653 -1.8866 -0.5466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183262757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:59 Heat of formation + Delta-G solvation = 3.065775 kcal Electronic energy + Delta-G solvation = -29872.712452 eV Core-core repulsion = 25929.536233 eV Total energy + Delta-G solvation = -3943.176219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17228 -39.86814 -38.41086 -37.88769 -34.79342 -33.30551 -32.50955 -31.51123 -31.07091 -29.84452 -27.80856 -27.09759 -26.14557 -25.54661 -24.24877 -23.10410 -22.82858 -20.92365 -20.06363 -18.45917 -18.27491 -17.82014 -17.40678 -16.81917 -16.25159 -15.84740 -15.42397 -15.15983 -14.79429 -14.51956 -14.50563 -14.17396 -14.06234 -13.74330 -13.44646 -13.41807 -13.09901 -12.88911 -12.54483 -12.52117 -11.98184 -11.92754 -11.75727 -11.72298 -11.54795 -11.37343 -11.31193 -11.15439 -10.80143 -10.52363 -10.26879 -10.16939 -10.14472 -9.91744 -9.84114 -9.45785 -9.39397 -8.79415 -8.76206 -8.35820 -7.11201 -5.66925 -3.01093 0.43577 0.91189 2.79540 2.87728 3.07372 3.44998 3.49577 3.53723 3.70858 3.99784 4.24038 4.36800 4.59218 4.69093 4.76421 4.79314 4.80626 4.86612 4.89719 4.97045 5.13610 5.27053 5.39972 5.49240 5.54655 5.55064 5.61447 5.61876 5.68206 5.79336 5.80428 5.88804 5.93456 6.00169 6.07280 6.15531 6.21735 6.30777 6.42362 6.46471 6.61342 6.67068 6.78303 6.89678 6.94395 7.45552 7.80390 8.09812 8.38787 8.52284 9.31804 10.04359 10.24561 11.51930 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.003934 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.135295 B = 7116.055629 C = 8713.332327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.270 6.270 3 C 0.138 3.862 4 C -0.175 4.175 5 C -0.110 4.110 6 C 0.052 3.948 7 N -0.415 5.415 8 C 0.055 3.945 9 C 0.587 3.413 10 O -0.512 6.512 11 N -0.602 5.602 12 C 0.094 3.906 13 C -0.099 4.099 14 H 0.081 0.919 15 C -0.140 4.140 16 C -0.081 4.081 17 C -0.135 4.135 18 C 0.174 3.826 19 N -0.753 5.753 20 C -0.239 4.239 21 H 0.089 0.911 22 C 0.004 3.996 23 N -0.936 5.936 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.112 3.888 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.165 0.835 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.028 0.972 45 H 0.361 0.639 46 H 0.258 0.742 47 H 0.066 0.934 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 22.973 14.236 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.180 6.180 3 C 0.087 3.913 4 C -0.202 4.202 5 C -0.130 4.130 6 C -0.108 4.108 7 N -0.127 5.127 8 C -0.084 4.084 9 C 0.374 3.626 10 O -0.386 6.386 11 N -0.335 5.335 12 C -0.029 4.029 13 C -0.119 4.119 14 H 0.099 0.901 15 C -0.197 4.197 16 C -0.082 4.082 17 C -0.192 4.192 18 C 0.047 3.953 19 N -0.399 5.399 20 C -0.369 4.369 21 H 0.106 0.894 22 C -0.191 4.191 23 N -0.585 5.585 24 Si 0.711 3.289 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.010 4.010 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.194 0.806 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.786 22.068 14.063 27.302 hybrid contribution -0.910 -0.551 0.937 1.417 sum -8.696 21.517 15.000 27.634 Atomic orbital electron populations 1.23240 0.78412 1.04927 1.01062 1.86468 1.21013 1.24371 1.86110 1.20046 0.92276 0.85907 0.93077 1.21758 1.01118 0.91788 1.05511 1.22177 0.95787 0.98336 0.96669 1.22783 0.91473 0.96582 0.99943 1.67750 1.38694 0.97464 1.08743 1.20697 0.88538 0.92752 1.06416 1.17137 0.80398 0.87208 0.77902 1.90877 1.70588 1.27870 1.49258 1.48587 1.04199 1.09564 1.71108 1.23015 0.91777 0.89674 0.98462 1.22164 0.95367 0.94720 0.99606 0.90082 1.21875 0.96411 0.99809 1.01652 1.21847 0.95217 0.94410 0.96746 1.21888 0.95085 1.01856 1.00389 1.20618 0.97974 0.84918 0.91774 1.42750 1.84594 1.01223 1.11351 1.19049 1.38459 0.89637 0.89729 0.89365 1.24637 1.01810 0.96089 0.96580 1.69705 1.55971 1.06906 1.25911 0.86600 0.78498 0.79734 0.84072 1.20939 1.21774 1.20284 1.22628 0.89089 0.91201 0.98057 0.92570 0.92414 0.87456 0.83632 0.84031 0.81770 0.86418 0.91822 0.92279 0.91993 0.92980 0.92842 0.92159 0.91816 0.95688 0.95368 0.80580 0.93186 0.91542 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 101.05 0.99 1.15 16 2 O -0.27 -3.87 8.58 -40.54 -0.35 -4.21 16 3 C 0.14 1.80 6.71 -38.56 -0.26 1.54 16 4 C -0.18 -1.53 9.13 -39.15 -0.36 -1.88 16 5 C -0.11 -0.77 10.10 -39.36 -0.40 -1.16 16 6 C 0.05 0.44 11.17 -17.55 -0.20 0.24 16 7 N -0.41 -4.96 6.61 -9.71 -0.06 -5.02 16 8 C 0.05 0.81 6.74 -82.88 -0.56 0.25 16 9 C 0.59 10.73 7.88 -12.33 -0.10 10.63 16 10 O -0.51 -11.22 15.45 -16.56 -0.26 -11.48 16 11 N -0.60 -9.97 3.31 -170.17 -0.56 -10.53 16 12 C 0.09 1.20 6.13 -2.41 -0.01 1.19 16 13 C -0.10 -1.28 3.30 -89.22 -0.29 -1.57 16 14 H 0.08 1.09 7.72 -51.93 -0.40 0.69 16 15 C -0.14 -1.43 7.93 37.16 0.29 -1.13 16 16 C -0.08 -1.31 0.74 -152.89 -0.11 -1.42 16 17 C -0.13 -1.99 7.11 37.16 0.26 -1.72 16 18 C 0.17 3.61 4.96 -4.04 -0.02 3.59 16 19 N -0.75 -18.83 4.60 -59.91 -0.28 -19.11 16 20 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 21 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 23 N -0.94 -30.60 13.97 55.49 0.78 -29.83 16 24 Si 0.88 23.22 27.74 -169.99 -4.71 18.50 16 25 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 27 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 28 C 0.11 1.96 5.92 -2.19 -0.01 1.94 16 29 H 0.06 0.35 7.70 -51.93 -0.40 -0.05 16 30 H 0.06 0.39 7.70 -51.93 -0.40 -0.01 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.15 0.84 6.46 -52.49 -0.34 0.50 16 33 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 34 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.12 1.44 5.06 -51.93 -0.26 1.18 16 36 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 37 H 0.06 0.57 6.62 -51.93 -0.34 0.23 16 38 H 0.06 0.64 6.98 -51.93 -0.36 0.28 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.65 6.68 -51.93 -0.35 0.31 16 41 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16 42 H 0.06 0.89 6.89 -51.93 -0.36 0.53 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.36 8.80 3.85 -40.82 -0.16 8.65 16 46 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 47 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 48 H 0.09 1.97 7.00 -51.93 -0.36 1.60 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -37.81 374.76 -7.85 -45.66 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.03 Total: 5.97 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.02 Total: 4.41 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.13 Total: -64.49 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.60 Total: -15.69 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.71 Total: 18.50 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.81 -7.85 -45.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183262757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.723 kcal (2) G-P(sol) polarization free energy of solvation -37.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds