Wall clock time and date at job start Tue Mar 31 2020 17:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35653 * 116.99943 * 2 1 4 4 C 1.39337 * 120.53729 * 0.02562 * 3 2 1 5 5 C 1.38311 * 118.43915 * 179.97438 * 4 3 2 6 6 C 1.38759 * 119.44082 * 0.02562 * 5 4 3 7 7 N 1.31378 * 121.07107 * 0.02562 * 6 5 4 8 8 C 1.32859 * 121.69411 * 359.66640 * 7 6 5 9 9 C 1.47835 * 119.78299 * 180.31238 * 8 7 6 10 10 O 1.21550 * 119.99759 * 174.75245 * 9 8 7 11 11 N 1.34778 * 119.99946 * 354.74658 * 9 8 7 12 12 C 1.48142 * 127.83962 * 4.36601 * 11 9 8 13 13 C 1.54382 * 104.61979 * 219.58467 * 12 11 9 14 14 H 1.08997 * 110.34417 * 95.11005 * 13 12 11 15 15 C 1.53002 * 110.34308 * 217.26295 * 13 12 11 16 16 C 1.54287 * 104.95895 * 336.13110 * 13 12 11 17 17 C 1.52999 * 110.34420 * 241.02313 * 16 13 12 18 18 C 1.52999 * 110.33954 * 118.87080 * 16 13 12 19 19 N 1.46506 * 109.46971 * 179.97438 * 18 16 13 20 20 C 1.36937 * 119.99900 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00365 * 359.97438 * 20 19 18 22 22 C 1.38820 * 119.99648 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99572 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00097 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.46897 * 89.99931 * 24 22 20 26 26 H 1.48500 * 109.46840 * 210.00110 * 24 22 20 27 27 H 1.48497 * 109.46982 * 329.99823 * 24 22 20 28 28 C 1.48143 * 127.83440 * 184.04276 * 11 9 8 29 29 H 1.09004 * 109.46926 * 299.99545 * 1 2 3 30 30 H 1.09003 * 109.47555 * 59.99602 * 1 2 3 31 31 H 1.09001 * 109.46754 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.78464 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.27463 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.46671 * 180.02562 * 6 5 4 35 35 H 1.09002 * 110.40974 * 338.36959 * 12 11 9 36 36 H 1.09003 * 110.41088 * 100.79575 * 12 11 9 37 37 H 1.09003 * 109.47062 * 58.54268 * 15 13 12 38 38 H 1.09000 * 109.47162 * 178.54072 * 15 13 12 39 39 H 1.08997 * 109.47249 * 298.54314 * 15 13 12 40 40 H 1.09001 * 109.46902 * 60.00056 * 17 16 13 41 41 H 1.09004 * 109.47091 * 179.97438 * 17 16 13 42 42 H 1.08997 * 109.47432 * 300.00285 * 17 16 13 43 43 H 1.08998 * 109.47354 * 299.99951 * 18 16 13 44 44 H 1.08999 * 109.47346 * 60.00605 * 18 16 13 45 45 H 0.96998 * 119.99905 * 0.02562 * 19 18 16 46 46 H 0.97000 * 119.99356 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.40615 * 259.19669 * 28 11 9 48 48 H 1.08998 * 110.40788 * 21.63442 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3843 0.0005 5 6 1.9695 3.5929 0.0011 6 6 3.3571 3.6012 0.0005 7 7 4.0418 2.4800 -0.0010 8 6 3.4409 1.2951 0.0045 9 6 4.2532 0.0598 0.0095 10 8 3.7112 -1.0234 0.1108 11 7 5.5945 0.1349 -0.0984 12 6 6.4360 1.3533 -0.1410 13 6 7.5228 1.0398 -1.1917 14 1 7.2312 1.4305 -2.1666 15 6 8.8656 1.6338 -0.7616 16 6 7.6058 -0.5003 -1.2315 17 6 9.0065 -0.9681 -0.8314 18 6 7.2525 -1.0161 -2.6279 19 7 7.3378 -2.4785 -2.6444 20 6 7.0623 -3.1675 -3.7953 21 1 6.7817 -2.6329 -4.6907 22 6 7.1426 -4.5533 -3.8107 23 7 6.8783 -5.2155 -4.9171 24 14 7.6258 -5.4782 -2.2614 25 1 6.4064 -5.8055 -1.4797 26 1 8.3275 -6.7332 -2.6326 27 1 8.5277 -4.6311 -1.4402 28 6 6.5623 -0.9826 -0.1948 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2174 2.3527 0.0005 33 1 1.4193 4.5222 0.0011 34 1 3.8827 4.5446 0.0013 35 1 5.8436 2.2138 -0.4521 36 1 6.8903 1.5358 0.8329 37 1 9.1500 1.2248 0.2079 38 1 9.6273 1.3823 -1.4997 39 1 8.7762 2.7175 -0.6866 40 1 9.2288 -0.6261 0.1794 41 1 9.0491 -2.0568 -0.8639 42 1 9.7394 -0.5546 -1.5242 43 1 6.2386 -0.7080 -2.8833 44 1 7.9517 -0.6036 -3.3553 45 1 7.5887 -2.9588 -1.8399 46 1 6.9348 -6.1838 -4.9279 47 1 7.0361 -1.1594 0.7708 48 1 6.0653 -1.8866 -0.5466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183262757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:58 Heat of formation + Delta-G solvation = -23.497780 kcal Electronic energy + Delta-G solvation = -29873.864334 eV Core-core repulsion = 25929.536233 eV Total energy + Delta-G solvation = -3944.328101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07901 -41.03284 -39.29207 -39.15882 -36.63748 -34.72843 -33.45190 -33.29123 -31.89166 -31.39276 -28.59602 -28.24792 -27.70005 -26.63366 -25.36530 -24.58240 -23.82762 -22.39391 -21.17124 -20.18856 -19.43122 -19.02431 -18.49948 -17.81964 -17.25370 -16.94925 -16.63395 -16.57225 -16.19330 -15.96881 -15.42413 -15.34547 -15.27543 -15.05533 -14.65841 -14.58609 -14.43831 -14.27298 -13.86745 -13.62025 -13.49401 -13.07532 -13.02204 -12.93051 -12.68365 -12.62312 -12.47364 -12.44451 -12.26177 -12.12736 -11.90394 -11.63815 -11.46988 -11.18238 -11.17101 -11.03755 -10.83510 -10.32887 -9.80122 -9.43950 -9.33818 -8.07925 -5.40338 -0.38161 0.21040 1.29721 1.36457 1.41285 1.71633 1.89063 2.18497 2.43143 2.79721 3.09997 3.23440 3.45718 3.53650 3.60947 3.70198 3.76304 3.94014 4.00331 4.13239 4.23695 4.26008 4.30065 4.32581 4.39447 4.41886 4.62973 4.64826 4.69845 4.71705 4.82740 4.86608 4.92648 4.96058 4.99391 5.01095 5.12675 5.13910 5.25067 5.33661 5.38657 5.45537 5.56076 5.68070 5.70499 6.16423 6.20001 6.53243 6.71613 7.02701 7.12778 7.78705 7.98878 9.14127 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.003934 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.135295 B = 7116.055629 C = 8713.332327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.317 6.317 3 C 0.117 3.883 4 C -0.170 4.170 5 C -0.085 4.085 6 C 0.055 3.945 7 N -0.428 5.428 8 C 0.009 3.991 9 C 0.572 3.428 10 O -0.572 6.572 11 N -0.607 5.607 12 C 0.097 3.903 13 C -0.091 4.091 14 H 0.072 0.928 15 C -0.134 4.134 16 C -0.073 4.073 17 C -0.130 4.130 18 C 0.175 3.825 19 N -0.752 5.752 20 C -0.236 4.236 21 H 0.052 0.948 22 C -0.060 4.060 23 N -0.983 5.983 24 Si 0.948 3.052 25 H -0.288 1.288 26 H -0.286 1.286 27 H -0.245 1.245 28 C 0.109 3.891 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.178 0.822 33 H 0.192 0.808 34 H 0.206 0.794 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.074 0.926 43 H -0.003 1.003 44 H 0.032 0.968 45 H 0.366 0.634 46 H 0.259 0.741 47 H 0.089 0.911 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 27.248 16.775 32.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.228 6.228 3 C 0.066 3.934 4 C -0.196 4.196 5 C -0.105 4.105 6 C -0.107 4.107 7 N -0.140 5.140 8 C -0.126 4.126 9 C 0.361 3.639 10 O -0.451 6.451 11 N -0.338 5.338 12 C -0.024 4.024 13 C -0.111 4.111 14 H 0.091 0.909 15 C -0.191 4.191 16 C -0.074 4.074 17 C -0.188 4.188 18 C 0.048 3.952 19 N -0.399 5.399 20 C -0.367 4.367 21 H 0.070 0.930 22 C -0.252 4.252 23 N -0.634 5.634 24 Si 0.775 3.225 25 H -0.215 1.215 26 H -0.212 1.212 27 H -0.169 1.169 28 C -0.014 4.014 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.195 0.805 33 H 0.209 0.791 34 H 0.223 0.777 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.015 0.985 44 H 0.050 0.950 45 H 0.200 0.800 46 H 0.068 0.932 47 H 0.107 0.893 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.236 26.398 16.620 32.023 hybrid contribution -1.228 -1.672 0.059 2.075 sum -8.464 24.726 16.679 31.003 Atomic orbital electron populations 1.23501 0.76141 1.05628 1.03101 1.86402 1.23691 1.26116 1.86579 1.20349 0.92173 0.86952 0.93919 1.22179 1.02567 0.90727 1.04167 1.22770 0.95492 0.99407 0.92816 1.23607 0.92670 0.96635 0.97770 1.67606 1.39456 0.97429 1.09491 1.20242 0.89007 0.92345 1.11039 1.17920 0.80973 0.88126 0.76834 1.90808 1.71776 1.30325 1.52190 1.48774 1.04130 1.10528 1.70361 1.23227 0.91187 0.88474 0.99515 1.22157 0.97465 0.91871 0.99562 0.90924 1.21850 0.93991 1.01186 1.02070 1.21763 0.95788 0.96847 0.92991 1.21892 0.93865 1.00234 1.02775 1.20726 0.96405 0.82592 0.95430 1.42727 1.84243 1.02957 1.09939 1.19033 1.37445 0.90053 0.90129 0.92973 1.25459 1.02487 0.97032 1.00194 1.69879 1.57750 1.07204 1.28516 0.85512 0.78435 0.78580 0.79983 1.21472 1.21195 1.16945 1.22589 0.89421 0.90125 0.99242 0.90035 0.90636 0.87677 0.80519 0.79119 0.77722 0.85466 0.89588 0.91079 0.91959 0.90596 0.89357 0.94658 0.90716 0.98536 0.95021 0.79993 0.93245 0.89341 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.83 113.37 1.11 1.29 16 2 O -0.32 -9.65 8.58 -68.76 -0.59 -10.24 16 3 C 0.12 3.08 6.71 22.93 0.15 3.24 16 4 C -0.17 -2.47 9.13 22.55 0.21 -2.27 16 5 C -0.09 -0.77 10.10 22.41 0.23 -0.55 16 6 C 0.06 0.69 11.17 84.89 0.95 1.64 16 7 N -0.43 -9.53 6.61 -184.63 -1.22 -10.75 16 8 C 0.01 0.28 6.74 41.93 0.28 0.56 16 9 C 0.57 22.38 7.88 86.78 0.68 23.06 16 10 O -0.57 -27.58 15.45 17.05 0.26 -27.32 16 11 N -0.61 -20.71 3.31 -810.59 -2.68 -23.39 16 12 C 0.10 2.35 6.13 86.53 0.53 2.88 16 13 C -0.09 -2.18 3.30 -9.89 -0.03 -2.22 16 14 H 0.07 1.88 7.72 -2.39 -0.02 1.86 16 15 C -0.13 -2.19 7.93 71.98 0.57 -1.62 16 16 C -0.07 -2.32 0.74 -51.13 -0.04 -2.35 16 17 C -0.13 -3.57 7.11 71.98 0.51 -3.06 16 18 C 0.17 7.53 4.96 86.38 0.43 7.96 16 19 N -0.75 -39.04 4.60 -343.44 -1.58 -40.62 16 20 C -0.24 -14.72 10.47 84.04 0.88 -13.84 16 21 H 0.05 3.56 8.06 -2.91 -0.02 3.53 16 22 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 23 N -0.98 -66.82 13.97 21.65 0.30 -66.51 16 24 Si 0.95 49.20 27.74 68.60 1.90 51.11 16 25 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 26 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.25 -11.35 6.52 99.48 0.65 -10.70 16 28 C 0.11 3.90 5.92 86.68 0.51 4.41 16 29 H 0.08 0.91 7.70 -2.38 -0.02 0.89 16 30 H 0.08 0.95 7.70 -2.39 -0.02 0.94 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.18 1.33 6.46 -2.91 -0.02 1.31 16 33 H 0.19 -0.09 8.06 -2.91 -0.02 -0.11 16 34 H 0.21 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.13 2.88 5.06 -2.39 -0.01 2.87 16 36 H 0.09 1.71 7.86 -2.39 -0.02 1.69 16 37 H 0.07 1.03 6.62 -2.39 -0.02 1.01 16 38 H 0.06 1.05 6.98 -2.39 -0.02 1.04 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.82 6.68 -2.39 -0.02 1.80 16 41 H 0.03 1.14 6.74 -2.38 -0.02 1.12 16 42 H 0.07 1.89 6.89 -2.39 -0.02 1.87 16 43 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.37 18.17 3.85 -92.71 -0.36 17.81 16 46 H 0.26 16.66 8.31 -92.71 -0.77 15.89 16 47 H 0.09 2.71 7.84 -2.39 -0.02 2.69 16 48 H 0.04 2.02 7.00 -2.39 -0.02 2.01 16 Total: -1.00 -92.55 374.76 4.41 -88.15 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.56 Total: 23.81 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 7.45 Total: 15.78 kcal Atomic # 7 Polarization: -136.09 SS G_CDS: -5.18 Total: -141.27 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.33 Total: -37.56 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.90 Total: 51.11 kcal Total: -92.55 4.41 -88.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183262757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.651 kcal (2) G-P(sol) polarization free energy of solvation -92.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds